Wall clock time and date at job start Mon Mar 30 2020 05:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47119 * 2 1 4 4 C 1.50697 * 109.46744 * 240.00266 * 2 1 3 5 5 H 1.08001 * 120.00559 * 239.99767 * 4 2 1 6 6 C 1.37882 * 120.00010 * 60.00100 * 4 2 1 7 7 N 1.31509 * 120.00096 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00232 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46891 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47055 * 119.99494 * 8 6 4 11 11 H 1.48494 * 109.46965 * 240.00177 * 8 6 4 12 12 C 1.50700 * 109.47353 * 120.00683 * 2 1 3 13 13 C 1.33989 * 126.91116 * 59.97208 * 12 2 1 14 14 O 1.34458 * 110.14348 * 180.23097 * 13 12 2 15 15 C 1.34826 * 110.89461 * 359.60711 * 14 13 12 16 16 C 1.38950 * 133.40538 * 180.10761 * 15 14 13 17 17 C 1.37818 * 119.98622 * 180.29704 * 16 15 14 18 18 C 1.38748 * 120.69887 * 0.02562 * 17 16 15 19 19 C 1.37848 * 120.26317 * 359.97438 * 18 17 16 20 20 Cl 1.73596 * 120.20890 * 180.02562 * 19 18 17 21 21 C 1.39517 * 119.57559 * 0.02562 * 19 18 17 22 22 H 1.09005 * 109.46656 * 299.99463 * 1 2 3 23 23 H 1.08993 * 109.47623 * 59.99119 * 1 2 3 24 24 H 1.08996 * 109.47119 * 179.97438 * 1 2 3 25 25 H 0.96996 * 120.00568 * 179.97438 * 7 6 4 26 26 H 1.08002 * 124.92397 * 359.95980 * 13 12 2 27 27 H 1.07997 * 120.00661 * 0.27523 * 16 15 14 28 28 H 1.07997 * 119.64858 * 180.02562 * 17 16 15 29 29 H 1.08002 * 119.86804 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3222 -1.1193 -4.0081 9 1 3.1471 -2.2862 -3.6040 10 1 1.1675 -1.5863 -4.8166 11 1 3.1470 -0.1855 -4.8161 12 6 2.0324 -0.7105 1.2304 13 6 1.7952 -1.9826 1.5782 14 8 2.4033 -2.2649 2.7438 15 6 3.0742 -1.1917 3.2085 16 6 3.8478 -0.9660 4.3404 17 6 4.4153 0.2722 4.5512 18 6 4.2232 1.3033 3.6429 19 6 3.4594 1.1008 2.5134 20 17 3.2205 2.3918 1.3776 21 6 2.8796 -0.1481 2.2889 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8898 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7086 1.1615 -3.4843 26 1 1.1983 -2.6786 1.0076 27 1 4.0040 -1.7604 5.0551 28 1 5.0159 0.4415 5.4326 29 1 4.6739 2.2684 3.8216 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259936501.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:33 Heat of formation + Delta-G solvation = -3.733076 kcal Electronic energy + Delta-G solvation = -15782.418222 eV Core-core repulsion = 13082.870648 eV Total energy + Delta-G solvation = -2699.547574 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.31355 -38.93327 -37.28922 -36.70235 -33.91396 -31.66329 -31.15153 -29.45177 -27.18729 -24.42191 -23.79249 -23.28360 -20.65693 -18.55324 -18.18716 -17.57247 -16.98084 -16.79795 -16.44587 -15.51263 -15.13558 -14.71900 -14.51340 -14.06972 -13.64404 -13.48795 -13.06554 -12.88573 -12.85467 -12.49474 -12.26037 -12.21603 -12.14856 -11.69957 -11.50903 -10.94910 -10.46915 -10.35813 -9.60748 -8.88536 -8.06818 -6.19676 -0.12620 0.30983 1.22947 1.39687 1.41865 1.51790 1.59517 1.93417 2.44551 2.64266 3.20985 3.64553 3.82874 4.01552 4.21335 4.42058 4.51269 4.73553 4.75155 4.94357 5.09486 5.18823 5.22434 5.29689 5.30301 5.56459 5.60185 5.67477 6.00369 6.09189 6.26476 6.39767 6.88416 7.47066 8.97746 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.025694 B = 0.007997 C = 0.006969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.490578 B = 3500.669566 C = 4016.996439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.088 3.912 3 H 0.038 0.962 4 C -0.518 4.518 5 H 0.048 0.952 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.950 3.050 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.284 1.284 12 C -0.148 4.148 13 C -0.015 4.015 14 O -0.199 6.199 15 C 0.039 3.961 16 C -0.103 4.103 17 C -0.074 4.074 18 C -0.130 4.130 19 C -0.013 4.013 20 Cl -0.072 7.072 21 C -0.155 4.155 22 H 0.017 0.983 23 H 0.061 0.939 24 H 0.033 0.967 25 H 0.260 0.740 26 H 0.221 0.779 27 H 0.168 0.832 28 H 0.191 0.809 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.846 -1.417 13.953 15.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.069 3.931 3 H 0.056 0.944 4 C -0.556 4.556 5 H 0.066 0.934 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.777 3.223 9 H -0.194 1.194 10 H -0.204 1.204 11 H -0.210 1.210 12 C -0.150 4.150 13 C -0.079 4.079 14 O -0.101 6.101 15 C -0.009 4.009 16 C -0.121 4.121 17 C -0.092 4.092 18 C -0.148 4.148 19 C -0.040 4.040 20 Cl -0.043 7.043 21 C -0.156 4.156 22 H 0.036 0.964 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.238 0.762 27 H 0.186 0.814 28 H 0.208 0.792 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.731 -1.440 13.846 15.054 hybrid contribution -0.134 0.001 -1.671 1.677 sum 5.597 -1.440 12.175 13.477 Atomic orbital electron populations 1.21645 0.97677 0.99198 0.99411 1.17415 0.92450 0.95945 0.87272 0.94355 1.21408 1.30881 1.12155 0.91203 0.93395 1.25634 0.95317 0.95678 1.01487 1.70013 1.37637 1.23996 1.23787 0.85619 0.78211 0.78696 0.79823 1.19374 1.20355 1.20978 1.21889 1.00353 0.95156 0.97578 1.23902 1.00612 0.97428 0.85937 1.83955 1.55557 1.35856 1.34706 1.20093 0.98648 0.84850 0.97299 1.20476 0.97336 1.00038 0.94281 1.21351 0.98344 0.89768 0.99749 1.21343 0.98956 1.02343 0.92203 1.20714 1.01343 0.88034 0.93861 1.98377 1.95786 1.48969 1.61124 1.20068 1.03035 0.94871 0.97664 0.96419 0.92029 0.94770 0.93025 0.76222 0.81434 0.79185 0.82047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.05 8.85 71.98 0.64 -5.41 15 2 C 0.09 4.53 2.67 -12.29 -0.03 4.50 15 3 H 0.04 2.12 5.41 -2.39 -0.01 2.11 15 4 C -0.52 -28.76 8.41 25.60 0.22 -28.55 15 5 H 0.05 2.66 7.72 -2.91 -0.02 2.63 15 6 C 0.02 0.97 5.30 84.66 0.45 1.42 15 7 N -0.91 -52.93 11.32 21.45 0.24 -52.68 15 8 Si 0.95 43.99 29.54 68.60 2.03 46.02 15 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 12 C -0.15 -6.72 5.02 -18.60 -0.09 -6.82 15 13 C -0.02 -0.61 11.43 66.85 0.76 0.15 15 14 O -0.20 -7.21 10.58 -9.20 -0.10 -7.31 15 15 C 0.04 1.34 7.41 22.98 0.17 1.51 15 16 C -0.10 -2.47 10.06 22.34 0.22 -2.25 15 17 C -0.07 -1.48 10.01 22.29 0.22 -1.25 15 18 C -0.13 -3.34 9.82 22.30 0.22 -3.12 15 19 C -0.01 -0.46 6.35 22.49 0.14 -0.32 15 20 Cl -0.07 -2.81 26.45 -2.72 -0.07 -2.88 15 21 C -0.15 -6.26 6.23 -20.20 -0.13 -6.39 15 22 H 0.02 0.79 8.14 -2.38 -0.02 0.77 15 23 H 0.06 3.36 6.07 -2.39 -0.01 3.35 15 24 H 0.03 1.57 8.03 -2.39 -0.02 1.55 15 25 H 0.26 14.33 8.31 -92.71 -0.77 13.56 15 26 H 0.22 7.66 8.06 -2.91 -0.02 7.64 15 27 H 0.17 2.76 8.06 -2.91 -0.02 2.74 15 28 H 0.19 1.82 8.06 -2.91 -0.02 1.80 15 29 H 0.16 3.17 8.06 -2.91 -0.02 3.15 15 Total: -1.00 -65.71 266.69 6.06 -59.65 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.17 Total: 3.72 kcal Atomic # 6 Polarization: -49.31 SS G_CDS: 2.79 Total: -46.52 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.24 Total: -52.68 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.10 Total: -7.31 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 17 Polarization: -2.81 SS G_CDS: -0.07 Total: -2.88 kcal Total: -65.71 6.06 -59.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936501.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.919 kcal (2) G-P(sol) polarization free energy of solvation -65.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds