Wall clock time and date at job start Mon Mar 30 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47151 * 2 1 4 4 C 1.50708 * 109.46875 * 240.00655 * 2 1 3 5 5 H 1.07991 * 119.99789 * 240.00567 * 4 2 1 6 6 C 1.37877 * 120.00008 * 59.99878 * 4 2 1 7 7 N 1.31514 * 120.00089 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99938 * 0.02562 * 6 4 2 9 9 H 1.48506 * 109.47297 * 269.99556 * 8 6 4 10 10 H 1.48503 * 109.47261 * 149.99737 * 8 6 4 11 11 H 1.48500 * 109.47454 * 29.99730 * 8 6 4 12 12 C 1.50703 * 109.47211 * 120.00993 * 2 1 3 13 13 O 1.34519 * 124.93275 * 60.01752 * 12 2 1 14 14 C 1.34803 * 110.89136 * 179.97438 * 13 12 2 15 15 C 1.38946 * 133.48731 * 180.02562 * 14 13 12 16 16 C 1.37846 * 119.82488 * 179.97438 * 15 14 13 17 17 C 1.38749 * 120.68328 * 359.97438 * 16 15 14 18 18 C 1.36735 * 120.41385 * 0.02562 * 17 16 15 19 19 C 1.39401 * 119.72352 * 359.97438 * 18 17 16 20 20 C 1.34053 * 124.93022 * 239.72360 * 12 2 1 21 21 Cl 1.73601 * 126.91272 * 0.02562 * 20 12 2 22 22 H 1.08998 * 109.46607 * 299.99478 * 1 2 3 23 23 H 1.09003 * 109.47241 * 59.99009 * 1 2 3 24 24 H 1.08996 * 109.47696 * 179.97438 * 1 2 3 25 25 H 0.96997 * 119.99848 * 180.02562 * 7 6 4 26 26 H 1.08003 * 120.08585 * 359.95718 * 15 14 13 27 27 H 1.08000 * 119.65695 * 180.02562 * 16 15 14 28 28 H 1.07997 * 119.79061 * 180.02562 * 17 16 15 29 29 H 1.08001 * 120.13823 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 2.1371 -0.8593 -3.5567 8 14 0.6258 1.2801 -2.6540 9 1 -0.8021 0.8748 -2.6992 10 1 0.9771 1.9958 -3.9068 11 1 0.8491 2.1775 -1.4921 12 6 2.0324 -0.7106 1.2304 13 8 1.7696 -1.9929 1.5405 14 6 2.3601 -2.3372 2.7024 15 6 2.3999 -3.5118 3.4435 16 6 3.1095 -3.5535 4.6246 17 6 3.7871 -2.4330 5.0834 18 6 3.7606 -1.2674 4.3692 19 6 3.0483 -1.2061 3.1725 20 6 2.8107 -0.1583 2.1718 21 17 3.4139 1.4692 2.2028 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.9030 -0.5275 -4.4376 26 1 1.8761 -4.3897 3.0953 27 1 3.1390 -4.4681 5.1983 28 1 4.3389 -2.4819 6.0105 29 1 4.2892 -0.3977 4.7307 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259895198.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:57 Heat of formation + Delta-G solvation = 1.614070 kcal Electronic energy + Delta-G solvation = -15653.848975 eV Core-core repulsion = 12954.533270 eV Total energy + Delta-G solvation = -2699.315704 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.51588 -38.92626 -37.69221 -36.51379 -33.93272 -33.07392 -31.34152 -29.71814 -27.23910 -24.76877 -23.76830 -22.52089 -21.63866 -18.98709 -18.47500 -17.74952 -17.34677 -16.83804 -16.07389 -15.37870 -15.17970 -14.96880 -14.64356 -14.47307 -14.14323 -13.47907 -13.41288 -13.15464 -12.99878 -12.87496 -12.59192 -12.24054 -12.03767 -11.69447 -11.41747 -11.35467 -10.82361 -10.69442 -9.60300 -9.02767 -8.36743 -6.45291 -0.06398 0.36419 0.97994 1.21530 1.30216 1.36102 1.46458 1.88210 2.27459 2.74636 2.97546 3.31101 3.80759 3.90345 4.13031 4.27239 4.33374 4.41180 4.52429 4.55963 4.72934 4.83736 4.93523 5.14112 5.26912 5.33343 5.39445 5.43553 5.49026 5.78890 6.12032 6.19678 6.57380 7.18612 8.79970 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.029980 B = 0.007361 C = 0.006479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.736237 B = 3802.951326 C = 4320.832098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 H 0.071 0.929 4 C -0.525 4.525 5 H 0.028 0.972 6 C 0.022 3.978 7 N -0.941 5.941 8 Si 0.946 3.054 9 H -0.258 1.258 10 H -0.292 1.292 11 H -0.240 1.240 12 C 0.098 3.902 13 O -0.195 6.195 14 C 0.015 3.985 15 C -0.116 4.116 16 C -0.084 4.084 17 C -0.124 4.124 18 C -0.082 4.082 19 C -0.133 4.133 20 C -0.170 4.170 21 Cl -0.024 7.024 22 H 0.067 0.933 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.271 0.729 26 H 0.147 0.853 27 H 0.177 0.823 28 H 0.170 0.830 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.264 -0.287 18.026 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.053 3.947 3 H 0.088 0.912 4 C -0.563 4.563 5 H 0.046 0.954 6 C -0.176 4.176 7 N -0.580 5.580 8 Si 0.771 3.229 9 H -0.183 1.183 10 H -0.219 1.219 11 H -0.163 1.163 12 C 0.049 3.951 13 O -0.097 6.097 14 C -0.031 4.031 15 C -0.134 4.134 16 C -0.101 4.101 17 C -0.141 4.141 18 C -0.100 4.100 19 C -0.135 4.135 20 C -0.198 4.198 21 Cl 0.004 6.996 22 H 0.086 0.914 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.165 0.835 27 H 0.195 0.805 28 H 0.187 0.813 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.167 -0.342 17.695 17.700 hybrid contribution -0.146 0.698 -0.995 1.224 sum 0.021 0.355 16.701 16.704 Atomic orbital electron populations 1.22093 0.95340 1.01968 1.00863 1.18158 0.94464 0.95213 0.86909 0.91169 1.20874 1.32512 1.12824 0.90055 0.95398 1.25820 0.96897 1.00127 0.94796 1.70019 1.46837 1.42316 0.98787 0.85887 0.79324 0.79553 0.78136 1.18315 1.21941 1.16343 1.22538 0.95788 0.81064 0.95725 1.84085 1.62466 1.27207 1.35913 1.20268 0.98469 0.97548 0.86846 1.20407 1.03471 0.94093 0.95407 1.21444 0.94547 1.00423 0.93725 1.21242 1.00134 0.91530 1.01207 1.20570 0.97487 1.00346 0.91625 1.19782 1.03697 0.91923 0.98063 1.21446 1.09154 0.89591 0.99635 1.98275 1.86745 1.16261 1.98281 0.91385 0.93170 0.92690 0.92003 0.83480 0.80528 0.81260 0.84119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.17 8.66 71.98 0.62 -5.55 15 2 C 0.07 3.43 2.27 -12.28 -0.03 3.40 15 3 H 0.07 3.31 6.34 -2.39 -0.02 3.29 15 4 C -0.52 -30.68 9.13 25.60 0.23 -30.45 15 5 H 0.03 1.85 7.98 -2.92 -0.02 1.83 15 6 C 0.02 1.28 5.45 84.65 0.46 1.74 15 7 N -0.94 -58.68 13.96 21.45 0.30 -58.38 15 8 Si 0.95 43.50 24.37 68.60 1.67 45.17 15 9 H -0.26 -11.09 6.87 99.48 0.68 -10.41 15 10 H -0.29 -13.32 7.11 99.48 0.71 -12.61 15 11 H -0.24 -10.07 6.53 99.48 0.65 -9.42 15 12 C 0.10 4.48 5.68 24.73 0.14 4.62 15 13 O -0.19 -8.80 10.58 -9.55 -0.10 -8.90 15 14 C 0.02 0.57 7.42 22.99 0.17 0.74 15 15 C -0.12 -3.14 10.07 22.35 0.23 -2.92 15 16 C -0.08 -1.62 10.01 22.30 0.22 -1.40 15 17 C -0.12 -2.40 9.98 22.04 0.22 -2.18 15 18 C -0.08 -2.18 10.05 22.20 0.22 -1.96 15 19 C -0.13 -4.75 6.40 -20.20 -0.13 -4.88 15 20 C -0.17 -6.88 6.94 23.56 0.16 -6.72 15 21 Cl -0.02 -0.86 28.45 -2.72 -0.08 -0.93 15 22 H 0.07 2.43 8.14 -2.39 -0.02 2.41 15 23 H 0.05 2.10 3.27 -2.39 -0.01 2.10 15 24 H 0.05 2.35 8.14 -2.39 -0.02 2.33 15 25 H 0.27 15.66 8.31 -92.71 -0.77 14.89 15 26 H 0.15 3.41 8.06 -2.91 -0.02 3.39 15 27 H 0.18 1.85 8.06 -2.91 -0.02 1.83 15 28 H 0.17 1.87 8.06 -2.91 -0.02 1.84 15 29 H 0.14 3.18 8.06 -2.91 -0.02 3.15 15 Total: -1.00 -69.39 264.33 5.41 -63.98 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 1.09 Total: 4.61 kcal Atomic # 6 Polarization: -48.08 SS G_CDS: 2.53 Total: -45.55 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.30 Total: -58.38 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.10 Total: -8.90 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.67 Total: 45.17 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.93 kcal Total: -69.39 5.41 -63.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259895198.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.596 kcal (2) G-P(sol) polarization free energy of solvation -69.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds