Wall clock time and date at job start Mon Mar 30 2020 06:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46806 * 2 1 4 4 C 1.50698 * 109.47060 * 240.00504 * 2 1 3 5 5 H 1.08007 * 119.99784 * 245.68827 * 4 2 1 6 6 C 1.37875 * 120.00357 * 65.40758 * 4 2 1 7 7 N 1.31517 * 120.00127 * 355.13022 * 6 4 2 8 8 Si 1.86800 * 120.00018 * 175.13343 * 6 4 2 9 9 H 1.48496 * 109.47475 * 95.00054 * 8 6 4 10 10 H 1.48501 * 109.46857 * 214.99952 * 8 6 4 11 11 H 1.48500 * 109.47037 * 334.99576 * 8 6 4 12 12 C 1.50696 * 109.47279 * 120.00024 * 2 1 3 13 13 C 1.36467 * 119.67684 * 239.72625 * 12 2 1 14 14 C 1.39917 * 119.80033 * 179.73364 * 13 12 2 15 15 C 1.45953 * 133.94839 * 180.18189 * 14 13 12 16 16 N 1.30237 * 107.80469 * 180.32261 * 15 14 13 17 17 N 1.39870 * 110.08093 * 0.02562 * 16 15 14 18 18 H 0.97004 * 125.46631 * 179.97438 * 17 16 15 19 19 C 1.37076 * 109.06946 * 359.97438 * 17 16 15 20 20 C 1.39359 * 133.82485 * 180.02562 * 19 17 16 21 21 Cl 1.73606 * 120.13857 * 359.97438 * 20 19 17 22 22 C 1.37712 * 119.71860 * 180.02562 * 20 19 17 23 23 H 1.08996 * 109.47553 * 54.92783 * 1 2 3 24 24 H 1.09001 * 109.46674 * 174.92785 * 1 2 3 25 25 H 1.09006 * 109.46825 * 294.92321 * 1 2 3 26 26 H 0.96993 * 120.00181 * 180.02562 * 7 6 4 27 27 H 1.08004 * 120.09576 * 0.02562 * 13 12 2 28 28 H 1.08006 * 126.09828 * 0.29011 * 15 14 13 29 29 H 1.08003 * 119.67444 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5754 -1.6389 -1.1341 6 6 1.7937 -0.1778 -2.4797 7 7 1.0467 0.8975 -2.6044 8 14 2.5312 -0.9836 -3.9950 9 1 1.5405 -1.9145 -4.5924 10 1 2.8889 0.0620 -4.9870 11 1 3.7506 -1.7386 -3.6102 12 6 2.0324 -0.7104 1.2304 13 6 2.8212 -0.0425 2.1215 14 6 3.2844 -0.6979 3.2676 15 6 4.1178 -0.2968 4.3967 16 7 4.2386 -1.3246 5.1874 17 7 3.5350 -2.4159 4.6673 18 1 3.4755 -3.2937 5.0760 19 6 2.9430 -2.0461 3.4876 20 6 2.1409 -2.7093 2.5609 21 17 1.7090 -4.3717 2.8138 22 6 1.6932 -2.0408 1.4433 23 1 -0.3634 0.5905 -0.8410 24 1 -0.3633 -1.0237 -0.0909 25 1 -0.3633 0.4331 0.9320 26 1 0.8785 1.2719 -3.4832 27 1 3.0831 0.9903 1.9449 28 1 4.5564 0.6783 4.5491 29 1 1.0712 -2.5554 0.7258 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259903071.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:06 Heat of formation + Delta-G solvation = 48.175444 kcal Electronic energy + Delta-G solvation = -15487.318745 eV Core-core repulsion = 12822.314845 eV Total energy + Delta-G solvation = -2665.003900 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.20619 -38.94846 -37.57911 -35.55540 -33.32010 -32.64914 -30.75273 -29.23032 -27.12439 -24.07208 -24.03367 -22.71203 -21.30562 -19.02403 -18.29146 -17.35568 -16.69323 -16.30645 -15.93461 -15.72427 -15.04021 -14.58903 -14.41247 -13.88265 -13.71060 -13.26260 -12.99313 -12.81287 -12.52631 -12.33075 -12.15147 -12.08874 -11.97171 -11.77356 -11.27521 -11.12613 -10.86610 -10.43287 -9.57289 -8.76619 -8.05474 -6.16993 -0.14116 0.51691 1.08490 1.43788 1.46909 1.48907 1.56123 1.69890 2.46429 2.78240 3.24232 3.60003 3.71784 3.96430 4.02891 4.44807 4.64652 4.67439 4.81968 5.01548 5.10158 5.29470 5.29827 5.43280 5.54624 5.70214 5.84541 6.05541 6.10488 6.25945 6.40414 6.57533 6.91581 7.50499 8.99371 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025488 B = 0.006658 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.282149 B = 4204.521045 C = 4671.727073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.078 3.922 3 H 0.020 0.980 4 C -0.520 4.520 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.946 3.054 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.271 1.271 12 C -0.083 4.083 13 C -0.045 4.045 14 C -0.178 4.178 15 C 0.091 3.909 16 N -0.266 5.266 17 N -0.507 5.507 18 H 0.446 0.554 19 C 0.113 3.887 20 C -0.070 4.070 21 Cl -0.069 7.069 22 C -0.046 4.046 23 H 0.052 0.948 24 H 0.030 0.970 25 H 0.029 0.971 26 H 0.261 0.739 27 H 0.144 0.856 28 H 0.238 0.762 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 -4.283 11.918 13.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.060 3.940 3 H 0.038 0.962 4 C -0.558 4.558 5 H 0.069 0.931 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.196 1.196 12 C -0.085 4.085 13 C -0.065 4.065 14 C -0.186 4.186 15 C -0.107 4.107 16 N -0.079 5.079 17 N -0.224 5.224 18 H 0.292 0.708 19 C -0.003 4.003 20 C -0.101 4.101 21 Cl -0.040 7.040 22 C -0.067 4.067 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.162 0.838 28 H 0.254 0.746 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.770 -4.771 12.928 14.287 hybrid contribution -0.319 -0.743 -1.702 1.885 sum 3.451 -5.514 11.226 12.974 Atomic orbital electron populations 1.21640 0.97537 0.99543 0.99102 1.17702 0.92935 0.94462 0.88905 0.96157 1.21386 1.35012 1.08087 0.91298 0.93064 1.25599 0.95350 0.95646 1.01378 1.70017 1.38239 1.23027 1.24064 0.85732 0.78933 0.78246 0.79888 1.20480 1.20973 1.19605 1.19881 0.97968 0.93595 0.97025 1.20513 0.94726 1.00490 0.90804 1.20061 1.06219 0.93002 0.99309 1.25701 0.96188 0.99479 0.89293 1.76493 1.14452 0.94792 1.22165 1.45857 1.45270 1.13220 1.18024 0.70818 1.18384 0.97395 0.94980 0.89542 1.19698 1.05922 0.86689 0.97744 1.98322 1.92391 1.16721 1.96575 1.20864 0.97491 0.94266 0.94070 0.92870 0.95059 0.95225 0.92995 0.83798 0.74597 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.69 71.98 0.63 -4.86 15 2 C 0.08 3.68 2.41 -12.29 -0.03 3.65 15 3 H 0.02 1.02 7.83 -2.39 -0.02 1.00 15 4 C -0.52 -27.04 8.19 25.60 0.21 -26.83 15 5 H 0.05 2.67 7.53 -2.91 -0.02 2.65 15 6 C 0.02 1.03 5.36 84.65 0.45 1.48 15 7 N -0.91 -50.54 11.60 21.45 0.25 -50.29 15 8 Si 0.95 42.40 29.54 68.60 2.03 44.43 15 9 H -0.28 -12.30 7.11 99.48 0.71 -11.60 15 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 15 11 H -0.27 -11.97 7.11 99.48 0.71 -11.27 15 12 C -0.08 -3.28 4.71 -20.11 -0.09 -3.37 15 13 C -0.04 -1.52 9.66 22.26 0.22 -1.31 15 14 C -0.18 -5.42 6.36 -20.25 -0.13 -5.55 15 15 C 0.09 2.17 12.28 86.93 1.07 3.24 15 16 N -0.27 -6.96 12.55 -53.07 -0.67 -7.62 15 17 N -0.51 -13.53 7.37 -51.48 -0.38 -13.91 15 18 H 0.45 9.74 8.96 -213.46 -1.91 7.83 15 19 C 0.11 3.53 7.13 39.22 0.28 3.81 15 20 C -0.07 -2.29 6.34 22.42 0.14 -2.15 15 21 Cl -0.07 -1.93 28.97 -2.72 -0.08 -2.00 15 22 C -0.05 -1.71 8.43 22.31 0.19 -1.52 15 23 H 0.05 2.69 6.46 -2.39 -0.02 2.67 15 24 H 0.03 1.37 7.54 -2.39 -0.02 1.35 15 25 H 0.03 1.18 8.14 -2.38 -0.02 1.17 15 26 H 0.26 13.81 8.31 -92.71 -0.77 13.03 15 27 H 0.14 4.35 7.91 -2.91 -0.02 4.33 15 28 H 0.24 3.38 8.06 -2.91 -0.02 3.36 15 29 H 0.13 5.05 7.60 -2.91 -0.02 5.03 15 Total: -1.00 -58.47 269.24 3.35 -55.11 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -0.73 Total: 7.70 kcal Atomic # 6 Polarization: -36.34 SS G_CDS: 2.93 Total: -33.41 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -0.80 Total: -71.82 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 17 Polarization: -1.93 SS G_CDS: -0.08 Total: -2.00 kcal Total: -58.47 3.35 -55.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259903071.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.287 kcal (2) G-P(sol) polarization free energy of solvation -58.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds