Wall clock time and date at job start Mon Mar 30 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38340 * 120.35772 * 2 1 4 4 C 1.37484 * 120.94086 * 180.25673 * 3 2 1 5 5 C 1.40755 * 120.67159 * 359.44428 * 4 3 2 6 6 C 1.39722 * 117.00070 * 0.53664 * 5 4 3 7 7 C 1.36873 * 122.25322 * 359.73223 * 6 5 4 8 8 S 1.77389 * 104.37900 * 179.77112 * 6 5 4 9 9 O 1.42102 * 107.67686 * 111.89586 * 8 6 5 10 10 O 1.42104 * 107.67625 * 248.06175 * 8 6 5 11 11 C 1.78027 * 98.97398 * 359.97438 * 8 6 5 12 12 C 1.35841 * 103.77929 * 0.02562 * 11 8 6 13 13 C 1.40935 * 120.90925 * 179.97438 * 12 11 8 14 14 H 1.08000 * 119.99505 * 203.76786 * 13 12 11 15 15 C 1.40020 * 120.00151 * 23.76954 * 13 12 11 16 16 N 1.30786 * 120.00355 * 11.59669 * 15 13 12 17 17 Si 1.86800 * 119.99655 * 191.59621 * 15 13 12 18 18 H 1.48493 * 109.47355 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47145 * 120.00232 * 17 15 13 20 20 H 1.48505 * 109.46996 * 239.99693 * 17 15 13 21 21 H 1.08996 * 109.46790 * 90.00092 * 1 2 3 22 22 H 1.08998 * 109.46792 * 210.00179 * 1 2 3 23 23 H 1.09005 * 109.47060 * 329.99943 * 1 2 3 24 24 H 1.08000 * 119.53089 * 359.97438 * 3 2 1 25 25 H 1.07996 * 119.66683 * 179.71829 * 4 3 2 26 26 H 1.07998 * 120.07429 * 180.02562 * 7 6 5 27 27 H 1.07992 * 128.11034 * 179.97438 * 11 8 6 28 28 H 0.96997 * 120.00550 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2062 1.1937 0.0000 4 6 3.5810 1.2077 -0.0053 5 6 4.3113 0.0045 0.0009 6 6 3.5763 -1.1837 0.0009 7 6 2.2076 -1.1959 0.0005 8 16 4.8058 -2.4624 0.0025 9 8 4.7399 -3.1228 1.2590 10 8 4.7413 -3.1246 -1.2532 11 6 6.2658 -1.4437 0.0025 12 6 5.7762 -0.1766 0.0018 13 6 6.6432 0.9345 0.0021 14 1 6.3002 1.8869 0.3786 15 6 7.9492 0.8037 -0.4857 16 7 8.2963 -0.2709 -1.1455 17 14 9.1957 2.1641 -0.1942 18 1 8.5574 3.2645 0.5718 19 1 10.3450 1.6255 0.5765 20 1 9.6755 2.6840 -1.4999 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5139 24 1 1.6644 2.1280 -0.0004 25 1 4.1059 2.1515 -0.0098 26 1 1.6747 -2.1353 0.0009 27 1 7.2986 -1.7592 0.0036 28 1 9.2008 -0.3614 -1.4837 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259916668.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:06 Heat of formation + Delta-G solvation = -58.020372 kcal Electronic energy + Delta-G solvation = -15779.435387 eV Core-core repulsion = 13079.577446 eV Total energy + Delta-G solvation = -2699.857941 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.56483 -37.84659 -37.30993 -36.55299 -34.79125 -32.17553 -31.82090 -28.30558 -27.26613 -24.17816 -23.01377 -21.70770 -19.71485 -18.91946 -17.88591 -17.38013 -16.63462 -16.44105 -16.29835 -15.52333 -15.03336 -14.79190 -14.68982 -14.00938 -13.61439 -13.36371 -13.26869 -13.07996 -13.00989 -12.89956 -12.86879 -12.69149 -12.29518 -12.04748 -11.56275 -11.40275 -10.83914 -10.64400 -10.28966 -9.15656 -8.81642 -6.91831 -0.39679 -0.23564 0.19852 1.19027 1.36234 1.54412 1.70444 2.10307 2.50757 2.56822 2.82757 3.10556 3.69816 3.79065 3.94038 4.22356 4.23286 4.33268 4.56774 4.80776 4.90322 4.94416 4.95435 5.09159 5.23655 5.25993 5.46209 5.56180 5.91560 5.99917 6.12347 6.46620 6.72942 8.10665 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.023893 B = 0.008957 C = 0.006889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.587456 B = 3125.356565 C = 4063.326250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.102 4.102 3 C -0.075 4.075 4 C -0.107 4.107 5 C -0.042 4.042 6 C -0.642 4.642 7 C -0.025 4.025 8 S 2.535 3.465 9 O -1.004 7.004 10 O -1.005 7.005 11 C -0.850 4.850 12 C 0.090 3.910 13 C -0.419 4.419 14 H 0.106 0.894 15 C 0.018 3.982 16 N -0.778 5.778 17 Si 1.000 3.000 18 H -0.242 1.242 19 H -0.266 1.266 20 H -0.261 1.261 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.173 0.827 25 H 0.145 0.855 26 H 0.147 0.853 27 H 0.157 0.843 28 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.507 7.916 1.296 12.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.104 4.104 3 C -0.092 4.092 4 C -0.125 4.125 5 C -0.043 4.043 6 C -0.732 4.732 7 C -0.044 4.044 8 S 2.727 3.273 9 O -1.001 7.001 10 O -1.002 7.002 11 C -0.971 4.971 12 C 0.084 3.916 13 C -0.446 4.446 14 H 0.124 0.876 15 C -0.202 4.202 16 N -0.400 5.400 17 Si 0.818 3.182 18 H -0.164 1.164 19 H -0.191 1.191 20 H -0.185 1.185 21 H 0.105 0.895 22 H 0.096 0.904 23 H 0.110 0.890 24 H 0.191 0.809 25 H 0.163 0.837 26 H 0.165 0.835 27 H 0.175 0.825 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.494 6.759 1.153 11.711 hybrid contribution 1.264 0.793 -0.141 1.499 sum -8.230 7.552 1.013 11.216 Atomic orbital electron populations 1.20852 0.86914 1.04618 1.03836 1.20673 0.98537 0.92016 0.99138 1.21473 0.92735 0.99617 0.95424 1.21491 0.94842 0.96883 0.99322 1.20280 0.92661 0.94852 0.96513 1.30352 1.08464 1.17024 1.17313 1.20300 0.89784 1.00286 0.94017 1.02996 0.77472 0.74124 0.72746 1.93409 1.88079 1.74930 1.43678 1.93415 1.88059 1.74795 1.43955 1.31091 1.12445 1.06025 1.47571 1.17970 0.88802 0.95765 0.89068 1.20205 0.96183 0.97195 1.31011 0.87573 1.27250 1.01237 0.99814 0.91887 1.69946 1.21007 1.27907 1.21147 0.84885 0.76539 0.77164 0.79590 1.16434 1.19109 1.18496 0.89530 0.90388 0.88972 0.80933 0.83698 0.83543 0.82544 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 10.04 71.24 0.71 -1.06 15 2 C -0.10 -2.81 5.90 -19.75 -0.12 -2.93 15 3 C -0.08 -2.04 9.64 22.12 0.21 -1.82 15 4 C -0.11 -3.79 9.71 22.71 0.22 -3.57 15 5 C -0.04 -1.90 5.99 -19.83 -0.12 -2.02 15 6 C -0.64 -28.66 6.48 22.31 0.14 -28.52 15 7 C -0.02 -0.88 9.69 22.04 0.21 -0.67 15 8 S 2.53 130.52 5.99 -56.49 -0.34 130.18 15 9 O -1.00 -54.34 18.01 -128.19 -2.31 -56.65 15 10 O -1.01 -55.90 18.01 -128.19 -2.31 -58.20 15 11 C -0.85 -47.84 9.93 67.26 0.67 -47.17 15 12 C 0.09 4.75 5.62 -20.70 -0.12 4.63 15 13 C -0.42 -20.78 8.85 23.36 0.21 -20.58 15 14 H 0.11 4.62 7.33 -2.91 -0.02 4.60 15 15 C 0.02 0.88 5.32 85.28 0.45 1.33 15 16 N -0.78 -40.28 10.77 21.84 0.24 -40.04 15 17 Si 1.00 34.69 29.58 68.60 2.03 36.72 15 18 H -0.24 -7.73 7.11 99.48 0.71 -7.02 15 19 H -0.27 -9.15 7.11 99.48 0.71 -8.45 15 20 H -0.26 -8.60 7.11 99.48 0.71 -7.89 15 21 H 0.09 1.25 8.14 -2.39 -0.02 1.23 15 22 H 0.08 1.18 8.09 -2.39 -0.02 1.16 15 23 H 0.09 1.12 8.09 -2.38 -0.02 1.10 15 24 H 0.17 2.98 8.06 -2.91 -0.02 2.96 15 25 H 0.15 4.53 7.49 -2.91 -0.02 4.51 15 26 H 0.15 4.32 8.06 -2.91 -0.02 4.30 15 27 H 0.16 9.32 6.44 -2.91 -0.02 9.30 15 28 H 0.30 13.59 8.30 -92.71 -0.77 12.82 15 Total: -1.00 -72.74 260.83 0.98 -71.76 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 1.18 Total: 18.61 kcal Atomic # 6 Polarization: -104.86 SS G_CDS: 2.48 Total: -102.37 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.24 Total: -40.04 kcal Atomic # 8 Polarization: -110.24 SS G_CDS: -4.62 Total: -114.86 kcal Atomic # 14 Polarization: 34.69 SS G_CDS: 2.03 Total: 36.72 kcal Atomic # 16 Polarization: 130.52 SS G_CDS: -0.34 Total: 130.18 kcal Total: -72.74 0.98 -71.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259916668.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.740 kcal (2) G-P(sol) polarization free energy of solvation -72.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds