Wall clock time and date at job start Mon Mar 30 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 C 1.40843 * 120.10226 * 269.72303 * 11 10 9 13 13 C 1.34652 * 120.62772 * 179.76920 * 12 11 10 14 14 N 1.37138 * 120.54440 * 0.48353 * 13 12 11 15 15 C 1.34977 * 133.13229 * 179.76835 * 14 13 12 16 16 N 1.30966 * 109.38952 * 180.02562 * 15 14 13 17 17 C 1.33410 * 109.88469 * 0.02562 * 16 15 14 18 18 Cl 1.73598 * 126.27971 * 179.97438 * 17 16 15 19 19 C 1.38066 * 107.44417 * 359.97438 * 17 16 15 20 20 C 1.35881 * 120.10254 * 89.99471 * 11 10 9 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 25 25 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 26 26 H 1.08002 * 119.68596 * 359.97438 * 12 11 10 27 27 H 1.07998 * 119.72455 * 180.26241 * 13 12 11 28 28 H 1.07997 * 125.30748 * 0.02562 * 15 14 13 29 29 H 1.07998 * 120.41524 * 359.95751 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4916 -4.9672 -0.0157 12 6 1.1438 -5.5870 1.2003 13 6 0.4666 -6.7508 1.2080 14 7 0.1119 -7.3586 0.0309 15 6 -0.5482 -8.5005 -0.2557 16 7 -0.6321 -8.6397 -1.5553 17 6 -0.0385 -7.6100 -2.1612 18 17 0.0985 -7.3663 -3.8746 19 6 0.4468 -6.7736 -1.1758 20 6 1.1505 -5.5525 -1.1936 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.8718 -3.6005 -0.9002 25 1 2.8717 -3.6084 0.8798 26 1 1.4200 -5.1227 2.1355 27 1 0.2037 -7.2112 2.1489 28 1 -0.9452 -9.1917 0.4729 29 1 1.4153 -5.0879 -2.1319 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259927934.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:12 Heat of formation + Delta-G solvation = 64.052891 kcal Electronic energy + Delta-G solvation = -15079.630342 eV Core-core repulsion = 12415.314939 eV Total energy + Delta-G solvation = -2664.315403 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.73937 -37.83458 -36.44274 -34.44182 -32.90452 -31.21111 -30.30232 -27.67886 -25.21713 -23.54582 -22.33761 -21.74091 -20.28946 -17.98044 -16.67439 -16.25493 -15.91997 -15.53476 -14.75125 -14.53660 -14.23886 -13.93486 -12.85454 -12.75705 -12.47174 -12.02404 -11.70107 -11.52991 -11.26461 -11.00668 -10.97322 -10.64257 -10.27040 -10.17594 -9.97114 -9.57814 -9.22496 -9.09804 -8.43457 -7.27836 -6.07720 -4.11503 0.91551 1.29727 1.96738 2.75932 2.92584 3.26389 3.34435 3.37631 3.52459 4.39318 4.43958 4.66582 4.80419 4.90105 5.05216 5.28330 5.29522 5.69268 5.86319 6.09374 6.14674 6.18811 6.45754 6.60007 6.74056 6.90055 7.14001 7.56546 7.67040 7.69266 7.90398 8.29840 8.95399 9.53406 11.03181 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.030605 B = 0.004905 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.657590 B = 5707.423297 C = 6273.435247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.029 3.971 10 C -0.078 4.078 11 C -0.050 4.050 12 C -0.107 4.107 13 C 0.035 3.965 14 N -0.361 5.361 15 C 0.138 3.862 16 N -0.445 5.445 17 C 0.030 3.970 18 Cl -0.008 7.008 19 C 0.047 3.953 20 C -0.093 4.093 21 H 0.261 0.739 22 H 0.018 0.982 23 H 0.019 0.981 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.153 0.847 27 H 0.168 0.832 28 H 0.215 0.785 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.219 -14.577 1.528 14.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.116 4.116 11 C -0.053 4.053 12 C -0.128 4.128 13 C -0.085 4.085 14 N -0.033 5.033 15 C -0.136 4.136 16 N -0.160 5.160 17 C -0.131 4.131 18 Cl 0.020 6.980 19 C -0.065 4.065 20 C -0.113 4.113 21 H 0.071 0.929 22 H 0.036 0.964 23 H 0.038 0.962 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.170 0.830 27 H 0.185 0.815 28 H 0.232 0.768 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.625 -15.226 1.077 15.277 hybrid contribution 0.607 1.569 0.315 1.711 sum 1.232 -13.657 1.392 13.783 Atomic orbital electron populations 1.69977 1.06085 1.26659 1.50451 1.25027 0.94846 0.99335 0.95164 0.86530 0.80102 0.83691 0.77647 1.19673 1.20948 1.21000 1.21249 0.93111 0.90788 1.51092 0.92419 1.19100 0.93602 0.90392 0.97702 1.20876 0.98367 0.90260 1.02054 1.20362 0.96560 0.96886 0.91481 1.21010 0.98027 0.93704 1.00073 1.21615 1.02479 0.96466 0.87902 1.42795 1.36618 1.17533 1.06370 1.24587 1.05360 0.90743 0.92932 1.69559 1.18685 1.23483 1.04309 1.20462 1.10067 0.95976 0.86579 1.98338 1.96984 1.95862 1.06783 1.19074 1.05410 0.97218 0.84814 1.20398 0.98934 0.91936 1.00011 0.92937 0.96401 0.96233 0.91518 0.91608 0.82972 0.81508 0.76846 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.45 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 15 7 C -0.52 -14.13 9.11 -34.44 -0.31 -14.44 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.03 0.71 4.96 -27.88 -0.14 0.57 15 10 C -0.08 -1.46 5.29 -27.89 -0.15 -1.60 15 11 C -0.05 -0.81 5.14 -104.48 -0.54 -1.34 15 12 C -0.11 -1.43 9.66 -39.87 -0.38 -1.81 15 13 C 0.03 0.40 10.97 -16.45 -0.18 0.22 15 14 N -0.36 -4.98 2.95 -62.38 -0.18 -5.16 15 15 C 0.14 1.76 12.75 -90.05 -1.15 0.61 15 16 N -0.44 -7.00 11.20 -11.11 -0.12 -7.12 15 17 C 0.03 0.48 7.84 -16.93 -0.13 0.35 15 18 Cl -0.01 -0.11 29.32 -51.86 -1.52 -1.64 15 19 C 0.05 0.75 6.80 -84.02 -0.57 0.18 15 20 C -0.09 -1.52 9.75 -39.40 -0.38 -1.91 15 21 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 15 23 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 24 H 0.07 1.21 8.08 -51.93 -0.42 0.79 15 25 H 0.07 1.15 8.09 -51.93 -0.42 0.73 15 26 H 0.15 1.70 8.06 -52.49 -0.42 1.28 15 27 H 0.17 1.18 8.06 -52.49 -0.42 0.76 15 28 H 0.22 1.68 8.06 -52.49 -0.42 1.26 15 29 H 0.15 2.33 8.06 -52.49 -0.42 1.90 15 LS Contribution 276.07 15.07 4.16 4.16 Total: -1.00 -31.47 276.07 -8.91 -40.37 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: -2.92 Total: -3.49 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -4.04 Total: -17.67 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.43 Total: -37.73 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.52 Total: -1.64 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.47 -8.91 -40.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259927934.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.425 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds