Wall clock time and date at job start Mon Mar 30 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38726 * 119.65950 * 269.72718 * 11 10 9 13 13 C 1.36745 * 120.41605 * 179.75729 * 12 11 10 14 14 C 1.39415 * 119.71405 * 0.51129 * 13 12 11 15 15 C 1.46762 * 134.35500 * 179.78525 * 14 13 12 16 16 C 1.34176 * 106.17533 * 179.97438 * 15 14 13 17 17 Cl 1.73593 * 124.94629 * 179.97438 * 16 15 14 18 18 O 1.34453 * 110.11965 * 0.02562 * 16 15 14 19 19 C 1.34845 * 110.89225 * 359.97438 * 18 16 15 20 20 C 1.37871 * 119.65498 * 90.00019 * 11 10 9 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 1.08004 * 119.79427 * 359.97438 * 12 11 10 27 27 H 1.08004 * 120.14702 * 180.25783 * 13 12 11 28 28 H 1.08007 * 126.91759 * 359.92647 * 15 14 13 29 29 H 1.07998 * 120.09428 * 0.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.1538 -5.5642 1.2069 13 6 0.4659 -6.7459 1.2256 14 6 0.1119 -7.3585 0.0243 15 6 -0.6009 -8.5923 -0.3272 16 6 -0.6285 -8.6390 -1.6679 17 17 -1.3596 -9.9050 -2.6039 18 8 -0.0066 -7.5630 -2.1810 19 6 0.4564 -6.7619 -1.2001 20 6 1.1501 -5.5583 -1.1967 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 1.4327 -5.0910 2.1369 27 1 0.2014 -7.2048 2.1669 28 1 -1.0186 -9.3173 0.3558 29 1 1.4222 -5.0876 -2.1298 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259889767.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:19 Heat of formation + Delta-G solvation = 10.101109 kcal Electronic energy + Delta-G solvation = -14883.385442 eV Core-core repulsion = 12184.437764 eV Total energy + Delta-G solvation = -2698.947679 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.39903 -38.19041 -37.15321 -34.11005 -32.71750 -31.17445 -30.29448 -28.23552 -25.00373 -23.18025 -22.00267 -21.39140 -20.13945 -17.63937 -17.04900 -16.36272 -16.27888 -15.29776 -14.50496 -14.45580 -13.87344 -13.21896 -12.95338 -12.68844 -12.57252 -12.38353 -11.98759 -11.80966 -11.48053 -11.12896 -10.93965 -10.81262 -10.57932 -10.02305 -9.89909 -9.48196 -9.16246 -8.43911 -8.36566 -7.88202 -6.02690 -4.06353 0.96205 0.99329 1.55406 2.26265 3.26620 3.31898 3.36689 3.38717 3.91785 4.43689 4.66557 4.88647 4.98661 5.31505 5.32928 5.37471 5.62628 5.66327 5.90010 6.09602 6.29509 6.39354 6.53854 6.55148 6.67505 6.90841 6.95526 7.23266 7.62844 7.74837 7.95956 8.35521 9.00222 9.57935 11.08222 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.046834 B = 0.003963 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.707414 B = 7063.857138 C = 7322.903979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.081 4.081 11 C -0.019 4.019 12 C -0.127 4.127 13 C -0.067 4.067 14 C -0.149 4.149 15 C -0.163 4.163 16 C 0.054 3.946 17 Cl 0.019 6.981 18 O -0.191 6.191 19 C 0.070 3.930 20 C -0.112 4.112 21 H 0.262 0.738 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.133 0.867 27 H 0.127 0.873 28 H 0.164 0.836 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.727 -17.911 -0.529 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.118 4.118 11 C -0.019 4.019 12 C -0.145 4.145 13 C -0.085 4.085 14 C -0.150 4.150 15 C -0.184 4.184 16 C -0.020 4.020 17 Cl 0.048 6.952 18 O -0.094 6.094 19 C 0.023 3.977 20 C -0.131 4.131 21 H 0.071 0.929 22 H 0.038 0.962 23 H 0.037 0.963 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.151 0.849 27 H 0.145 0.855 28 H 0.182 0.818 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.920 -17.847 -0.899 17.894 hybrid contribution 0.142 0.691 -0.139 0.719 sum -0.777 -17.156 -1.037 17.205 Atomic orbital electron populations 1.69958 1.06076 1.26820 1.50387 1.25028 0.94855 0.99298 0.95228 0.86637 0.79559 0.83036 0.78642 1.20212 1.21293 1.20191 1.21189 0.93041 0.90856 1.51183 0.92534 1.19093 0.93618 0.90308 0.97749 1.20922 0.98432 0.90472 1.01974 1.20230 0.94845 0.95759 0.91099 1.20825 0.99868 0.95295 0.98474 1.20207 0.97357 0.95114 0.95836 1.19647 1.04739 0.96215 0.94435 1.22131 1.04812 0.99135 0.92275 1.22093 1.02066 0.88386 0.89417 1.98423 1.79084 1.42922 1.74814 1.83845 1.61045 1.28946 1.35590 1.19534 0.99830 0.93610 0.84707 1.19881 1.01625 0.91852 0.99737 0.92864 0.96241 0.96299 0.91702 0.91484 0.84945 0.85546 0.81825 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.64 13.29 55.43 0.74 -25.91 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 15 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 15 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 15 9 C 0.03 0.74 4.95 -27.88 -0.14 0.60 15 10 C -0.08 -1.58 5.27 -27.89 -0.15 -1.73 15 11 C -0.02 -0.34 5.13 -104.58 -0.54 -0.87 15 12 C -0.13 -1.98 9.62 -39.94 -0.38 -2.36 15 13 C -0.07 -0.95 10.05 -39.68 -0.40 -1.35 15 14 C -0.15 -2.26 6.40 -105.17 -0.67 -2.93 15 15 C -0.16 -2.08 11.09 -37.57 -0.42 -2.50 15 16 C 0.05 0.73 7.84 29.30 0.23 0.96 15 17 Cl 0.02 0.20 29.28 -51.86 -1.52 -1.32 15 18 O -0.19 -3.06 10.58 3.79 0.04 -3.02 15 19 C 0.07 1.17 7.42 -38.48 -0.29 0.88 15 20 C -0.11 -1.93 9.70 -39.46 -0.38 -2.32 15 21 H 0.26 7.38 8.31 -40.82 -0.34 7.05 15 22 H 0.02 0.52 8.14 -51.93 -0.42 0.09 15 23 H 0.02 0.51 8.14 -51.93 -0.42 0.08 15 24 H 0.06 1.23 8.08 -51.93 -0.42 0.81 15 25 H 0.07 1.24 8.08 -51.93 -0.42 0.82 15 26 H 0.13 1.87 8.06 -52.48 -0.42 1.44 15 27 H 0.13 1.39 8.06 -52.48 -0.42 0.97 15 28 H 0.16 1.55 8.06 -52.48 -0.42 1.13 15 29 H 0.13 2.18 8.06 -52.49 -0.42 1.76 15 LS Contribution 276.76 15.07 4.17 4.17 Total: -1.00 -29.89 276.76 -8.05 -37.94 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: -2.92 Total: -3.31 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -3.54 Total: -24.87 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 8 Polarization: -3.06 SS G_CDS: 0.04 Total: -3.02 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -1.52 Total: -1.32 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.89 -8.05 -37.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889767.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.042 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds