Wall clock time and date at job start Mon Mar 30 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30049 * 124.91275 * 2 1 4 4 C 1.35952 * 109.55333 * 180.02562 * 3 2 1 5 5 C 1.39118 * 133.42832 * 179.97438 * 4 3 2 6 6 C 1.40320 * 119.43624 * 180.02562 * 5 4 3 7 7 C 1.41275 * 120.02294 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00130 * 209.15008 * 7 6 5 9 9 C 1.39882 * 119.99878 * 29.14933 * 7 6 5 10 10 N 1.30885 * 120.00274 * 197.55971 * 9 7 6 11 11 Si 1.86802 * 119.99797 * 17.55106 * 9 7 6 12 12 H 1.48501 * 109.47473 * 269.99986 * 11 9 7 13 13 H 1.48497 * 109.47235 * 30.00356 * 11 9 7 14 14 H 1.48503 * 109.46964 * 150.00492 * 11 9 7 15 15 C 1.41258 * 119.95832 * 0.25491 * 6 5 4 16 16 Cl 1.73606 * 119.83321 * 179.72374 * 15 6 5 17 17 C 1.36240 * 120.32939 * 359.46403 * 15 6 5 18 18 C 1.39349 * 120.27726 * 0.55327 * 17 15 6 19 19 N 1.36148 * 124.91479 * 180.02562 * 2 1 3 20 20 C 1.46505 * 126.28612 * 359.97438 * 19 2 1 21 21 H 1.08994 * 109.46684 * 269.94520 * 1 2 3 22 22 H 1.08992 * 109.46873 * 29.94327 * 1 2 3 23 23 H 1.08996 * 109.46691 * 149.94590 * 1 2 3 24 24 H 1.07997 * 120.28192 * 0.03051 * 5 4 3 25 25 H 0.97003 * 119.99784 * 355.42388 * 10 9 7 26 26 H 1.08003 * 119.86335 * 180.23315 * 17 15 6 27 27 H 1.09001 * 109.47058 * 269.97348 * 20 19 2 28 28 H 1.09000 * 109.47401 * 29.96998 * 20 19 2 29 29 H 1.08998 * 109.47123 * 149.97675 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2514 1.0664 0.0000 4 6 3.5623 0.7063 -0.0006 5 6 4.7521 1.4273 -0.0013 6 6 5.9752 0.7395 -0.0023 7 6 7.1909 1.4591 -0.0036 8 1 8.0713 1.0313 -0.4599 9 6 7.2543 2.7260 0.5862 10 7 8.2443 3.5326 0.2994 11 14 5.9258 3.2665 1.7831 12 1 4.8329 3.9415 1.0378 13 1 5.3829 2.0786 2.4896 14 1 6.5055 4.2094 2.7732 15 6 5.9902 -0.6730 -0.0080 16 17 7.5052 -1.5207 -0.0166 17 6 4.8216 -1.3735 -0.0016 18 6 3.6003 -0.7025 -0.0009 19 7 2.2863 -1.1164 -0.0005 20 6 1.8142 -2.5033 -0.0006 21 1 -0.3632 -0.0010 1.0276 22 1 -0.3633 0.8904 -0.5129 23 1 -0.3632 -0.8895 -0.5147 24 1 4.7346 2.5071 -0.0010 25 1 8.9685 3.2283 -0.2697 26 1 4.8419 -2.4533 -0.0023 27 1 1.6979 -2.8476 1.0271 28 1 0.8542 -2.5603 -0.5136 29 1 2.5392 -3.1339 -0.5152 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259872264.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:36 Heat of formation + Delta-G solvation = 30.682962 kcal Electronic energy + Delta-G solvation = -15758.492913 eV Core-core repulsion = 13092.730481 eV Total energy + Delta-G solvation = -2665.762431 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.81010 -38.75712 -36.91643 -35.41425 -34.98390 -32.38497 -31.37872 -28.90983 -27.88964 -25.89057 -23.28564 -22.34418 -20.80587 -20.21078 -18.13291 -17.67033 -16.79513 -16.55123 -15.99688 -15.25866 -14.85801 -14.76966 -14.32618 -14.10133 -13.94188 -13.62298 -13.22730 -13.09043 -12.99758 -12.85906 -12.59473 -12.07301 -11.68643 -11.51004 -11.33802 -11.10769 -10.90317 -10.62219 -9.46902 -9.06496 -8.86051 -6.52617 0.12028 0.70641 1.38039 1.39087 1.46826 1.71601 1.93799 2.02187 2.15607 2.58970 3.30773 3.47161 3.77513 4.01708 4.15971 4.43186 4.53514 4.62100 4.67030 4.73453 4.79479 4.84017 4.94908 5.13742 5.46022 5.54878 5.59667 5.65077 5.84407 6.23648 6.45636 6.50887 6.73009 7.14310 8.01705 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.009587 C = 0.006940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.193810 B = 2920.052503 C = 4033.340177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.278 3.722 3 N -0.562 5.562 4 C 0.076 3.924 5 C -0.242 4.242 6 C 0.080 3.920 7 C -0.524 4.524 8 H 0.071 0.929 9 C 0.020 3.980 10 N -0.839 5.839 11 Si 1.101 2.899 12 H -0.274 1.274 13 H -0.272 1.272 14 H -0.276 1.276 15 C -0.090 4.090 16 Cl -0.080 7.080 17 C -0.061 4.061 18 C -0.044 4.044 19 N -0.490 5.490 20 C 0.074 3.926 21 H 0.103 0.897 22 H 0.094 0.906 23 H 0.111 0.889 24 H 0.103 0.897 25 H 0.282 0.718 26 H 0.144 0.856 27 H 0.084 0.916 28 H 0.117 0.883 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.175 -12.179 0.665 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.013 3.987 3 N -0.286 5.286 4 C -0.041 4.041 5 C -0.265 4.265 6 C 0.075 3.925 7 C -0.554 4.554 8 H 0.089 0.911 9 C -0.195 4.195 10 N -0.463 5.463 11 Si 0.926 3.074 12 H -0.201 1.201 13 H -0.198 1.198 14 H -0.203 1.203 15 C -0.118 4.118 16 Cl -0.051 7.051 17 C -0.083 4.083 18 C -0.150 4.150 19 N -0.182 5.182 20 C -0.066 4.066 21 H 0.121 0.879 22 H 0.112 0.888 23 H 0.129 0.871 24 H 0.120 0.880 25 H 0.092 0.908 26 H 0.162 0.838 27 H 0.103 0.897 28 H 0.136 0.864 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.727 -10.303 1.534 18.038 hybrid contribution 1.825 -1.798 -1.222 2.839 sum -12.901 -12.101 0.312 17.691 Atomic orbital electron populations 1.20559 0.80597 1.05919 1.05453 1.24574 0.97388 0.80315 0.96417 1.70379 1.01245 1.29731 1.27269 1.19031 0.91566 0.91633 1.01844 1.19983 0.89402 0.97959 1.19154 1.17426 0.93031 0.90506 0.91518 1.20518 0.96790 1.03024 1.35061 0.91131 1.27894 1.01823 0.92010 0.97743 1.70602 1.09704 1.35631 1.30395 0.83155 0.72460 0.76871 0.74940 1.20126 1.19758 1.20290 1.20487 0.85916 0.91771 1.13623 1.98238 1.32887 1.76639 1.97338 1.19236 0.87415 0.99323 1.02288 1.18369 0.86153 0.94045 1.16475 1.45021 1.03011 1.08687 1.61528 1.22259 1.02673 0.77187 1.04529 0.87859 0.88772 0.87055 0.87960 0.90759 0.83838 0.89718 0.86432 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.17 71.24 0.72 -0.43 15 2 C 0.28 8.83 7.85 137.90 1.08 9.91 15 3 N -0.56 -24.51 11.28 -179.94 -2.03 -26.54 15 4 C 0.08 3.71 7.21 39.38 0.28 3.99 15 5 C -0.24 -12.89 7.31 22.99 0.17 -12.73 15 6 C 0.08 4.26 5.14 -21.28 -0.11 4.15 15 7 C -0.52 -29.45 8.82 23.41 0.21 -29.25 15 8 H 0.07 4.09 7.35 -2.91 -0.02 4.07 15 9 C 0.02 1.14 5.41 85.23 0.46 1.60 15 10 N -0.84 -47.58 13.66 21.82 0.30 -47.28 15 11 Si 1.10 54.05 24.90 68.60 1.71 55.76 15 12 H -0.27 -13.37 6.44 99.48 0.64 -12.73 15 13 H -0.27 -13.50 7.03 99.48 0.70 -12.80 15 14 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 15 C -0.09 -4.16 6.33 22.55 0.14 -4.02 15 16 Cl -0.08 -3.30 27.58 -2.72 -0.08 -3.38 15 17 C -0.06 -2.46 9.71 22.07 0.21 -2.24 15 18 C -0.04 -1.81 6.88 39.14 0.27 -1.54 15 19 N -0.49 -15.03 3.20 -528.13 -1.69 -16.72 15 20 C 0.07 1.23 10.94 127.77 1.40 2.63 15 21 H 0.10 1.41 8.14 -2.39 -0.02 1.39 15 22 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 23 H 0.11 1.06 7.00 -2.39 -0.02 1.04 15 24 H 0.10 5.66 4.41 -2.91 -0.01 5.65 15 25 H 0.28 15.64 8.73 -92.71 -0.81 14.83 15 26 H 0.14 4.58 8.06 -2.91 -0.02 4.56 15 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 15 28 H 0.12 1.09 6.99 -2.39 -0.02 1.07 15 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 15 Total: -1.00 -71.02 262.08 4.12 -66.90 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: 1.07 Total: -0.82 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 4.84 Total: -27.91 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -3.42 Total: -90.54 kcal Atomic # 14 Polarization: 54.05 SS G_CDS: 1.71 Total: 55.76 kcal Atomic # 17 Polarization: -3.30 SS G_CDS: -0.08 Total: -3.38 kcal Total: -71.02 4.12 -66.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259872264.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.582 kcal (2) G-P(sol) polarization free energy of solvation -71.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds