Wall clock time and date at job start Mon Mar 30 2020 05:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 C 1.50707 * 109.46640 * 119.99870 * 2 1 3 13 13 C 1.38751 * 119.87368 * 59.72663 * 12 2 1 14 14 C 1.37821 * 120.70137 * 179.70370 * 13 12 2 15 15 C 1.38947 * 119.98266 * 0.58165 * 14 13 12 16 16 O 1.34830 * 133.40469 * 179.67120 * 15 14 13 17 17 C 1.34453 * 110.89509 * 180.02562 * 16 15 14 18 18 C 1.33993 * 110.14464 * 0.02562 * 17 16 15 19 19 C 1.40443 * 119.32744 * 359.69909 * 15 14 13 20 20 C 1.37843 * 119.86755 * 240.00120 * 12 2 1 21 21 Cl 1.73601 * 120.21179 * 0.02562 * 20 12 2 22 22 H 1.08998 * 109.46841 * 60.00163 * 1 2 3 23 23 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 25 25 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 26 26 H 1.08005 * 119.64612 * 359.97438 * 13 12 2 27 27 H 1.08000 * 120.00232 * 180.29965 * 14 13 12 28 28 H 1.07994 * 124.93440 * 180.02562 * 17 16 15 29 29 H 1.07997 * 126.90824 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 6 2.0322 -0.7104 1.2306 13 6 1.6907 -2.0372 1.4504 14 6 2.1454 -2.7051 2.5669 15 6 2.9450 -2.0461 3.4926 16 8 3.5215 -2.4213 4.6523 17 6 4.2130 -1.4040 5.1952 18 6 4.1211 -0.3166 4.4175 19 6 3.2861 -0.7015 3.2733 20 6 2.8245 -0.0379 2.1362 21 17 3.2446 1.6243 1.8638 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.9041 -0.5278 -4.4374 26 1 1.0653 -2.5531 0.7368 27 1 1.8766 -3.7392 2.7243 28 1 4.7627 -1.4556 6.1233 29 1 4.5717 0.6484 4.5962 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259909856.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:22 Heat of formation + Delta-G solvation = 2.409634 kcal Electronic energy + Delta-G solvation = -15722.653938 eV Core-core repulsion = 13023.372732 eV Total energy + Delta-G solvation = -2699.281206 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.35662 -39.63439 -37.31695 -36.00162 -33.77390 -33.43471 -30.49177 -29.87037 -27.07755 -24.70094 -23.89871 -22.23927 -21.51602 -18.93471 -18.44673 -17.77395 -17.12296 -17.00071 -16.25046 -15.59691 -15.20442 -14.64501 -14.29841 -14.28886 -14.03185 -13.93356 -13.63796 -12.97299 -12.92464 -12.41753 -12.26795 -12.10944 -12.02895 -11.66894 -11.26688 -11.03307 -11.01522 -10.71104 -9.38029 -9.04931 -8.27455 -6.30482 -0.13746 0.33360 1.20040 1.31132 1.38321 1.45584 1.47727 1.86320 2.33899 2.61764 3.08766 3.54092 3.81147 3.94398 4.12460 4.36526 4.40873 4.50955 4.67286 4.78574 4.85120 4.88044 5.06053 5.13969 5.19242 5.40415 5.45060 5.58446 5.65554 5.77352 6.15700 6.31383 6.74094 7.33438 8.88785 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.032585 B = 0.007490 C = 0.006706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.084462 B = 3737.637204 C = 4174.053088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.034 3.966 3 H 0.042 0.958 4 C -0.503 4.503 5 H 0.038 0.962 6 C 0.019 3.981 7 N -0.946 5.946 8 Si 0.940 3.060 9 H -0.262 1.262 10 H -0.251 1.251 11 H -0.301 1.301 12 C -0.055 4.055 13 C -0.082 4.082 14 C -0.096 4.096 15 C 0.031 3.969 16 O -0.198 6.198 17 C 0.028 3.972 18 C -0.226 4.226 19 C -0.141 4.141 20 C -0.021 4.021 21 Cl -0.070 7.070 22 H 0.035 0.965 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.265 0.735 26 H 0.146 0.854 27 H 0.163 0.837 28 H 0.261 0.739 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 0.485 17.890 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.015 3.985 3 H 0.060 0.940 4 C -0.541 4.541 5 H 0.056 0.944 6 C -0.178 4.178 7 N -0.587 5.587 8 Si 0.767 3.233 9 H -0.188 1.188 10 H -0.175 1.175 11 H -0.229 1.229 12 C -0.056 4.056 13 C -0.101 4.101 14 C -0.114 4.114 15 C -0.016 4.016 16 O -0.099 6.099 17 C -0.036 4.036 18 C -0.245 4.245 19 C -0.143 4.143 20 C -0.047 4.047 21 Cl -0.041 7.041 22 H 0.053 0.947 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.164 0.836 27 H 0.180 0.820 28 H 0.276 0.724 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.676 0.370 17.794 17.811 hybrid contribution -0.154 0.972 -0.975 1.385 sum 0.522 1.342 16.819 16.881 Atomic orbital electron populations 1.22087 0.96377 1.01848 0.99588 1.18334 0.93591 0.96373 0.90152 0.93976 1.21082 1.30896 1.12301 0.89781 0.94354 1.25722 0.97189 0.99511 0.95388 1.70023 1.47644 1.42434 0.98551 0.85980 0.79601 0.80555 0.77140 1.18752 1.17476 1.22917 1.19941 0.95929 0.94929 0.94816 1.20916 0.99814 0.92904 0.96423 1.20222 0.97866 1.01449 0.91866 1.19570 1.00381 0.92973 0.88707 1.84013 1.55668 1.39247 1.31018 1.24869 0.95214 0.83719 0.99837 1.22717 1.05100 1.02328 0.94369 1.19941 1.02938 0.94699 0.96701 1.20226 1.02189 0.86323 0.95986 1.98300 1.92285 1.17311 1.96186 0.94672 0.91854 0.92465 0.92550 0.83623 0.81954 0.72359 0.81009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.84 8.48 71.98 0.61 -5.23 15 2 C 0.03 1.59 1.96 -12.28 -0.02 1.57 15 3 H 0.04 2.02 5.21 -2.39 -0.01 2.01 15 4 C -0.50 -28.12 8.82 25.60 0.23 -27.89 15 5 H 0.04 2.38 7.85 -2.91 -0.02 2.35 15 6 C 0.02 1.10 5.45 84.65 0.46 1.56 15 7 N -0.95 -58.63 13.96 21.45 0.30 -58.33 15 8 Si 0.94 44.79 24.37 68.60 1.67 46.47 15 9 H -0.26 -11.70 6.87 99.48 0.68 -11.01 15 10 H -0.25 -11.30 6.53 99.48 0.65 -10.65 15 11 H -0.30 -14.44 7.11 99.48 0.71 -13.73 15 12 C -0.06 -2.29 4.74 -19.83 -0.09 -2.38 15 13 C -0.08 -3.02 8.68 22.29 0.19 -2.82 15 14 C -0.10 -2.96 10.06 22.34 0.22 -2.74 15 15 C 0.03 0.97 7.41 22.98 0.17 1.14 15 16 O -0.20 -5.13 10.58 -9.19 -0.10 -5.23 15 17 C 0.03 0.53 11.96 66.85 0.80 1.33 15 18 C -0.23 -5.62 11.07 23.54 0.26 -5.36 15 19 C -0.14 -4.73 6.23 -20.20 -0.13 -4.86 15 20 C -0.02 -0.79 6.34 22.49 0.14 -0.65 15 21 Cl -0.07 -2.56 26.96 -2.72 -0.07 -2.64 15 22 H 0.03 1.49 3.27 -2.39 -0.01 1.48 15 23 H 0.06 2.45 7.35 -2.39 -0.02 2.43 15 24 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 25 H 0.27 15.47 8.31 -92.71 -0.77 14.70 15 26 H 0.15 5.23 7.54 -2.91 -0.02 5.21 15 27 H 0.16 3.86 8.06 -2.91 -0.02 3.84 15 28 H 0.26 1.79 8.06 -2.91 -0.02 1.77 15 29 H 0.17 3.55 8.06 -2.91 -0.02 3.53 15 Total: -1.00 -67.84 259.44 5.74 -62.10 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.10 Total: 3.95 kcal Atomic # 6 Polarization: -49.17 SS G_CDS: 2.85 Total: -46.32 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.30 Total: -58.33 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.10 Total: -5.23 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.67 Total: 46.47 kcal Atomic # 17 Polarization: -2.56 SS G_CDS: -0.07 Total: -2.64 kcal Total: -67.84 5.74 -62.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909856.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.510 kcal (2) G-P(sol) polarization free energy of solvation -67.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds