Wall clock time and date at job start Mon Mar 30 2020 06:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47474 * 2 1 4 4 C 1.50704 * 109.46960 * 119.99668 * 2 1 3 5 5 H 1.08006 * 119.99390 * 119.99756 * 4 2 1 6 6 C 1.37873 * 120.00270 * 299.99597 * 4 2 1 7 7 N 1.31518 * 119.99808 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00014 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46650 * 90.00433 * 8 6 4 10 10 H 1.48491 * 109.47159 * 210.00128 * 8 6 4 11 11 H 1.48496 * 109.47349 * 330.00593 * 8 6 4 12 12 C 1.50696 * 109.46976 * 239.99321 * 2 1 3 13 13 C 1.36467 * 119.67270 * 119.75503 * 12 2 1 14 14 C 1.39923 * 119.79830 * 179.76063 * 13 12 2 15 15 C 1.45956 * 133.94663 * 180.16419 * 14 13 12 16 16 N 1.30241 * 107.79942 * 180.29338 * 15 14 13 17 17 N 1.39869 * 110.08487 * 359.97438 * 16 15 14 18 18 H 0.97004 * 125.46771 * 179.97438 * 17 16 15 19 19 C 1.37082 * 109.06509 * 0.02562 * 17 16 15 20 20 C 1.39359 * 133.81575 * 180.02562 * 19 17 16 21 21 Cl 1.73600 * 120.14707 * 0.02562 * 20 19 17 22 22 C 1.37720 * 119.71295 * 180.02562 * 20 19 17 23 23 H 1.08995 * 109.47444 * 60.00067 * 1 2 3 24 24 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46879 * 300.00345 * 1 2 3 26 26 H 0.97001 * 119.99750 * 179.97438 * 7 6 4 27 27 H 1.08003 * 120.10206 * 359.92495 * 13 12 2 28 28 H 1.07999 * 126.09726 * 0.29065 * 15 14 13 29 29 H 1.08000 * 119.66956 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.6297 -0.5458 4.4124 10 1 1.3432 -0.9491 5.1121 11 1 2.4859 -2.5661 3.7121 12 6 2.0323 -0.7105 -1.2304 13 6 2.8123 -0.0396 -2.1269 14 6 3.2842 -0.6982 -3.2676 15 6 4.1175 -0.2972 -4.3968 16 7 4.2382 -1.3251 -5.1875 17 7 3.5345 -2.4163 -4.6674 18 1 3.4743 -3.2939 -5.0763 19 6 2.9427 -2.0463 -3.4876 20 6 2.1413 -2.7098 -2.5604 21 17 1.7105 -4.3725 -2.8123 22 6 1.6926 -2.0408 -1.4434 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7083 1.1611 3.4844 27 1 3.0667 0.9959 -1.9551 28 1 4.5558 0.6780 -4.5495 29 1 1.0713 -2.5556 -0.7255 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259903075.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:08 Heat of formation + Delta-G solvation = 49.010451 kcal Electronic energy + Delta-G solvation = -15493.405579 eV Core-core repulsion = 12828.437887 eV Total energy + Delta-G solvation = -2664.967692 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.20735 -38.95281 -37.58275 -35.58643 -33.31774 -32.62406 -30.75326 -29.21374 -27.13743 -24.07688 -24.03039 -22.71402 -21.31138 -19.02372 -18.27113 -17.35303 -16.70370 -16.32244 -15.93546 -15.72619 -15.04496 -14.59223 -14.40723 -13.86961 -13.71928 -13.31196 -12.94806 -12.81346 -12.52636 -12.32728 -12.11820 -12.07122 -11.96670 -11.77302 -11.29984 -11.13288 -10.87836 -10.41413 -9.57369 -8.76735 -8.04432 -6.17467 -0.14314 0.51508 1.08365 1.44486 1.46975 1.48782 1.55702 1.69740 2.46385 2.78156 3.23833 3.59948 3.71656 3.96242 4.03065 4.44702 4.64416 4.67811 4.81840 5.01838 5.11405 5.29522 5.29878 5.43190 5.54836 5.70094 5.84868 6.05896 6.14141 6.25869 6.41017 6.57436 6.90874 7.50411 8.99228 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025757 B = 0.006675 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.831017 B = 4193.834140 C = 4688.370315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.079 3.921 3 H 0.018 0.982 4 C -0.519 4.519 5 H 0.051 0.949 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.946 3.054 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.271 1.271 12 C -0.083 4.083 13 C -0.045 4.045 14 C -0.178 4.178 15 C 0.091 3.909 16 N -0.266 5.266 17 N -0.507 5.507 18 H 0.446 0.554 19 C 0.114 3.886 20 C -0.070 4.070 21 Cl -0.069 7.069 22 C -0.045 4.045 23 H 0.027 0.973 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.261 0.739 27 H 0.145 0.855 28 H 0.238 0.762 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.420 -4.220 -11.861 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.060 3.940 3 H 0.037 0.963 4 C -0.557 4.557 5 H 0.069 0.931 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.196 1.196 12 C -0.085 4.085 13 C -0.065 4.065 14 C -0.186 4.186 15 C -0.106 4.106 16 N -0.079 5.079 17 N -0.224 5.224 18 H 0.292 0.708 19 C -0.003 4.003 20 C -0.101 4.101 21 Cl -0.040 7.040 22 C -0.067 4.067 23 H 0.046 0.954 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.162 0.838 28 H 0.254 0.746 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.823 -4.721 -12.870 14.231 hybrid contribution -0.358 -0.778 1.687 1.892 sum 3.465 -5.499 -11.183 12.935 Atomic orbital electron populations 1.21664 0.97482 0.99239 0.99914 1.17693 0.93031 0.94363 0.88903 0.96343 1.21384 1.30933 1.12285 0.91143 0.93120 1.25594 0.95284 0.95645 1.01422 1.69991 1.37471 1.23970 1.23912 0.85739 0.78075 0.79234 0.79730 1.20370 1.21055 1.19566 1.19879 0.98062 0.93574 0.96972 1.20520 0.94757 1.00463 0.90805 1.20063 1.06168 0.92956 0.99410 1.25703 0.96211 0.99478 0.89253 1.76494 1.14449 0.94802 1.22151 1.45859 1.45284 1.13242 1.17989 0.70817 1.18382 0.97378 0.94992 0.89535 1.19700 1.05944 0.86673 0.97759 1.98322 1.92424 1.16681 1.96589 1.20864 0.97436 0.94297 0.94057 0.95370 0.95115 0.92144 0.92979 0.83762 0.74582 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.74 8.78 71.98 0.63 -5.11 15 2 C 0.08 3.69 2.46 -12.29 -0.03 3.66 15 3 H 0.02 0.93 7.83 -2.39 -0.02 0.91 15 4 C -0.52 -27.05 8.23 25.60 0.21 -26.84 15 5 H 0.05 2.65 7.60 -2.91 -0.02 2.63 15 6 C 0.02 1.03 5.30 84.65 0.45 1.48 15 7 N -0.91 -50.43 11.32 21.45 0.24 -50.18 15 8 Si 0.95 42.34 29.54 68.60 2.03 44.37 15 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 15 11 H -0.27 -11.90 7.11 99.48 0.71 -11.20 15 12 C -0.08 -3.29 4.70 -20.11 -0.09 -3.39 15 13 C -0.05 -1.53 9.66 22.26 0.22 -1.31 15 14 C -0.18 -5.43 6.36 -20.25 -0.13 -5.55 15 15 C 0.09 2.18 12.28 86.93 1.07 3.24 15 16 N -0.27 -6.95 12.55 -53.07 -0.67 -7.62 15 17 N -0.51 -13.54 7.37 -51.48 -0.38 -13.92 15 18 H 0.45 9.76 8.96 -213.46 -1.91 7.84 15 19 C 0.11 3.54 7.13 39.22 0.28 3.82 15 20 C -0.07 -2.31 6.34 22.42 0.14 -2.16 15 21 Cl -0.07 -1.94 28.97 -2.72 -0.08 -2.02 15 22 C -0.05 -1.70 8.44 22.31 0.19 -1.52 15 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 15 24 H 0.03 1.34 7.36 -2.39 -0.02 1.32 15 25 H 0.06 3.09 6.07 -2.38 -0.01 3.07 15 26 H 0.26 13.79 8.31 -92.71 -0.77 13.02 15 27 H 0.14 4.35 7.91 -2.91 -0.02 4.32 15 28 H 0.24 3.37 8.06 -2.91 -0.02 3.35 15 29 H 0.13 5.08 7.54 -2.91 -0.02 5.06 15 Total: -1.00 -58.35 268.53 3.35 -55.00 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -0.72 Total: 8.04 kcal Atomic # 6 Polarization: -36.60 SS G_CDS: 2.93 Total: -33.67 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -0.80 Total: -71.72 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -0.08 Total: -2.02 kcal Total: -58.35 3.35 -55.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259903075.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.014 kcal (2) G-P(sol) polarization free energy of solvation -58.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds