Wall clock time and date at job start Mon Mar 30 2020 05:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38726 * 119.65950 * 269.72718 * 11 10 9 13 13 C 1.36745 * 120.41605 * 179.75729 * 12 11 10 14 14 C 1.39415 * 119.71405 * 0.51129 * 13 12 11 15 15 C 1.46762 * 134.35500 * 179.78525 * 14 13 12 16 16 C 1.34176 * 106.17533 * 179.97438 * 15 14 13 17 17 Cl 1.73593 * 124.94629 * 179.97438 * 16 15 14 18 18 O 1.34453 * 110.11965 * 0.02562 * 16 15 14 19 19 C 1.34845 * 110.89225 * 359.97438 * 18 16 15 20 20 C 1.37871 * 119.65498 * 90.00019 * 11 10 9 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 1.08004 * 119.79427 * 359.97438 * 12 11 10 27 27 H 1.08004 * 120.14702 * 180.25783 * 13 12 11 28 28 H 1.08007 * 126.91759 * 359.92647 * 15 14 13 29 29 H 1.07998 * 120.09428 * 0.02562 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.1538 -5.5642 1.2069 13 6 0.4659 -6.7459 1.2256 14 6 0.1119 -7.3585 0.0243 15 6 -0.6009 -8.5923 -0.3272 16 6 -0.6285 -8.6390 -1.6679 17 17 -1.3596 -9.9050 -2.6039 18 8 -0.0066 -7.5630 -2.1810 19 6 0.4564 -6.7619 -1.2001 20 6 1.1501 -5.5583 -1.1967 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 1.4327 -5.0910 2.1369 27 1 0.2014 -7.2048 2.1669 28 1 -1.0186 -9.3173 0.3558 29 1 1.4222 -5.0876 -2.1298 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259889767.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:18 Heat of formation + Delta-G solvation = -5.293465 kcal Electronic energy + Delta-G solvation = -14884.053001 eV Core-core repulsion = 12184.437764 eV Total energy + Delta-G solvation = -2699.615237 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.54582 -39.44868 -38.09118 -35.85325 -34.30048 -32.71492 -31.49332 -29.79038 -26.77654 -24.41224 -23.64166 -22.54390 -21.61055 -18.75597 -18.60976 -18.08766 -17.48381 -16.57465 -16.45458 -15.73636 -15.02607 -14.59513 -14.33305 -14.25175 -14.06777 -13.69959 -13.34910 -13.15383 -12.79645 -12.70476 -12.48976 -12.47035 -12.02401 -11.73175 -11.60237 -11.21925 -10.88874 -10.53979 -9.63976 -9.09693 -8.18278 -6.30169 -0.19752 -0.00223 0.32223 1.14831 1.42397 1.45250 1.53090 2.13049 2.42455 2.68737 3.14925 3.56010 3.78058 3.90556 4.04144 4.17941 4.35980 4.54670 4.70429 4.79105 4.85571 5.00155 5.16981 5.23088 5.34135 5.49882 5.51255 5.54104 5.81881 5.85100 6.01853 6.23291 6.86880 7.39278 8.92982 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.046834 B = 0.003963 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.707414 B = 7063.857138 C = 7322.903979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.035 3.965 10 C -0.066 4.066 11 C -0.039 4.039 12 C -0.135 4.135 13 C -0.056 4.056 14 C -0.155 4.155 15 C -0.151 4.151 16 C 0.041 3.959 17 Cl 0.044 6.956 18 O -0.209 6.209 19 C 0.047 3.953 20 C -0.126 4.126 21 H 0.263 0.737 22 H -0.005 1.005 23 H -0.013 1.013 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.147 0.853 27 H 0.166 0.834 28 H 0.202 0.798 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 -19.111 0.422 19.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.002 4.002 10 C -0.103 4.103 11 C -0.039 4.039 12 C -0.153 4.153 13 C -0.074 4.074 14 C -0.156 4.156 15 C -0.171 4.171 16 C -0.032 4.032 17 Cl 0.073 6.927 18 O -0.113 6.113 19 C 0.000 4.000 20 C -0.145 4.145 21 H 0.072 0.928 22 H 0.014 0.986 23 H 0.005 0.995 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.165 0.835 27 H 0.183 0.817 28 H 0.219 0.781 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.518 -19.067 0.050 19.074 hybrid contribution -0.054 0.930 -0.482 1.049 sum -0.572 -18.137 -0.432 18.152 Atomic orbital electron populations 1.70106 1.07897 1.27818 1.51613 1.26003 0.95737 1.03455 0.94767 0.85490 0.78218 0.77999 0.79276 1.19246 1.21135 1.18859 1.21682 0.93765 0.92039 1.50580 0.91588 1.18928 0.94018 0.92235 0.94979 1.20634 0.97321 0.89704 1.02665 1.20059 0.96168 0.95381 0.92270 1.21034 1.00115 0.96024 0.98132 1.20581 0.95590 0.94135 0.97081 1.20065 1.04391 0.96993 0.94132 1.22533 1.03597 0.98538 0.92403 1.22542 1.01978 0.88283 0.90394 1.98432 1.78499 1.41406 1.74373 1.83815 1.61601 1.29796 1.36077 1.19623 1.00578 0.93894 0.85890 1.19891 1.02360 0.92634 0.99615 0.92830 0.98619 0.99486 0.91470 0.90262 0.83546 0.81685 0.78116 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.73 15 2 C 0.00 -0.11 5.46 84.66 0.46 0.35 15 3 Si 0.97 43.83 29.54 68.60 2.03 45.86 15 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 5 H -0.29 -12.80 7.11 99.48 0.71 -12.09 15 6 H -0.26 -11.37 7.11 99.48 0.71 -10.67 15 7 C -0.54 -30.35 9.11 25.60 0.23 -30.12 15 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 15 9 C 0.04 1.85 4.95 29.85 0.15 2.00 15 10 C -0.07 -2.64 5.27 29.85 0.16 -2.48 15 11 C -0.04 -1.37 5.13 -19.84 -0.10 -1.47 15 12 C -0.14 -4.07 9.62 22.04 0.21 -3.86 15 13 C -0.06 -1.45 10.05 22.20 0.22 -1.23 15 14 C -0.15 -4.40 6.40 -20.22 -0.13 -4.53 15 15 C -0.15 -3.42 11.09 23.57 0.26 -3.16 15 16 C 0.04 1.04 7.84 66.89 0.52 1.56 15 17 Cl 0.04 0.85 29.28 -2.72 -0.08 0.77 15 18 O -0.21 -6.65 10.58 -9.34 -0.10 -6.74 15 19 C 0.05 1.57 7.42 22.98 0.17 1.74 15 20 C -0.13 -4.49 9.70 22.35 0.22 -4.27 15 21 H 0.26 15.13 8.31 -92.71 -0.77 14.36 15 22 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 15 23 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 15 24 H 0.07 2.59 8.08 -2.39 -0.02 2.58 15 25 H 0.08 2.92 8.08 -2.39 -0.02 2.90 15 26 H 0.15 3.91 8.06 -2.91 -0.02 3.89 15 27 H 0.17 2.94 8.06 -2.91 -0.02 2.91 15 28 H 0.20 2.90 8.06 -2.91 -0.02 2.87 15 29 H 0.13 4.48 8.06 -2.91 -0.02 4.45 15 Total: -1.00 -65.36 276.76 5.67 -59.69 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 1.16 Total: 2.64 kcal Atomic # 6 Polarization: -47.85 SS G_CDS: 2.38 Total: -45.47 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.28 Total: -56.73 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.10 Total: -6.74 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 17 Polarization: 0.85 SS G_CDS: -0.08 Total: 0.77 kcal Total: -65.36 5.67 -59.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259889767.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.398 kcal (2) G-P(sol) polarization free energy of solvation -65.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds