Wall clock time and date at job start Mon Mar 30 2020 06:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 119.99772 * 2 1 4 4 H 1.48498 * 109.46898 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47126 * 299.99897 * 3 2 1 6 6 H 1.48495 * 109.47123 * 60.00263 * 3 2 1 7 7 C 1.37874 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99887 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00231 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47143 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.47143 * 180.02562 * 10 9 7 12 12 C 1.35114 * 126.40674 * 85.02305 * 11 10 9 13 13 N 1.33498 * 108.62000 * 179.74156 * 12 11 10 14 14 C 1.32587 * 109.15664 * 0.02562 * 13 12 11 15 15 C 1.40930 * 132.30678 * 180.02562 * 14 13 12 16 16 C 1.36018 * 119.34724 * 179.97438 * 15 14 13 17 17 C 1.40547 * 119.69019 * 359.97438 * 16 15 14 18 18 Cl 1.73595 * 119.86260 * 180.02562 * 17 16 15 19 19 C 1.35045 * 120.27418 * 0.02562 * 17 16 15 20 20 N 1.36539 * 120.59185 * 359.97438 * 19 17 16 21 21 H 0.97000 * 120.00804 * 359.97438 * 1 2 3 22 22 H 1.08994 * 109.46883 * 59.99874 * 9 7 2 23 23 H 1.09001 * 109.46997 * 300.00069 * 9 7 2 24 24 H 1.09003 * 109.47205 * 60.00034 * 10 9 7 25 25 H 1.08997 * 109.47137 * 300.00364 * 10 9 7 26 26 H 1.07998 * 125.68890 * 359.73801 * 12 11 10 27 27 H 1.07992 * 120.32498 * 359.97217 * 15 14 13 28 28 H 1.07998 * 120.15093 * 179.97438 * 16 15 14 29 29 H 1.08000 * 119.70576 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 6 1.0095 -5.6143 -1.0849 13 7 0.4094 -6.7358 -0.6796 14 6 0.4954 -6.8227 0.6406 15 6 0.0379 -7.7883 1.5595 16 6 0.2762 -7.6110 2.8869 17 6 0.9737 -6.4713 3.3228 18 17 1.2809 -6.2408 5.0157 19 6 1.4059 -5.5548 2.4301 20 7 1.1729 -5.7213 1.0951 21 1 -0.4851 0.8400 0.0004 22 1 0.6240 -2.5567 -0.8902 23 1 0.6247 -2.5571 0.8897 24 1 2.8720 -3.6043 0.8895 25 1 2.8720 -3.6043 -0.8905 26 1 1.0952 -5.2799 -2.1082 27 1 -0.4967 -8.6603 1.2132 28 1 -0.0689 -8.3425 3.6024 29 1 1.9406 -4.6822 2.7752 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259908429.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:12 Heat of formation + Delta-G solvation = 50.112359 kcal Electronic energy + Delta-G solvation = -15237.572258 eV Core-core repulsion = 12572.652349 eV Total energy + Delta-G solvation = -2664.919910 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.89549 -38.87153 -37.29851 -36.15252 -34.77747 -33.28640 -30.98164 -29.65385 -26.95028 -24.79188 -23.81005 -23.32234 -21.77084 -18.81975 -18.25160 -18.03934 -17.13300 -17.05873 -16.47708 -15.93418 -15.00586 -14.81562 -14.64936 -14.30430 -14.02146 -13.83713 -13.38262 -12.99406 -12.89755 -12.52720 -12.33726 -12.11601 -12.04163 -11.93477 -11.51354 -11.34841 -11.10650 -10.59482 -9.74061 -8.79446 -8.21442 -6.34410 -0.39342 0.12213 0.66873 1.40626 1.41405 1.54265 1.69676 1.77157 2.39486 2.40215 3.12029 3.17975 3.46026 3.57741 3.83539 4.12125 4.18209 4.34808 4.52004 4.71398 4.82354 4.88132 4.96326 5.02877 5.34483 5.44813 5.57646 5.62928 5.78669 5.94357 6.16829 6.74177 6.82794 7.35989 8.90011 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.023125 B = 0.005755 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.528001 B = 4864.157693 C = 5757.117704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.038 3.962 10 C -0.024 4.024 11 C -0.048 4.048 12 C 0.017 3.983 13 N -0.513 5.513 14 C 0.191 3.809 15 C -0.067 4.067 16 C -0.085 4.085 17 C -0.059 4.059 18 Cl -0.027 7.027 19 C 0.056 3.944 20 N -0.364 5.364 21 H 0.263 0.737 22 H -0.006 1.006 23 H -0.019 1.019 24 H 0.066 0.934 25 H 0.093 0.907 26 H 0.194 0.806 27 H 0.187 0.813 28 H 0.190 0.810 29 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.869 -15.108 8.014 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.578 4.578 8 H 0.087 0.913 9 C 0.001 3.999 10 C -0.062 4.062 11 C -0.161 4.161 12 C -0.133 4.133 13 N -0.233 5.233 14 C -0.052 4.052 15 C -0.087 4.087 16 C -0.109 4.109 17 C -0.089 4.089 18 Cl 0.002 6.998 19 C -0.067 4.067 20 N -0.037 5.037 21 H 0.072 0.928 22 H 0.013 0.987 23 H -0.001 1.001 24 H 0.085 0.915 25 H 0.111 0.889 26 H 0.211 0.789 27 H 0.205 0.795 28 H 0.207 0.793 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.415 -15.495 7.604 17.428 hybrid contribution 0.466 1.890 0.455 2.000 sum 2.881 -13.604 8.060 16.073 Atomic orbital electron populations 1.70119 1.07989 1.27769 1.51549 1.25985 0.95662 1.03455 0.94613 0.85381 0.79267 0.78662 0.77641 1.18136 1.20537 1.20623 1.21677 0.93804 0.91710 1.50650 0.91315 1.18917 0.93913 0.92331 0.94756 1.20065 0.96525 0.86538 1.03103 1.21802 1.10486 0.98616 0.85180 1.22584 0.99113 0.91861 0.99719 1.70669 1.23979 1.21318 1.07316 1.21659 1.01029 0.90872 0.91673 1.20601 1.00095 0.97954 0.90047 1.21281 0.97265 0.96449 0.95900 1.20197 1.04483 0.97504 0.86677 1.98395 1.94593 1.96886 1.09899 1.21570 1.02585 1.01758 0.80779 1.42706 1.36948 1.18262 1.05752 0.92797 0.98728 1.00067 0.91526 0.88865 0.78872 0.79535 0.79260 0.81198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.29 21.45 0.28 -56.38 15 2 C 0.00 0.04 5.46 84.65 0.46 0.51 15 3 Si 0.97 43.36 29.54 68.60 2.03 45.39 15 4 H -0.26 -10.87 7.11 99.48 0.71 -10.16 15 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 7 C -0.54 -29.75 9.11 25.60 0.23 -29.52 15 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 15 9 C 0.04 1.99 4.96 29.85 0.15 2.14 15 10 C -0.02 -0.96 5.59 29.85 0.17 -0.79 15 11 C -0.05 -1.84 6.29 41.06 0.26 -1.58 15 12 C 0.02 0.62 11.75 83.72 0.98 1.60 15 13 N -0.51 -18.84 11.32 -194.36 -2.20 -21.04 15 14 C 0.19 6.26 7.81 134.10 1.05 7.31 15 15 C -0.07 -1.52 10.11 22.41 0.23 -1.29 15 16 C -0.09 -1.60 9.86 22.32 0.22 -1.38 15 17 C -0.06 -1.35 6.28 22.10 0.14 -1.21 15 18 Cl -0.03 -0.52 28.94 -2.72 -0.08 -0.60 15 19 C 0.06 1.65 10.57 83.23 0.88 2.53 15 20 N -0.36 -12.59 2.95 -338.76 -1.00 -13.59 15 21 H 0.26 14.99 8.31 -92.71 -0.77 14.22 15 22 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 15 23 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 15 24 H 0.07 2.51 7.97 -2.39 -0.02 2.49 15 25 H 0.09 3.46 8.14 -2.39 -0.02 3.44 15 26 H 0.19 6.27 8.06 -2.91 -0.02 6.25 15 27 H 0.19 2.98 8.06 -2.91 -0.02 2.96 15 28 H 0.19 1.97 8.06 -2.91 -0.02 1.95 15 29 H 0.17 4.84 7.92 -2.91 -0.02 4.81 15 Total: -1.00 -68.10 275.66 4.96 -63.14 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 1.16 Total: 4.76 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 4.76 Total: -21.69 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -2.91 Total: -91.00 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.60 kcal Total: -68.10 4.96 -63.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259908429.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.253 kcal (2) G-P(sol) polarization free energy of solvation -68.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds