Wall clock time and date at job start Mon Mar 30 2020 06:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48510 * 109.46866 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.47245 * 29.99762 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99899 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 7 12 12 C 1.35111 * 125.69408 * 124.99514 * 11 10 9 13 13 N 1.36827 * 107.18552 * 180.02562 * 12 11 10 14 14 C 1.36539 * 132.55734 * 180.02562 * 13 12 11 15 15 C 1.35047 * 120.59214 * 179.97438 * 14 13 12 16 16 Cl 1.73604 * 119.86458 * 179.97438 * 15 14 13 17 17 C 1.40546 * 120.27128 * 0.03862 * 15 14 13 18 18 C 1.36012 * 119.69110 * 359.97438 * 17 15 14 19 19 C 1.37055 * 107.00326 * 359.97438 * 13 12 11 20 20 N 1.32579 * 108.03625 * 359.73551 * 19 13 12 21 21 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 23 23 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 24 24 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 25 25 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 26 26 H 1.08002 * 126.41083 * 0.02713 * 12 11 10 27 27 H 1.08000 * 119.70079 * 359.97140 * 14 13 12 28 28 H 1.08006 * 120.15210 * 179.97438 * 17 15 14 29 29 H 1.08000 * 120.32071 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 -0.0001 12 6 1.6430 -5.9643 -0.8992 13 7 0.7779 -6.9633 -0.5443 14 6 0.5089 -8.1875 -1.0858 15 6 -0.4136 -8.9991 -0.5254 16 17 -0.7412 -10.5516 -1.2301 17 6 -1.1104 -8.5916 0.6251 18 6 -0.8515 -7.3743 1.1737 19 6 0.1153 -6.5396 0.5781 20 7 0.5679 -5.3335 0.8913 21 1 -0.4849 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8719 -3.6044 -0.8895 25 1 2.8719 -3.6043 0.8905 26 1 2.3199 -5.9715 -1.7407 27 1 1.0385 -8.5095 -1.9702 28 1 -1.8481 -9.2422 1.0714 29 1 -1.3807 -7.0511 2.0580 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259874560.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:11 Heat of formation + Delta-G solvation = 70.973845 kcal Electronic energy + Delta-G solvation = -14913.138908 eV Core-core repulsion = 12249.123620 eV Total energy + Delta-G solvation = -2664.015288 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.67505 -37.96283 -36.48544 -33.94218 -33.42110 -31.58951 -29.34029 -28.50395 -25.42807 -23.43603 -22.67250 -21.58254 -19.72298 -17.86455 -17.02093 -16.27948 -15.93469 -15.82025 -14.77329 -14.40938 -14.21401 -13.34155 -13.13459 -12.86009 -12.59060 -12.24859 -12.04856 -11.33037 -11.31447 -11.00462 -10.90329 -10.81654 -10.53733 -10.04728 -9.76922 -9.36585 -9.04691 -8.35954 -8.26251 -7.79757 -5.93013 -3.95953 0.58554 1.17048 1.55728 2.80630 2.97697 3.35973 3.42077 3.45482 3.59019 4.19969 4.38970 4.50062 4.54748 4.87975 5.12134 5.42444 5.49576 5.56037 5.70897 5.83903 5.90909 6.32130 6.47550 6.60030 6.80978 7.10135 7.15395 7.76680 7.92176 8.10111 8.18106 8.46698 9.11599 9.67259 11.18174 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.063119 B = 0.003827 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.500296 B = 7313.871422 C = 7484.751795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.031 3.969 10 C -0.041 4.041 11 C 0.097 3.903 12 C -0.105 4.105 13 N -0.362 5.362 14 C 0.075 3.925 15 C -0.069 4.069 16 Cl -0.048 7.048 17 C -0.111 4.111 18 C -0.053 4.053 19 C 0.208 3.792 20 N -0.466 5.466 21 H 0.260 0.740 22 H 0.013 0.987 23 H 0.028 0.972 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.184 0.816 27 H 0.167 0.833 28 H 0.148 0.852 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 -20.728 -2.060 20.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.006 4.006 10 C -0.079 4.079 11 C -0.035 4.035 12 C -0.234 4.234 13 N -0.035 5.035 14 C -0.050 4.050 15 C -0.099 4.099 16 Cl -0.020 7.020 17 C -0.135 4.135 18 C -0.073 4.073 19 C -0.035 4.035 20 N -0.186 5.186 21 H 0.069 0.931 22 H 0.031 0.969 23 H 0.046 0.954 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.201 0.799 27 H 0.184 0.816 28 H 0.166 0.834 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.963 -20.225 -1.497 20.303 hybrid contribution 0.615 0.249 -0.933 1.144 sum -0.348 -19.976 -2.430 20.127 Atomic orbital electron populations 1.69988 1.06057 1.26481 1.50712 1.25026 0.94829 0.99210 0.95418 0.86595 0.79846 0.83548 0.77990 1.20757 1.21274 1.19856 1.21250 0.93008 0.91011 1.50719 0.92566 1.19015 0.93648 0.90001 0.97956 1.20341 0.97737 0.88376 1.01483 1.21638 0.94837 0.96575 0.90437 1.22600 1.03631 0.89713 1.07407 1.42753 1.27674 1.11768 1.21345 1.21188 0.99330 0.84567 0.99898 1.19932 1.01558 0.89854 0.98580 1.98377 1.94673 1.25449 1.83464 1.20791 1.00960 0.96764 0.94984 1.20237 0.95243 0.91527 1.00321 1.21172 0.99460 0.93916 0.88949 1.70798 1.12980 1.07699 1.27150 0.93063 0.96851 0.95389 0.91441 0.91103 0.79912 0.81571 0.83418 0.82357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.57 13.29 55.43 0.74 -26.83 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 15 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 15 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 15 9 C 0.03 0.84 4.94 -27.88 -0.14 0.70 15 10 C -0.04 -0.87 5.71 -27.88 -0.16 -1.03 15 11 C 0.10 1.92 6.33 -82.98 -0.53 1.39 15 12 C -0.10 -1.67 11.63 -16.43 -0.19 -1.86 15 13 N -0.36 -5.42 2.95 -62.62 -0.18 -5.60 15 14 C 0.07 0.85 10.70 -16.59 -0.18 0.67 15 15 C -0.07 -0.72 6.28 -39.85 -0.25 -0.97 15 16 Cl -0.05 -0.42 28.94 -51.86 -1.50 -1.92 15 17 C -0.11 -1.14 9.86 -39.51 -0.39 -1.53 15 18 C -0.05 -0.67 10.10 -39.36 -0.40 -1.07 15 19 C 0.21 3.50 7.81 -156.05 -1.22 2.28 15 20 N -0.47 -9.62 11.29 -9.01 -0.10 -9.72 15 21 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 22 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 15 23 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.07 1.29 8.10 -51.93 -0.42 0.87 15 25 H 0.07 1.49 8.14 -51.93 -0.42 1.06 15 26 H 0.18 2.25 8.06 -52.49 -0.42 1.83 15 27 H 0.17 1.39 8.06 -52.49 -0.42 0.97 15 28 H 0.15 1.08 8.06 -52.48 -0.42 0.66 15 29 H 0.16 1.70 8.06 -52.49 -0.42 1.28 15 LS Contribution 276.07 15.07 4.16 4.16 Total: -1.00 -33.23 276.07 -8.69 -41.92 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: -2.92 Total: -3.75 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -3.86 Total: -15.14 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.45 Total: -42.15 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -1.50 Total: -1.92 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.23 -8.69 -41.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259874560.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.896 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds