Wall clock time and date at job start Mon Mar 30 2020 06:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48510 * 109.46866 * 269.99977 * 3 2 1 5 5 H 1.48502 * 109.47245 * 29.99762 * 3 2 1 6 6 H 1.48494 * 109.47271 * 149.99899 * 3 2 1 7 7 C 1.37875 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 7 12 12 C 1.35111 * 125.69408 * 124.99514 * 11 10 9 13 13 N 1.36827 * 107.18552 * 180.02562 * 12 11 10 14 14 C 1.36539 * 132.55734 * 180.02562 * 13 12 11 15 15 C 1.35047 * 120.59214 * 179.97438 * 14 13 12 16 16 Cl 1.73604 * 119.86458 * 179.97438 * 15 14 13 17 17 C 1.40546 * 120.27128 * 0.03862 * 15 14 13 18 18 C 1.36012 * 119.69110 * 359.97438 * 17 15 14 19 19 C 1.37055 * 107.00326 * 359.97438 * 13 12 11 20 20 N 1.32579 * 108.03625 * 359.73551 * 19 13 12 21 21 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.47612 * 59.99944 * 9 7 2 23 23 H 1.09001 * 109.47122 * 299.99775 * 9 7 2 24 24 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 25 25 H 1.08993 * 109.46955 * 59.99842 * 10 9 7 26 26 H 1.08002 * 126.41083 * 0.02713 * 12 11 10 27 27 H 1.08000 * 119.70079 * 359.97140 * 14 13 12 28 28 H 1.08006 * 120.15210 * 179.97438 * 17 15 14 29 29 H 1.08000 * 120.32071 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4918 -4.9672 -0.0001 12 6 1.6430 -5.9643 -0.8992 13 7 0.7779 -6.9633 -0.5443 14 6 0.5089 -8.1875 -1.0858 15 6 -0.4136 -8.9991 -0.5254 16 17 -0.7412 -10.5516 -1.2301 17 6 -1.1104 -8.5916 0.6251 18 6 -0.8515 -7.3743 1.1737 19 6 0.1153 -6.5396 0.5781 20 7 0.5679 -5.3335 0.8913 21 1 -0.4849 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.8719 -3.6044 -0.8895 25 1 2.8719 -3.6043 0.8905 26 1 2.3199 -5.9715 -1.7407 27 1 1.0385 -8.5095 -1.9702 28 1 -1.8481 -9.2422 1.0714 29 1 -1.3807 -7.0511 2.0580 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259874560.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:11 Heat of formation + Delta-G solvation = 51.524428 kcal Electronic energy + Delta-G solvation = -14913.982298 eV Core-core repulsion = 12249.123620 eV Total energy + Delta-G solvation = -2664.858678 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.84349 -38.96256 -37.40619 -35.74513 -34.71411 -33.42187 -30.60591 -29.84533 -27.25115 -24.66165 -23.78058 -23.31617 -21.22365 -18.93610 -18.55672 -17.90449 -17.05272 -16.96290 -16.45123 -15.76202 -15.32409 -14.88022 -14.68533 -14.11213 -13.92934 -13.82141 -13.18491 -13.01533 -12.81762 -12.53899 -12.28567 -12.09199 -11.97539 -11.80425 -11.48225 -11.24853 -10.93154 -10.53176 -9.55880 -8.92576 -8.16917 -6.29626 -0.37079 0.13346 0.68717 1.41648 1.44550 1.55653 1.74655 1.79425 2.40646 2.44452 3.15727 3.19004 3.40811 3.61528 3.89316 4.13536 4.29383 4.39408 4.65969 4.77386 4.82164 4.87861 4.97131 5.13299 5.33700 5.51116 5.60752 5.71356 5.87453 6.02421 6.24238 6.88129 6.91377 7.39668 8.95431 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.063119 B = 0.003827 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.500296 B = 7313.871422 C = 7484.751795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.972 3.028 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.043 3.957 10 C -0.026 4.026 11 C 0.051 3.949 12 C -0.089 4.089 13 N -0.364 5.364 14 C 0.070 3.930 15 C -0.067 4.067 16 Cl -0.023 7.023 17 C -0.081 4.081 18 C -0.080 4.080 19 C 0.195 3.805 20 N -0.529 5.529 21 H 0.262 0.738 22 H -0.019 1.019 23 H -0.016 1.016 24 H 0.090 0.910 25 H 0.065 0.935 26 H 0.220 0.780 27 H 0.200 0.800 28 H 0.184 0.816 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 -22.699 -3.137 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.087 0.913 9 C 0.005 3.995 10 C -0.064 4.064 11 C -0.080 4.080 12 C -0.218 4.218 13 N -0.037 5.037 14 C -0.054 4.054 15 C -0.097 4.097 16 Cl 0.006 6.994 17 C -0.104 4.104 18 C -0.101 4.101 19 C -0.048 4.048 20 N -0.250 5.250 21 H 0.071 0.929 22 H -0.001 1.001 23 H 0.003 0.997 24 H 0.108 0.892 25 H 0.084 0.916 26 H 0.237 0.763 27 H 0.217 0.783 28 H 0.201 0.799 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -0.210 -22.227 -2.586 22.378 hybrid contribution 0.251 0.598 -0.621 0.898 sum 0.040 -21.629 -3.207 21.866 Atomic orbital electron populations 1.70157 1.08136 1.27699 1.51756 1.26102 0.95779 1.03770 0.94708 0.85342 0.78585 0.77864 0.78584 1.19471 1.21033 1.18376 1.21730 0.93833 0.91947 1.50440 0.91250 1.18776 0.93944 0.92512 0.94253 1.20004 0.96522 0.87609 1.02275 1.21395 0.96586 0.97249 0.92769 1.22882 1.03368 0.88726 1.06850 1.42838 1.27164 1.12723 1.20952 1.21799 0.99718 0.83112 1.00731 1.20145 1.00667 0.90619 0.98279 1.98399 1.94427 1.23530 1.83039 1.21228 0.99832 0.95598 0.93791 1.20495 0.95648 0.92344 1.01591 1.21629 1.00051 0.93382 0.89755 1.70630 1.14873 1.10337 1.29198 0.92901 1.00063 0.99708 0.89197 0.91610 0.76310 0.78285 0.79851 0.81266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.99 13.29 21.45 0.28 -59.71 15 2 C -0.01 -0.38 5.46 84.65 0.46 0.08 15 3 Si 0.97 45.41 29.54 68.60 2.03 47.43 15 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 15 6 H -0.26 -11.45 7.11 99.48 0.71 -10.75 15 7 C -0.54 -31.98 9.11 25.60 0.23 -31.75 15 8 H 0.07 3.81 7.74 -2.91 -0.02 3.79 15 9 C 0.04 2.44 4.94 29.85 0.15 2.59 15 10 C -0.03 -1.15 5.71 29.85 0.17 -0.98 15 11 C 0.05 2.09 6.33 41.58 0.26 2.35 15 12 C -0.09 -2.78 11.63 83.19 0.97 -1.81 15 13 N -0.36 -10.49 2.95 -352.04 -1.04 -11.52 15 14 C 0.07 1.38 10.70 83.23 0.89 2.27 15 15 C -0.07 -1.17 6.28 22.10 0.14 -1.03 15 16 Cl -0.02 -0.31 28.94 -2.72 -0.08 -0.38 15 17 C -0.08 -1.41 9.86 22.32 0.22 -1.19 15 18 C -0.08 -1.99 10.10 22.41 0.23 -1.76 15 19 C 0.20 6.68 7.81 134.11 1.05 7.73 15 20 N -0.53 -23.09 11.29 -182.41 -2.06 -25.15 15 21 H 0.26 15.69 8.31 -92.71 -0.77 14.92 15 22 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 15 23 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 15 24 H 0.09 3.48 8.10 -2.39 -0.02 3.46 15 25 H 0.07 2.89 8.14 -2.39 -0.02 2.87 15 26 H 0.22 4.88 8.06 -2.91 -0.02 4.85 15 27 H 0.20 2.51 8.06 -2.91 -0.02 2.49 15 28 H 0.18 1.88 8.06 -2.91 -0.02 1.86 15 29 H 0.17 3.63 8.06 -2.91 -0.02 3.61 15 Total: -1.00 -76.71 276.07 5.06 -71.65 By element: Atomic # 1 Polarization: 0.04 SS G_CDS: 1.16 Total: 1.19 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 4.77 Total: -23.51 kcal Atomic # 7 Polarization: -93.57 SS G_CDS: -2.81 Total: -96.38 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.38 kcal Total: -76.71 5.06 -71.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259874560.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.174 kcal (2) G-P(sol) polarization free energy of solvation -76.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds