Wall clock time and date at job start Mon Mar 30 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47312 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46948 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.46809 * 239.99811 * 8 6 4 12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 13 13 C 1.33986 * 126.90676 * 299.68636 * 12 2 1 14 14 O 1.34459 * 110.14375 * 179.83164 * 13 12 2 15 15 C 1.34832 * 110.89154 * 0.45250 * 14 13 12 16 16 C 1.38946 * 133.40554 * 179.72806 * 15 14 13 17 17 C 1.37815 * 119.98380 * 180.02562 * 16 15 14 18 18 C 1.38748 * 120.70304 * 359.96253 * 17 16 15 19 19 C 1.37838 * 120.26105 * 0.04138 * 18 17 16 20 20 Cl 1.73601 * 120.21647 * 180.02562 * 19 18 17 21 21 C 1.39522 * 119.57567 * 359.97438 * 19 18 17 22 22 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 23 23 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 24 24 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 25 25 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 26 26 H 1.08003 * 124.92914 * 359.96799 * 13 12 2 27 27 H 1.08002 * 120.00776 * 359.97438 * 16 15 14 28 28 H 1.07999 * 119.64901 * 179.97438 * 17 16 15 29 29 H 1.08003 * 119.87137 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.1454 -2.2877 3.6038 10 1 3.1467 -0.1874 4.8165 11 1 1.1660 -1.5866 4.8160 12 6 2.0323 -0.7104 -1.2305 13 6 1.8002 -1.9842 -1.5752 14 8 2.4074 -2.2663 -2.7413 15 6 3.0737 -1.1914 -3.2088 16 6 3.8469 -0.9655 -4.3409 17 6 4.4143 0.2726 -4.5517 18 6 4.2222 1.3037 -3.6434 19 6 3.4588 1.1012 -2.5137 20 17 3.2187 2.3923 -1.3784 21 6 2.8794 -0.1480 -2.2890 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 0.7090 1.1614 3.4844 26 1 1.2092 -2.6824 -1.0010 27 1 4.0039 -1.7603 -5.0552 28 1 5.0146 0.4421 -5.4333 29 1 4.6728 2.2689 -3.8221 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259936505.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:34 Heat of formation + Delta-G solvation = 11.803044 kcal Electronic energy + Delta-G solvation = -15781.870885 eV Core-core repulsion = 13082.997008 eV Total energy + Delta-G solvation = -2698.873877 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.92148 -37.68335 -35.91459 -34.87991 -32.11824 -30.16360 -29.82593 -27.92034 -25.11693 -23.04042 -22.21038 -21.92143 -19.09942 -16.97092 -16.68221 -15.85859 -15.58770 -15.50538 -14.57417 -14.23539 -13.78074 -12.94566 -12.79300 -12.71903 -12.20928 -11.83825 -11.55277 -11.06863 -10.99773 -10.93746 -10.86241 -10.61109 -10.34877 -9.90626 -9.65938 -9.23765 -8.74797 -8.34323 -8.31618 -7.44153 -6.00041 -4.06154 1.13346 1.54683 2.56189 3.06749 3.28293 3.29222 3.37424 3.41704 3.89116 4.43605 4.93065 5.04301 5.17281 5.31329 5.38103 5.57274 5.76155 6.07261 6.25907 6.40969 6.42807 6.54091 6.80898 6.87643 6.90350 7.19397 7.31685 7.61772 7.74931 8.01897 8.10118 8.39867 8.95836 9.57860 11.05723 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.025699 B = 0.007997 C = 0.006968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.286634 B = 3500.401111 C = 4017.237714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.088 3.912 3 H 0.059 0.941 4 C -0.507 4.507 5 H 0.055 0.945 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.890 3.110 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.108 4.108 13 C -0.025 4.025 14 O -0.200 6.200 15 C 0.057 3.943 16 C -0.112 4.112 17 C -0.095 4.095 18 C -0.143 4.143 19 C 0.019 3.981 20 Cl -0.048 7.048 21 C -0.121 4.121 22 H 0.087 0.913 23 H 0.008 0.992 24 H 0.025 0.975 25 H 0.260 0.740 26 H 0.207 0.793 27 H 0.130 0.870 28 H 0.137 0.863 29 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.265 -0.584 -11.757 12.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.069 3.931 3 H 0.077 0.923 4 C -0.545 4.545 5 H 0.074 0.926 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.718 3.282 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.109 4.109 13 C -0.088 4.088 14 O -0.102 6.102 15 C 0.009 3.991 16 C -0.131 4.131 17 C -0.113 4.113 18 C -0.162 4.162 19 C -0.008 4.008 20 Cl -0.018 7.018 21 C -0.123 4.123 22 H 0.106 0.894 23 H 0.027 0.973 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.224 0.776 27 H 0.148 0.852 28 H 0.154 0.846 29 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.149 -0.602 -11.635 12.367 hybrid contribution 0.277 -0.290 1.150 1.218 sum 4.426 -0.893 -10.485 11.416 Atomic orbital electron populations 1.21797 0.97712 0.99031 1.00381 1.17615 0.92353 0.96809 0.86282 0.92349 1.21150 1.31128 1.12309 0.89919 0.92638 1.24923 0.95071 0.94987 0.98817 1.69898 1.36703 1.22805 1.23245 0.86555 0.78648 0.79764 0.83189 1.19793 1.21020 1.21038 1.22077 0.97798 0.93809 0.97235 1.23734 1.01313 0.97981 0.85742 1.83972 1.55646 1.35395 1.35178 1.19530 0.97610 0.85772 0.96189 1.19864 0.99380 0.98328 0.95483 1.20691 0.99856 0.91499 0.99250 1.20847 1.01149 1.00405 0.93830 1.20398 0.99035 0.88839 0.92483 1.98395 1.95449 1.48128 1.59853 1.19897 1.01926 0.93244 0.97243 0.89448 0.97292 0.95608 0.93028 0.77621 0.85183 0.84561 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.86 37.16 0.33 -2.84 15 2 C 0.09 2.19 2.67 -92.92 -0.25 1.95 15 3 H 0.06 1.54 5.41 -51.93 -0.28 1.26 15 4 C -0.51 -13.71 8.41 -34.44 -0.29 -14.00 15 5 H 0.06 1.50 7.71 -52.49 -0.40 1.10 15 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 15 7 N -0.89 -25.00 11.32 55.43 0.63 -24.37 15 8 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 15 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 15 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 12 C -0.11 -2.40 5.02 -102.67 -0.52 -2.91 15 13 C -0.02 -0.49 11.43 29.24 0.33 -0.15 15 14 O -0.20 -3.74 10.58 3.81 0.04 -3.69 15 15 C 0.06 1.04 7.41 -38.49 -0.29 0.76 15 16 C -0.11 -1.59 10.06 -39.47 -0.40 -1.99 15 17 C -0.09 -1.19 10.01 -39.55 -0.40 -1.59 15 18 C -0.14 -2.08 9.82 -39.54 -0.39 -2.47 15 19 C 0.02 0.36 6.35 -39.25 -0.25 0.11 15 20 Cl -0.05 -0.91 26.45 -51.86 -1.37 -2.28 15 21 C -0.12 -2.47 6.23 -105.14 -0.65 -3.12 15 22 H 0.09 2.30 6.07 -51.93 -0.32 1.98 15 23 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 15 24 H 0.02 0.57 8.04 -51.93 -0.42 0.15 15 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 26 H 0.21 3.58 8.06 -52.48 -0.42 3.16 15 27 H 0.13 1.45 8.06 -52.49 -0.42 1.03 15 28 H 0.14 1.18 8.06 -52.49 -0.42 0.76 15 29 H 0.13 1.58 8.06 -52.48 -0.42 1.15 15 LS Contribution 266.69 15.07 4.02 4.02 Total: -1.00 -29.27 266.69 -7.23 -36.50 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -2.67 Total: -1.67 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -2.85 Total: -24.63 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.63 Total: -24.37 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: 0.04 Total: -3.69 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.37 Total: -2.28 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.27 -7.23 -36.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936505.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.303 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds