Wall clock time and date at job start Mon Mar 30 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47474 * 2 1 4 4 C 1.50704 * 109.46960 * 119.99668 * 2 1 3 5 5 H 1.08006 * 119.99390 * 119.99756 * 4 2 1 6 6 C 1.37873 * 120.00270 * 299.99597 * 4 2 1 7 7 N 1.31518 * 119.99808 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00014 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46650 * 90.00433 * 8 6 4 10 10 H 1.48491 * 109.47159 * 210.00128 * 8 6 4 11 11 H 1.48496 * 109.47349 * 330.00593 * 8 6 4 12 12 C 1.50696 * 109.46976 * 239.99321 * 2 1 3 13 13 C 1.36467 * 119.67270 * 119.75503 * 12 2 1 14 14 C 1.39923 * 119.79830 * 179.76063 * 13 12 2 15 15 C 1.45956 * 133.94663 * 180.16419 * 14 13 12 16 16 N 1.30241 * 107.79942 * 180.29338 * 15 14 13 17 17 N 1.39869 * 110.08487 * 359.97438 * 16 15 14 18 18 H 0.97004 * 125.46771 * 179.97438 * 17 16 15 19 19 C 1.37082 * 109.06509 * 0.02562 * 17 16 15 20 20 C 1.39359 * 133.81575 * 180.02562 * 19 17 16 21 21 Cl 1.73600 * 120.14707 * 0.02562 * 20 19 17 22 22 C 1.37720 * 119.71295 * 180.02562 * 20 19 17 23 23 H 1.08995 * 109.47444 * 60.00067 * 1 2 3 24 24 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46879 * 300.00345 * 1 2 3 26 26 H 0.97001 * 119.99750 * 179.97438 * 7 6 4 27 27 H 1.08003 * 120.10206 * 359.92495 * 13 12 2 28 28 H 1.07999 * 126.09726 * 0.29065 * 15 14 13 29 29 H 1.08000 * 119.66956 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.6297 -0.5458 4.4124 10 1 1.3432 -0.9491 5.1121 11 1 2.4859 -2.5661 3.7121 12 6 2.0323 -0.7105 -1.2304 13 6 2.8123 -0.0396 -2.1269 14 6 3.2842 -0.6982 -3.2676 15 6 4.1175 -0.2972 -4.3968 16 7 4.2382 -1.3251 -5.1875 17 7 3.5345 -2.4163 -4.6674 18 1 3.4743 -3.2939 -5.0763 19 6 2.9427 -2.0463 -3.4876 20 6 2.1413 -2.7098 -2.5604 21 17 1.7105 -4.3725 -2.8123 22 6 1.6926 -2.0408 -1.4434 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7083 1.1611 3.4844 27 1 3.0667 0.9959 -1.9551 28 1 4.5558 0.6780 -4.5495 29 1 1.0713 -2.5556 -0.7255 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259903075.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:08 Heat of formation + Delta-G solvation = 63.826326 kcal Electronic energy + Delta-G solvation = -15492.763114 eV Core-core repulsion = 12828.437887 eV Total energy + Delta-G solvation = -2664.325227 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.96744 -37.55019 -36.28332 -33.83815 -31.99074 -30.94166 -29.44885 -27.72847 -25.16918 -22.73675 -22.49288 -21.53072 -19.74788 -17.72536 -16.51494 -15.80968 -15.18076 -14.70488 -14.61771 -14.49065 -13.61158 -13.30114 -12.68638 -12.41688 -12.17354 -11.58248 -11.26132 -11.13385 -10.93407 -10.84339 -10.75719 -10.59536 -10.24613 -10.13683 -9.89359 -9.57168 -9.02863 -8.42266 -8.22748 -7.42436 -6.05946 -4.13221 1.15899 1.88887 2.37505 2.65275 2.84510 3.27975 3.35198 3.38733 4.13496 4.41211 4.79064 4.85731 5.20668 5.26012 5.41367 5.79606 5.92931 6.03711 6.25986 6.54392 6.70814 6.78922 6.92665 7.04558 7.20025 7.29767 7.42786 7.65417 7.71353 7.86641 8.03653 8.32194 8.89208 9.52277 10.99446 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025757 B = 0.006675 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.831017 B = 4193.834140 C = 4688.370315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.076 3.924 3 H 0.039 0.961 4 C -0.511 4.511 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.891 3.109 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.273 1.273 12 C -0.058 4.058 13 C -0.053 4.053 14 C -0.167 4.167 15 C 0.076 3.924 16 N -0.259 5.259 17 N -0.512 5.512 18 H 0.436 0.564 19 C 0.118 3.882 20 C -0.071 4.071 21 Cl -0.088 7.088 22 C -0.033 4.033 23 H 0.010 0.990 24 H 0.028 0.972 25 H 0.087 0.913 26 H 0.261 0.739 27 H 0.130 0.870 28 H 0.196 0.804 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.376 -3.809 -10.536 11.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.058 3.942 3 H 0.058 0.942 4 C -0.549 4.549 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.719 3.281 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 C -0.060 4.060 13 C -0.073 4.073 14 C -0.175 4.175 15 C -0.122 4.122 16 N -0.073 5.073 17 N -0.228 5.228 18 H 0.280 0.720 19 C 0.003 3.997 20 C -0.101 4.101 21 Cl -0.059 7.059 22 C -0.054 4.054 23 H 0.029 0.971 24 H 0.047 0.953 25 H 0.105 0.895 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.213 0.787 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.772 -4.283 -11.521 12.600 hybrid contribution -0.066 -0.880 1.388 1.645 sum 2.705 -5.163 -10.133 11.690 Atomic orbital electron populations 1.21817 0.97539 0.99384 1.00491 1.17870 0.92920 0.95449 0.87954 0.94246 1.21103 1.31402 1.12543 0.89850 0.92413 1.24933 0.94921 0.94951 0.98927 1.69877 1.36439 1.22842 1.23530 0.86597 0.78621 0.80187 0.82676 1.20655 1.21223 1.19835 1.20197 0.95750 0.92894 0.97126 1.20436 0.95932 0.99885 0.91051 1.19830 1.05722 0.92926 0.99045 1.25034 0.97752 0.98211 0.91185 1.76459 1.14283 0.94621 1.21889 1.45791 1.45766 1.12575 1.18671 0.71997 1.18264 0.97690 0.94692 0.89102 1.19780 1.06296 0.85763 0.98272 1.98320 1.92564 1.18299 1.96731 1.21022 0.96660 0.94452 0.93293 0.97088 0.95264 0.89465 0.92874 0.85183 0.78712 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.78 37.16 0.33 -2.71 15 2 C 0.08 1.77 2.46 -92.92 -0.23 1.54 15 3 H 0.04 0.97 7.83 -51.93 -0.41 0.56 15 4 C -0.51 -13.11 8.23 -34.44 -0.28 -13.40 15 5 H 0.06 1.49 7.60 -52.48 -0.40 1.09 15 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 15 7 N -0.89 -24.09 11.32 55.43 0.63 -23.46 15 8 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 15 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 15 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 12 C -0.06 -1.15 4.70 -105.00 -0.49 -1.65 15 13 C -0.05 -0.92 9.66 -39.59 -0.38 -1.31 15 14 C -0.17 -2.75 6.36 -105.21 -0.67 -3.42 15 15 C 0.08 1.04 12.28 -15.14 -0.19 0.86 15 16 N -0.26 -3.80 12.55 31.87 0.40 -3.40 15 17 N -0.51 -7.49 7.37 32.38 0.24 -7.26 15 18 H 0.44 5.30 8.96 -182.77 -1.64 3.67 15 19 C 0.12 1.95 7.13 -84.13 -0.60 1.35 15 20 C -0.07 -1.20 6.34 -39.35 -0.25 -1.45 15 21 Cl -0.09 -1.30 28.97 -51.86 -1.50 -2.80 15 22 C -0.03 -0.63 8.44 -39.51 -0.33 -0.96 15 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 15 24 H 0.03 0.62 7.36 -51.93 -0.38 0.24 15 25 H 0.09 2.18 6.07 -51.93 -0.32 1.86 15 26 H 0.26 6.80 8.31 -40.82 -0.34 6.46 15 27 H 0.13 2.05 7.91 -52.48 -0.41 1.64 15 28 H 0.20 1.86 8.06 -52.49 -0.42 1.44 15 29 H 0.14 2.71 7.54 -52.49 -0.40 2.31 15 LS Contribution 268.53 15.07 4.05 4.05 Total: -1.00 -27.60 268.53 -8.34 -35.94 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -3.93 Total: 0.97 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -3.19 Total: -19.54 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 1.27 Total: -34.12 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.50 Total: -2.80 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.60 -8.34 -35.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259903075.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.762 kcal (2) G-P(sol) polarization free energy of solvation -27.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds