Wall clock time and date at job start Mon Mar 30 2020 06:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.50697 * 109.47491 * 179.97438 * 10 9 7 12 12 C 1.40843 * 120.10226 * 269.72303 * 11 10 9 13 13 C 1.34652 * 120.62772 * 179.76920 * 12 11 10 14 14 N 1.37138 * 120.54440 * 0.48353 * 13 12 11 15 15 C 1.34977 * 133.13229 * 179.76835 * 14 13 12 16 16 N 1.30966 * 109.38952 * 180.02562 * 15 14 13 17 17 C 1.33410 * 109.88469 * 0.02562 * 16 15 14 18 18 Cl 1.73598 * 126.27971 * 179.97438 * 17 16 15 19 19 C 1.38066 * 107.44417 * 359.97438 * 17 16 15 20 20 C 1.35881 * 120.10254 * 89.99471 * 11 10 9 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 25 25 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 26 26 H 1.08002 * 119.68596 * 359.97438 * 12 11 10 27 27 H 1.07998 * 119.72455 * 180.26241 * 13 12 11 28 28 H 1.07997 * 125.30748 * 0.02562 * 15 14 13 29 29 H 1.07998 * 120.41524 * 359.95751 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4916 -4.9672 -0.0157 12 6 1.1438 -5.5870 1.2003 13 6 0.4666 -6.7508 1.2080 14 7 0.1119 -7.3586 0.0309 15 6 -0.5482 -8.5005 -0.2557 16 7 -0.6321 -8.6397 -1.5553 17 6 -0.0385 -7.6100 -2.1612 18 17 0.0985 -7.3663 -3.8746 19 6 0.4468 -6.7736 -1.1758 20 6 1.1505 -5.5525 -1.1936 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.8718 -3.6005 -0.9002 25 1 2.8717 -3.6084 0.8798 26 1 1.4200 -5.1227 2.1355 27 1 0.2037 -7.2112 2.1489 28 1 -0.9452 -9.1917 0.4729 29 1 1.4153 -5.0879 -2.1319 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259927934.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:11 Heat of formation + Delta-G solvation = 47.688589 kcal Electronic energy + Delta-G solvation = -15080.339951 eV Core-core repulsion = 12415.314939 eV Total energy + Delta-G solvation = -2665.025012 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.81879 -38.99767 -37.60876 -35.96864 -34.59383 -32.60212 -31.62493 -29.06078 -26.88064 -24.70905 -23.78206 -22.91122 -21.75821 -19.03078 -18.57074 -17.54566 -17.02631 -16.68758 -16.50071 -15.88007 -15.32279 -15.04188 -14.49611 -14.46244 -13.75880 -13.56895 -13.16890 -12.94264 -12.77240 -12.41080 -12.33844 -12.32861 -11.79293 -11.69714 -11.35829 -11.22363 -11.05478 -10.56042 -10.27635 -8.41543 -8.18888 -6.30873 -0.18063 0.19921 0.83983 1.41071 1.42361 1.54788 1.74815 1.85156 2.36357 2.43943 3.14351 3.45329 3.70143 3.74110 3.85699 3.98741 4.20708 4.50824 4.74816 4.82248 4.84546 4.97407 5.10704 5.14127 5.40139 5.50486 5.55491 5.77828 5.84556 6.16776 6.22595 6.60732 6.86708 7.38923 8.91944 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.030605 B = 0.004905 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.657590 B = 5707.423297 C = 6273.435247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.259 1.259 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.036 3.964 10 C -0.065 4.065 11 C -0.057 4.057 12 C -0.132 4.132 13 C 0.062 3.938 14 N -0.369 5.369 15 C 0.166 3.834 16 N -0.476 5.476 17 C 0.008 3.992 18 Cl -0.010 7.010 19 C 0.026 3.974 20 C -0.114 4.114 21 H 0.263 0.737 22 H -0.002 1.002 23 H -0.015 1.015 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.174 0.826 27 H 0.224 0.776 28 H 0.267 0.733 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.686 -15.675 3.434 16.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.083 0.917 9 C -0.001 4.001 10 C -0.102 4.102 11 C -0.061 4.061 12 C -0.152 4.152 13 C -0.056 4.056 14 N -0.041 5.041 15 C -0.110 4.110 16 N -0.192 5.192 17 C -0.151 4.151 18 Cl 0.018 6.982 19 C -0.086 4.086 20 C -0.133 4.133 21 H 0.071 0.929 22 H 0.016 0.984 23 H 0.004 0.996 24 H 0.083 0.917 25 H 0.099 0.901 26 H 0.191 0.809 27 H 0.240 0.760 28 H 0.282 0.718 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.116 -16.325 2.968 16.630 hybrid contribution 0.401 1.801 -0.250 1.862 sum 1.517 -14.523 2.718 14.853 Atomic orbital electron populations 1.70111 1.07841 1.27654 1.51766 1.25960 0.95686 1.03324 0.94816 0.85429 0.79266 0.78927 0.77616 1.18302 1.20836 1.20407 1.21734 0.93739 0.92053 1.50297 0.91665 1.18927 0.94006 0.92212 0.95004 1.20590 0.97264 0.89655 1.02684 1.20242 0.96787 0.96037 0.93001 1.21220 0.99589 0.94909 0.99522 1.22420 0.99257 0.95146 0.88772 1.43082 1.36853 1.17869 1.06310 1.25684 1.02366 0.90055 0.92856 1.69569 1.19849 1.23807 1.05957 1.20675 1.10924 0.96668 0.86837 1.98323 1.97016 1.95918 1.06958 1.19046 1.06115 0.97325 0.86080 1.20336 1.00257 0.92849 0.99862 0.92861 0.98403 0.99619 0.91705 0.90112 0.80851 0.76004 0.71759 0.84564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.29 21.45 0.28 -55.66 15 2 C 0.00 0.00 5.46 84.66 0.46 0.46 15 3 Si 0.96 43.19 29.54 68.60 2.03 45.22 15 4 H -0.26 -10.98 7.11 99.48 0.71 -10.27 15 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 15 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 7 C -0.54 -29.47 9.11 25.60 0.23 -29.24 15 8 H 0.07 3.37 7.74 -2.91 -0.02 3.35 15 9 C 0.04 1.79 4.96 29.85 0.15 1.94 15 10 C -0.06 -2.43 5.29 29.85 0.16 -2.27 15 11 C -0.06 -1.86 5.14 -19.78 -0.10 -1.96 15 12 C -0.13 -3.22 9.66 22.08 0.21 -3.00 15 13 C 0.06 1.19 10.97 83.04 0.91 2.10 15 14 N -0.37 -9.10 2.95 -351.26 -1.04 -10.14 15 15 C 0.17 3.60 12.75 180.15 2.30 5.90 15 16 N -0.48 -14.18 11.20 -189.05 -2.12 -16.29 15 17 C 0.01 0.26 7.84 84.41 0.66 0.92 15 18 Cl -0.01 -0.31 29.32 -2.72 -0.08 -0.39 15 19 C 0.03 0.83 6.80 38.76 0.26 1.09 15 20 C -0.11 -3.80 9.75 22.39 0.22 -3.59 15 21 H 0.26 14.81 8.31 -92.70 -0.77 14.04 15 22 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 15 23 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 15 24 H 0.06 2.41 8.08 -2.38 -0.02 2.39 15 25 H 0.08 2.75 8.09 -2.39 -0.02 2.74 15 26 H 0.17 3.39 8.06 -2.91 -0.02 3.37 15 27 H 0.22 1.68 8.06 -2.91 -0.02 1.66 15 28 H 0.27 2.59 8.06 -2.91 -0.02 2.57 15 29 H 0.14 4.64 8.06 -2.91 -0.02 4.62 15 Total: -1.00 -70.45 276.07 5.70 -64.75 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: 1.16 Total: 0.17 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: 5.46 Total: -27.66 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -2.87 Total: -82.09 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.39 kcal Total: -70.45 5.70 -64.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259927934.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.441 kcal (2) G-P(sol) polarization free energy of solvation -70.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds