Wall clock time and date at job start Mon Mar 30 2020 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46623 * 2 1 4 4 C 1.50700 * 109.47029 * 119.99630 * 2 1 3 5 5 H 1.08000 * 119.99486 * 120.00210 * 4 2 1 6 6 C 1.37872 * 120.00505 * 300.00114 * 4 2 1 7 7 N 1.31510 * 120.00376 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99714 * 0.02562 * 6 4 2 9 9 H 1.48502 * 109.46993 * 89.99958 * 8 6 4 10 10 H 1.48502 * 109.47049 * 209.99819 * 8 6 4 11 11 H 1.48496 * 109.47143 * 330.00083 * 8 6 4 12 12 C 1.50698 * 109.47265 * 240.00222 * 2 1 3 13 13 C 1.38751 * 119.86845 * 300.24861 * 12 2 1 14 14 C 1.37814 * 120.70447 * 180.26201 * 13 12 2 15 15 C 1.38953 * 119.98265 * 359.48574 * 14 13 12 16 16 O 1.34825 * 133.40916 * 180.28036 * 15 14 13 17 17 C 1.34457 * 110.89745 * 179.97438 * 16 15 14 18 18 C 1.33986 * 110.14237 * 359.97438 * 17 16 15 19 19 C 1.40448 * 119.32279 * 0.25670 * 15 14 13 20 20 C 1.37839 * 119.87199 * 119.99742 * 12 2 1 21 21 Cl 1.73593 * 120.21005 * 359.97407 * 20 12 2 22 22 H 1.09002 * 109.46886 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47171 * 299.99645 * 1 2 3 24 24 H 1.08998 * 109.47475 * 59.99986 * 1 2 3 25 25 H 0.96998 * 120.00406 * 180.02562 * 7 6 4 26 26 H 1.08004 * 119.64763 * 0.02562 * 13 12 2 27 27 H 1.08002 * 120.01338 * 179.76872 * 14 13 12 28 28 H 1.07997 * 124.92974 * 179.97438 * 17 16 15 29 29 H 1.08000 * 126.91301 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 2.1381 -0.8589 3.5566 8 14 0.6247 1.2791 2.6541 9 1 -0.8028 0.8726 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8469 2.1764 1.4920 12 6 2.0324 -0.7103 -1.2305 13 6 1.6913 -2.0372 -1.4500 14 6 2.1455 -2.7051 -2.5666 15 6 2.9453 -2.0462 -3.4924 16 8 3.5221 -2.4214 -4.6518 17 6 4.2137 -1.4042 -5.1947 18 6 4.1215 -0.3168 -4.4173 19 6 3.2863 -0.7015 -3.2731 20 6 2.8247 -0.0379 -2.1360 21 17 3.2447 1.6243 -1.8637 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.9035 -0.5278 4.4376 26 1 1.0663 -2.5533 -0.7362 27 1 1.8762 -3.7390 -2.7246 28 1 4.7637 -1.4560 -6.1227 29 1 4.5721 0.6483 -4.5958 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259909860.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:24 Heat of formation + Delta-G solvation = 20.549374 kcal Electronic energy + Delta-G solvation = -15721.931682 eV Core-core repulsion = 13023.437074 eV Total energy + Delta-G solvation = -2698.494608 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.17901 -38.20938 -35.88459 -34.25806 -32.46010 -31.58589 -29.13955 -28.51031 -25.09788 -23.19790 -22.57632 -21.08169 -19.89736 -17.40595 -16.97559 -16.28192 -15.89575 -15.33126 -14.54219 -14.31287 -13.72041 -13.01426 -12.81380 -12.71020 -12.64223 -12.38965 -12.18219 -11.26059 -11.23045 -10.91255 -10.73539 -10.58134 -10.30605 -9.86493 -9.83721 -9.45020 -9.11355 -8.59105 -8.02951 -7.73511 -6.10346 -4.10418 1.12758 1.72206 2.54580 2.62558 2.98091 3.25697 3.38043 3.39881 4.00449 4.38772 4.64202 5.00722 5.22158 5.24156 5.38908 5.50876 5.75324 5.87356 5.99563 6.28112 6.30862 6.34784 6.50638 6.56894 6.69224 6.78558 6.94903 7.00269 7.37532 7.45977 7.67247 8.45558 8.92248 9.50486 11.02277 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.032586 B = 0.007489 C = 0.006707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.051007 B = 3737.738975 C = 4174.020967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.032 3.968 3 H 0.051 0.949 4 C -0.509 4.509 5 H 0.077 0.923 6 C 0.074 3.926 7 N -0.897 5.897 8 Si 0.883 3.117 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.264 1.264 12 C -0.029 4.029 13 C -0.064 4.064 14 C -0.110 4.110 15 C 0.043 3.957 16 O -0.197 6.197 17 C -0.004 4.004 18 C -0.201 4.201 19 C -0.128 4.128 20 C -0.003 4.003 21 Cl -0.068 7.068 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.031 0.969 25 H 0.265 0.735 26 H 0.149 0.851 27 H 0.131 0.869 28 H 0.204 0.796 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.830 0.286 -15.055 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.013 3.987 3 H 0.069 0.931 4 C -0.546 4.546 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.535 5.535 8 Si 0.713 3.287 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.189 1.189 12 C -0.030 4.030 13 C -0.082 4.082 14 C -0.129 4.129 15 C -0.004 4.004 16 O -0.099 6.099 17 C -0.069 4.069 18 C -0.220 4.220 19 C -0.130 4.130 20 C -0.030 4.030 21 Cl -0.039 7.039 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.166 0.834 27 H 0.149 0.851 28 H 0.221 0.779 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.847 0.172 -14.931 14.956 hybrid contribution -0.345 1.131 0.270 1.213 sum 0.501 1.303 -14.661 14.727 Atomic orbital electron populations 1.22164 0.98073 1.01004 0.98906 1.18489 0.92175 0.97271 0.90717 0.93072 1.20866 1.32339 1.13586 0.87851 0.90504 1.24938 0.95632 0.96485 0.95721 1.69876 1.45378 1.40303 0.97943 0.86906 0.80596 0.84008 0.77144 1.20505 1.22462 1.18868 1.20059 0.94070 0.93829 0.94999 1.20926 0.98661 0.93408 0.95231 1.19990 0.99412 1.00334 0.93162 1.19407 1.00036 0.93084 0.87828 1.83971 1.55695 1.38282 1.31964 1.23800 0.97971 0.85630 0.99523 1.22428 1.04211 1.00447 0.94945 1.19551 1.02780 0.94237 0.96437 1.20126 1.01616 0.86125 0.95098 1.98316 1.92248 1.17231 1.96100 0.92632 0.93783 0.94977 0.92545 0.83383 0.85077 0.77897 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.48 37.16 0.32 -2.73 15 2 C 0.03 0.74 1.96 -92.92 -0.18 0.56 15 3 H 0.05 1.23 5.21 -51.93 -0.27 0.96 15 4 C -0.51 -13.80 8.82 -34.44 -0.30 -14.11 15 5 H 0.08 2.26 7.85 -52.49 -0.41 1.85 15 6 C 0.07 2.09 5.45 -17.82 -0.10 1.99 15 7 N -0.90 -26.90 13.96 55.43 0.77 -26.12 15 8 Si 0.88 21.62 24.37 -169.99 -4.14 17.47 15 9 H -0.28 -6.57 6.87 56.52 0.39 -6.18 15 10 H -0.30 -7.33 7.11 56.52 0.40 -6.93 15 11 H -0.26 -6.23 6.53 56.52 0.37 -5.86 15 12 C -0.03 -0.59 4.74 -104.58 -0.50 -1.09 15 13 C -0.06 -1.18 8.68 -39.55 -0.34 -1.52 15 14 C -0.11 -1.79 10.06 -39.47 -0.40 -2.19 15 15 C 0.04 0.73 7.41 -38.49 -0.29 0.45 15 16 O -0.20 -2.93 10.58 3.84 0.04 -2.88 15 17 C 0.00 -0.05 11.96 29.24 0.35 0.30 15 18 C -0.20 -2.81 11.07 -37.62 -0.42 -3.22 15 19 C -0.13 -2.26 6.23 -105.13 -0.65 -2.91 15 20 C 0.00 -0.06 6.34 -39.25 -0.25 -0.31 15 21 Cl -0.07 -1.26 26.96 -51.86 -1.40 -2.66 15 22 H 0.05 1.09 7.36 -51.93 -0.38 0.71 15 23 H 0.04 0.97 3.27 -51.93 -0.17 0.80 15 24 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 26 H 0.15 2.61 7.54 -52.48 -0.40 2.22 15 27 H 0.13 1.73 8.06 -52.49 -0.42 1.30 15 28 H 0.20 1.38 8.06 -52.49 -0.42 0.96 15 29 H 0.15 1.83 8.06 -52.49 -0.42 1.40 15 LS Contribution 259.44 15.07 3.91 3.91 Total: -1.00 -30.45 259.44 -6.08 -36.53 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -2.50 Total: -1.47 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -2.76 Total: -24.77 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.77 Total: -26.12 kcal Atomic # 8 Polarization: -2.93 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.14 Total: 17.47 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.40 Total: -2.66 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.45 -6.08 -36.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259909860.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.077 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds