Wall clock time and date at job start Mon Mar 30 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 2 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 2 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 C 1.38727 * 119.66019 * 300.00070 * 12 2 1 14 14 C 1.36744 * 120.41605 * 179.97438 * 13 12 2 15 15 C 1.39419 * 119.71234 * 0.02562 * 14 13 12 16 16 C 1.46767 * 134.35300 * 180.02562 * 15 14 13 17 17 C 1.34177 * 106.16711 * 179.97438 * 16 15 14 18 18 Cl 1.73604 * 124.93392 * 180.02562 * 17 16 15 19 19 O 1.34443 * 110.12591 * 359.97438 * 17 16 15 20 20 C 1.34841 * 110.89450 * 0.02562 * 19 17 16 21 21 C 1.37872 * 119.65336 * 119.73126 * 12 2 1 22 22 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 24 24 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 25 25 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 26 26 H 1.07998 * 119.79300 * 0.02562 * 13 12 2 27 27 H 1.07996 * 120.14580 * 180.02562 * 14 13 12 28 28 H 1.07998 * 126.91503 * 359.96276 * 16 15 14 29 29 H 1.08007 * 120.08984 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 2.1467 -0.8526 3.5566 8 14 0.6299 1.2829 2.6540 9 1 -0.7974 0.8766 2.7062 10 1 0.9857 2.0024 3.9035 11 1 0.8478 2.1772 1.4887 12 6 2.0323 -0.7105 -1.2304 13 6 1.6929 -2.0388 -1.4428 14 6 2.1397 -2.6983 -2.5541 15 6 2.9419 -2.0303 -3.4783 16 6 3.5821 -2.4083 -4.7437 17 6 4.2319 -1.3163 -5.1745 18 17 5.1594 -1.2245 -6.6391 19 8 4.0594 -0.3033 -4.3076 20 6 3.2891 -0.6852 -3.2688 21 6 2.8199 -0.0321 -2.1361 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.9153 -0.5190 4.4376 26 1 1.0711 -2.5549 -0.7263 27 1 1.8725 -3.7322 -2.7153 28 1 3.5390 -3.3716 -5.2301 29 1 3.0744 1.0033 -1.9635 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259879819.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:26 Heat of formation + Delta-G solvation = 24.933951 kcal Electronic energy + Delta-G solvation = -15349.159229 eV Core-core repulsion = 12650.854751 eV Total energy + Delta-G solvation = -2698.304478 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.25276 -38.15058 -37.07079 -34.43194 -32.43089 -31.23263 -30.10496 -28.00722 -25.13316 -23.05591 -22.68265 -21.29624 -19.79469 -17.51830 -17.02739 -16.26881 -16.18800 -15.40154 -14.61373 -14.22248 -13.67863 -13.10396 -12.99408 -12.81172 -12.51506 -12.26934 -12.05867 -11.91095 -11.43742 -11.17725 -11.02937 -10.75625 -10.36402 -10.03581 -9.76399 -9.48320 -9.17715 -8.64876 -8.21311 -7.72739 -6.15143 -4.16290 1.09378 1.13933 1.77003 2.42430 3.22082 3.32921 3.35253 3.40676 4.14858 4.33531 4.82044 5.03921 5.14454 5.17509 5.50539 5.61187 5.82197 5.86231 6.04339 6.26558 6.26979 6.44828 6.53359 6.58453 6.76548 6.84330 6.91722 7.02454 7.40734 7.43700 7.62599 8.40860 8.88199 9.44887 10.97388 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.048646 B = 0.004898 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.447752 B = 5714.948293 C = 5845.050550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.038 3.962 3 H 0.039 0.961 4 C -0.513 4.513 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.266 1.266 12 C 0.013 3.987 13 C -0.111 4.111 14 C -0.073 4.073 15 C -0.153 4.153 16 C -0.161 4.161 17 C 0.049 3.951 18 Cl 0.015 6.985 19 O -0.193 6.193 20 C 0.067 3.933 21 C -0.124 4.124 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.032 0.968 25 H 0.265 0.735 26 H 0.137 0.863 27 H 0.124 0.876 28 H 0.162 0.838 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 -1.534 -16.171 16.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.019 3.981 3 H 0.057 0.943 4 C -0.551 4.551 5 H 0.096 0.904 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.191 1.191 12 C 0.012 3.988 13 C -0.129 4.129 14 C -0.091 4.091 15 C -0.154 4.154 16 C -0.182 4.182 17 C -0.025 4.025 18 Cl 0.043 6.957 19 O -0.097 6.097 20 C 0.021 3.979 21 C -0.142 4.142 22 H 0.075 0.925 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.155 0.845 27 H 0.142 0.858 28 H 0.180 0.820 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.061 -1.265 -16.128 16.212 hybrid contribution -0.333 0.697 0.012 0.772 sum 0.728 -0.568 -16.115 16.142 Atomic orbital electron populations 1.22170 0.97918 1.01208 0.98928 1.18404 0.92242 0.96369 0.91057 0.94254 1.20898 1.32612 1.13728 0.87841 0.90366 1.24983 0.95624 0.96618 0.95730 1.69880 1.45168 1.40291 0.97991 0.86851 0.80584 0.83717 0.77089 1.20478 1.22419 1.19059 1.20098 0.91551 0.93558 0.93562 1.20844 1.00818 0.94557 0.96711 1.20233 0.96411 0.99399 0.93080 1.19618 1.04522 0.94395 0.96841 1.22120 1.01288 0.98413 0.96343 1.22034 1.02413 0.88156 0.89848 1.98414 1.71329 1.98191 1.27737 1.83815 1.59662 1.37285 1.28899 1.19527 0.95159 0.93888 0.89349 1.19913 1.02173 1.00804 0.91341 0.92469 0.93796 0.94870 0.92465 0.84549 0.85801 0.82011 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 8.48 37.16 0.32 -2.63 15 2 C 0.04 0.85 2.06 -92.92 -0.19 0.66 15 3 H 0.04 0.89 6.90 -51.93 -0.36 0.53 15 4 C -0.51 -13.66 8.81 -34.44 -0.30 -13.97 15 5 H 0.08 2.27 7.84 -52.49 -0.41 1.86 15 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 15 7 N -0.90 -26.51 13.96 55.43 0.77 -25.74 15 8 Si 0.89 21.06 24.37 -169.99 -4.14 16.92 15 9 H -0.28 -6.40 6.88 56.52 0.39 -6.01 15 10 H -0.30 -7.12 7.11 56.52 0.40 -6.72 15 11 H -0.27 -6.00 6.52 56.52 0.37 -5.63 15 12 C 0.01 0.25 4.74 -104.58 -0.50 -0.25 15 13 C -0.11 -2.02 8.62 -39.94 -0.34 -2.37 15 14 C -0.07 -1.17 10.05 -39.68 -0.40 -1.57 15 15 C -0.15 -2.52 6.40 -105.16 -0.67 -3.19 15 16 C -0.16 -2.23 11.09 -37.57 -0.42 -2.64 15 17 C 0.05 0.70 7.84 29.30 0.23 0.93 15 18 Cl 0.01 0.16 29.28 -51.86 -1.52 -1.36 15 19 O -0.19 -3.26 10.58 3.83 0.04 -3.22 15 20 C 0.07 1.21 7.42 -38.48 -0.29 0.92 15 21 C -0.12 -2.31 9.68 -39.47 -0.38 -2.69 15 22 H 0.06 1.10 7.36 -51.93 -0.38 0.72 15 23 H 0.04 0.93 3.29 -51.93 -0.17 0.76 15 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 26 H 0.14 2.44 7.54 -52.49 -0.40 2.05 15 27 H 0.12 1.60 8.06 -52.49 -0.42 1.18 15 28 H 0.16 1.70 8.06 -52.49 -0.42 1.28 15 29 H 0.13 2.23 7.93 -52.48 -0.42 1.82 15 LS Contribution 262.74 15.07 3.96 3.96 Total: -1.00 -28.77 262.74 -6.51 -35.28 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -2.58 Total: -0.97 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -3.04 Total: -24.88 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.77 Total: -25.74 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: 0.04 Total: -3.22 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.14 Total: 16.92 kcal Atomic # 17 Polarization: 0.16 SS G_CDS: -1.52 Total: -1.36 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.77 -6.51 -35.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879819.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.215 kcal (2) G-P(sol) polarization free energy of solvation -28.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds