Wall clock time and date at job start Mon Mar 30 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 2 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 2 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 C 1.38727 * 119.66019 * 300.00070 * 12 2 1 14 14 C 1.36744 * 120.41605 * 179.97438 * 13 12 2 15 15 C 1.39419 * 119.71234 * 0.02562 * 14 13 12 16 16 C 1.46767 * 134.35300 * 180.02562 * 15 14 13 17 17 C 1.34177 * 106.16711 * 179.97438 * 16 15 14 18 18 Cl 1.73604 * 124.93392 * 180.02562 * 17 16 15 19 19 O 1.34443 * 110.12591 * 359.97438 * 17 16 15 20 20 C 1.34841 * 110.89450 * 0.02562 * 19 17 16 21 21 C 1.37872 * 119.65336 * 119.73126 * 12 2 1 22 22 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 24 24 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 25 25 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 26 26 H 1.07998 * 119.79300 * 0.02562 * 13 12 2 27 27 H 1.07996 * 120.14580 * 180.02562 * 14 13 12 28 28 H 1.07998 * 126.91503 * 359.96276 * 16 15 14 29 29 H 1.08007 * 120.08984 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 2.1467 -0.8526 3.5566 8 14 0.6299 1.2829 2.6540 9 1 -0.7974 0.8766 2.7062 10 1 0.9857 2.0024 3.9035 11 1 0.8478 2.1772 1.4887 12 6 2.0323 -0.7105 -1.2304 13 6 1.6929 -2.0388 -1.4428 14 6 2.1397 -2.6983 -2.5541 15 6 2.9419 -2.0303 -3.4783 16 6 3.5821 -2.4083 -4.7437 17 6 4.2319 -1.3163 -5.1745 18 17 5.1594 -1.2245 -6.6391 19 8 4.0594 -0.3033 -4.3076 20 6 3.2891 -0.6852 -3.2688 21 6 2.8199 -0.0321 -2.1361 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.9153 -0.5190 4.4376 26 1 1.0711 -2.5549 -0.7263 27 1 1.8725 -3.7322 -2.7153 28 1 3.5390 -3.3716 -5.2301 29 1 3.0744 1.0033 -1.9635 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259879819.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:26 Heat of formation + Delta-G solvation = 8.849157 kcal Electronic energy + Delta-G solvation = -15349.856718 eV Core-core repulsion = 12650.854751 eV Total energy + Delta-G solvation = -2699.001967 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.49751 -39.56506 -38.07255 -36.10105 -34.04326 -32.87854 -31.43393 -29.38968 -27.07067 -24.41478 -24.18283 -22.52768 -21.32655 -18.93968 -18.62942 -17.83778 -17.44168 -16.96974 -16.28749 -15.61777 -14.99540 -14.77926 -14.43107 -14.20286 -14.06118 -13.71672 -13.42571 -13.21207 -12.89998 -12.63775 -12.46665 -12.28131 -12.07532 -11.71708 -11.28675 -11.22039 -10.86880 -10.71011 -9.56322 -9.03918 -8.27654 -6.32384 -0.12179 0.02276 0.39948 1.20599 1.34144 1.40123 1.49883 2.17291 2.34477 2.76783 3.08552 3.61127 3.83566 3.96685 4.06284 4.28894 4.42664 4.55993 4.69640 4.72335 4.88019 4.89848 5.08781 5.17697 5.25390 5.37205 5.51055 5.59739 5.63108 5.88462 6.06969 6.31656 6.73803 7.32250 8.88510 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.048646 B = 0.004898 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.447752 B = 5714.948293 C = 5845.050550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.039 3.961 3 H 0.036 0.964 4 C -0.509 4.509 5 H 0.038 0.962 6 C 0.015 3.985 7 N -0.947 5.947 8 Si 0.947 3.053 9 H -0.263 1.263 10 H -0.302 1.302 11 H -0.246 1.246 12 C -0.011 4.011 13 C -0.126 4.126 14 C -0.061 4.061 15 C -0.157 4.157 16 C -0.151 4.151 17 C 0.041 3.959 18 Cl 0.044 6.956 19 O -0.207 6.207 20 C 0.050 3.950 21 C -0.131 4.131 22 H 0.060 0.940 23 H 0.035 0.965 24 H 0.062 0.938 25 H 0.266 0.734 26 H 0.131 0.869 27 H 0.159 0.841 28 H 0.200 0.800 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.253 -1.566 -18.658 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.020 3.980 3 H 0.054 0.946 4 C -0.547 4.547 5 H 0.056 0.944 6 C -0.182 4.182 7 N -0.587 5.587 8 Si 0.774 3.226 9 H -0.189 1.189 10 H -0.230 1.230 11 H -0.170 1.170 12 C -0.012 4.012 13 C -0.144 4.144 14 C -0.079 4.079 15 C -0.158 4.158 16 C -0.171 4.171 17 C -0.032 4.032 18 Cl 0.073 6.927 19 O -0.111 6.111 20 C 0.003 3.997 21 C -0.150 4.150 22 H 0.079 0.921 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.149 0.851 27 H 0.177 0.823 28 H 0.217 0.783 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.455 -1.297 -18.652 18.702 hybrid contribution -0.001 0.612 0.615 0.867 sum 0.454 -0.685 -18.037 18.056 Atomic orbital electron populations 1.22091 0.96107 1.01898 0.99842 1.18285 0.93751 0.95700 0.90255 0.94599 1.21138 1.31222 1.12460 0.89912 0.94386 1.25823 0.97227 0.99854 0.95337 1.70033 1.47521 1.42557 0.98630 0.85870 0.79296 0.80104 0.77287 1.18935 1.23027 1.16984 1.19908 0.93376 0.94474 0.93414 1.20866 1.01631 0.94167 0.97748 1.20518 0.94967 1.00721 0.91679 1.19998 1.04098 0.93885 0.97849 1.22498 0.99947 0.99687 0.94948 1.22483 1.02613 0.87797 0.90355 1.98428 1.70534 1.98083 1.25685 1.83798 1.59678 1.38493 1.29106 1.19571 0.95801 0.94728 0.89617 1.19906 1.02124 1.01155 0.91806 0.92052 0.94634 0.91950 0.92507 0.85064 0.82302 0.78343 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.57 8.48 71.98 0.61 -4.96 15 2 C 0.04 1.73 2.06 -12.29 -0.03 1.70 15 3 H 0.04 1.60 6.90 -2.39 -0.02 1.59 15 4 C -0.51 -27.90 8.81 25.60 0.23 -27.68 15 5 H 0.04 2.32 7.84 -2.91 -0.02 2.30 15 6 C 0.01 0.84 5.45 84.66 0.46 1.30 15 7 N -0.95 -58.00 13.96 21.45 0.30 -57.70 15 8 Si 0.95 43.44 24.37 68.60 1.67 45.11 15 9 H -0.26 -11.39 6.88 99.48 0.68 -10.71 15 10 H -0.30 -14.02 7.11 99.48 0.71 -13.31 15 11 H -0.25 -10.39 6.52 99.48 0.65 -9.74 15 12 C -0.01 -0.45 4.74 -19.83 -0.09 -0.55 15 13 C -0.13 -4.52 8.62 22.04 0.19 -4.33 15 14 C -0.06 -1.82 10.05 22.20 0.22 -1.60 15 15 C -0.16 -4.83 6.40 -20.21 -0.13 -4.95 15 16 C -0.15 -3.65 11.09 23.57 0.26 -3.39 15 17 C 0.04 1.05 7.84 66.89 0.52 1.58 15 18 Cl 0.04 0.86 29.28 -2.72 -0.08 0.78 15 19 O -0.21 -6.67 10.58 -9.20 -0.10 -6.77 15 20 C 0.05 1.72 7.42 22.98 0.17 1.89 15 21 C -0.13 -4.87 9.68 22.34 0.22 -4.65 15 22 H 0.06 2.31 7.36 -2.39 -0.02 2.29 15 23 H 0.04 1.43 3.29 -2.39 -0.01 1.43 15 24 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 25 H 0.27 15.29 8.31 -92.71 -0.77 14.52 15 26 H 0.13 4.73 7.54 -2.91 -0.02 4.71 15 27 H 0.16 3.54 8.06 -2.91 -0.02 3.52 15 28 H 0.20 3.20 8.06 -2.91 -0.02 3.18 15 29 H 0.13 4.63 7.93 -2.91 -0.02 4.60 15 Total: -1.00 -63.33 262.74 5.52 -57.81 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 1.09 Total: 6.41 kcal Atomic # 6 Polarization: -48.27 SS G_CDS: 2.63 Total: -45.63 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.30 Total: -57.70 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: -0.10 Total: -6.77 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.67 Total: 45.11 kcal Atomic # 17 Polarization: 0.86 SS G_CDS: -0.08 Total: 0.78 kcal Total: -63.33 5.52 -57.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879819.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.656 kcal (2) G-P(sol) polarization free energy of solvation -63.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds