Wall clock time and date at job start Mon Mar 30 2020 06:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99772 * 2 1 4 4 H 1.48498 * 109.46898 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47126 * 299.99897 * 3 2 1 6 6 H 1.48495 * 109.47123 * 60.00263 * 3 2 1 7 7 C 1.37874 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00231 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47143 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47143 * 180.02562 * 10 9 7 12 12 C 1.35114 * 126.40674 * 85.02305 * 11 10 9 13 13 N 1.33498 * 108.62000 * 179.74156 * 12 11 10 14 14 C 1.32587 * 109.15664 * 0.02562 * 13 12 11 15 15 C 1.40930 * 132.30678 * 180.02562 * 14 13 12 16 16 C 1.36018 * 119.34724 * 179.97438 * 15 14 13 17 17 C 1.40547 * 119.69019 * 359.97438 * 16 15 14 18 18 Cl 1.73595 * 119.86260 * 180.02562 * 17 16 15 19 19 C 1.35045 * 120.27418 * 0.02562 * 17 16 15 20 20 N 1.36539 * 120.59185 * 359.97438 * 19 17 16 21 21 H 0.97000 * 120.00804 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.46883 * 59.99874 * 9 7 2 23 23 H 1.09001 * 109.46997 * 300.00069 * 9 7 2 24 24 H 1.09003 * 109.47205 * 60.00034 * 10 9 7 25 25 H 1.08997 * 109.47137 * 300.00364 * 10 9 7 26 26 H 1.07998 * 125.68890 * 359.73801 * 12 11 10 27 27 H 1.07992 * 120.32498 * 359.97217 * 15 14 13 28 28 H 1.07998 * 120.15093 * 179.97438 * 16 15 14 29 29 H 1.08000 * 119.70576 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 6 1.0095 -5.6143 -1.0849 13 7 0.4094 -6.7358 -0.6796 14 6 0.4954 -6.8227 0.6406 15 6 0.0379 -7.7883 1.5595 16 6 0.2762 -7.6110 2.8869 17 6 0.9737 -6.4713 3.3228 18 17 1.2809 -6.2408 5.0157 19 6 1.4059 -5.5548 2.4301 20 7 1.1729 -5.7213 1.0951 21 1 -0.4851 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8902 23 1 0.6247 -2.5571 0.8897 24 1 2.8720 -3.6043 0.8895 25 1 2.8720 -3.6043 -0.8905 26 1 1.0952 -5.2799 -2.1082 27 1 -0.4967 -8.6603 1.2132 28 1 -0.0689 -8.3425 3.6024 29 1 1.9406 -4.6822 2.7752 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259908429.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:12 Heat of formation + Delta-G solvation = 66.669064 kcal Electronic energy + Delta-G solvation = -15236.854306 eV Core-core repulsion = 12572.652349 eV Total energy + Delta-G solvation = -2664.201957 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.64372 -37.77596 -36.24746 -34.44553 -33.27056 -31.55189 -29.80133 -28.10119 -25.21890 -23.57349 -22.42952 -21.76059 -20.31884 -17.32694 -16.94881 -16.38699 -16.07015 -15.72365 -14.75722 -14.52536 -13.51703 -13.47715 -13.12502 -12.98840 -12.68499 -12.37218 -12.02846 -11.38117 -11.15827 -11.11214 -11.03894 -10.81783 -10.58958 -10.22693 -9.84607 -9.69291 -9.22205 -8.53458 -8.44787 -7.50812 -6.08552 -4.13170 0.70049 1.27633 1.72484 2.91170 3.04781 3.25945 3.33953 3.37228 3.57681 4.29692 4.38598 4.55519 4.66918 5.00173 5.23309 5.27308 5.52945 5.63912 5.72848 5.83748 5.91533 6.27744 6.37740 6.59435 6.69467 6.91733 7.18109 7.54445 7.63572 7.88730 8.04749 8.27070 8.93638 9.52027 11.02291 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.005755 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.528001 B = 4864.157693 C = 5757.117704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.029 3.971 10 C -0.043 4.043 11 C -0.015 4.015 12 C 0.022 3.978 13 N -0.483 5.483 14 C 0.196 3.804 15 C -0.060 4.060 16 C -0.107 4.107 17 C -0.072 4.072 18 Cl -0.046 7.046 19 C 0.089 3.911 20 N -0.359 5.359 21 H 0.261 0.739 22 H 0.023 0.977 23 H 0.013 0.987 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.183 0.817 27 H 0.155 0.845 28 H 0.147 0.853 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 -14.050 6.608 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.082 4.082 11 C -0.128 4.128 12 C -0.127 4.127 13 N -0.203 5.203 14 C -0.046 4.046 15 C -0.080 4.080 16 C -0.131 4.131 17 C -0.102 4.102 18 Cl -0.017 7.017 19 C -0.035 4.035 20 N -0.032 5.032 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.032 0.968 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.200 0.800 27 H 0.173 0.827 28 H 0.165 0.835 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.711 -14.431 6.186 15.794 hybrid contribution 0.733 1.681 0.726 1.972 sum 2.444 -12.750 6.911 14.707 Atomic orbital electron populations 1.69975 1.06113 1.26717 1.50231 1.25019 0.94831 0.99348 0.95069 0.86520 0.80087 0.83643 0.77675 1.19654 1.20896 1.20985 1.21215 0.93091 0.90701 1.51401 0.92364 1.19112 0.93605 0.90340 0.97778 1.20433 0.97783 0.87741 1.02204 1.22083 1.08298 0.98213 0.84202 1.22311 0.99538 0.91777 0.99092 1.70684 1.22509 1.20878 1.06224 1.20905 1.01875 0.90450 0.91415 1.20122 0.99897 0.97826 0.90171 1.20784 0.99664 0.96908 0.95732 1.19921 1.06271 0.97977 0.86075 1.98378 1.94794 1.96927 1.11637 1.21334 1.00594 1.00404 0.81142 1.42647 1.37024 1.18304 1.05258 0.92890 0.95848 0.96850 0.92320 0.89989 0.80024 0.82693 0.83506 0.81107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.63 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 15 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.53 -14.26 9.11 -34.44 -0.31 -14.58 15 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 15 9 C 0.03 0.72 4.96 -27.88 -0.14 0.59 15 10 C -0.04 -0.84 5.59 -27.88 -0.16 -1.00 15 11 C -0.02 -0.29 6.29 -81.47 -0.51 -0.80 15 12 C 0.02 0.40 11.75 -17.94 -0.21 0.19 15 13 N -0.48 -8.84 11.32 -12.78 -0.14 -8.99 15 14 C 0.20 3.29 7.81 -156.04 -1.22 2.07 15 15 C -0.06 -0.76 10.11 -39.36 -0.40 -1.16 15 16 C -0.11 -1.20 9.86 -39.51 -0.39 -1.59 15 17 C -0.07 -0.92 6.28 -39.85 -0.25 -1.17 15 18 Cl -0.05 -0.51 28.94 -51.86 -1.50 -2.01 15 19 C 0.09 1.33 10.57 -16.59 -0.18 1.15 15 20 N -0.36 -6.18 2.95 -58.42 -0.17 -6.36 15 21 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 22 H 0.02 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 15 24 H 0.06 1.09 7.97 -51.93 -0.41 0.67 15 25 H 0.08 1.50 8.14 -51.93 -0.42 1.08 15 26 H 0.18 2.83 8.06 -52.49 -0.42 2.41 15 27 H 0.16 1.53 8.06 -52.49 -0.42 1.10 15 28 H 0.15 1.18 8.06 -52.49 -0.42 0.75 15 29 H 0.17 2.40 7.92 -52.49 -0.42 1.98 15 LS Contribution 275.66 15.07 4.15 4.15 Total: -1.00 -30.92 275.66 -8.71 -39.64 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -2.91 Total: -2.15 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -3.86 Total: -14.73 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.42 Total: -40.97 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -30.92 -8.71 -39.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259908429.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.307 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds