Wall clock time and date at job start Mon Mar 30 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99851 * 2 1 4 4 H 1.48493 * 109.46946 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47263 * 300.00163 * 3 2 1 6 6 H 1.48504 * 109.46847 * 60.00285 * 3 2 1 7 7 C 1.37877 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00038 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47030 * 59.99659 * 9 7 2 11 11 N 1.46898 * 109.46681 * 299.99955 * 9 7 2 12 12 C 1.50693 * 109.46869 * 180.02562 * 9 7 2 13 13 C 1.38833 * 119.73874 * 79.99856 * 12 9 7 14 14 C 1.37745 * 120.66858 * 180.02562 * 13 12 9 15 15 C 1.39137 * 119.77823 * 359.97438 * 14 13 12 16 16 N 1.37672 * 133.48862 * 179.97438 * 15 14 13 17 17 H 0.97012 * 125.06793 * 0.03058 * 16 15 14 18 18 C 1.36988 * 109.86451 * 180.02562 * 16 15 14 19 19 C 1.34278 * 109.89649 * 0.02562 * 18 16 15 20 20 Cl 1.73605 * 126.50115 * 180.02562 * 19 18 16 21 21 C 1.40672 * 119.33025 * 0.02562 * 15 14 13 22 22 C 1.36623 * 119.73310 * 260.01721 * 12 9 7 23 23 H 0.97003 * 119.99883 * 359.97438 * 1 2 3 24 24 H 1.00907 * 111.00150 * 299.99572 * 11 9 7 25 25 H 1.00896 * 111.00888 * 63.95546 * 11 9 7 26 26 H 1.08001 * 119.67005 * 0.04113 * 13 12 9 27 27 H 1.08001 * 120.11400 * 179.72250 * 14 13 12 28 28 H 1.08006 * 125.05019 * 180.02562 * 18 16 15 29 29 H 1.07996 * 120.11973 * 359.96140 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6247 -2.5563 -0.8919 11 7 0.4061 -2.5777 1.1974 12 6 2.2304 -3.6445 -0.0015 13 6 2.8361 -4.0324 1.1860 14 6 3.7345 -5.0764 1.2082 15 6 4.0392 -5.7509 0.0300 16 7 4.8725 -6.8050 -0.2699 17 1 5.4256 -7.2782 0.3714 18 6 4.8039 -7.0862 -1.6089 19 6 3.9461 -6.2453 -2.2091 20 17 3.5343 -6.2200 -3.8954 21 6 3.4227 -5.3539 -1.1705 22 6 2.5153 -4.2926 -1.1699 23 1 -0.4850 0.8401 0.0004 24 1 0.9638 -2.5269 2.0368 25 1 -0.3013 -1.8583 1.1892 26 1 2.6004 -3.5106 2.1017 27 1 4.2039 -5.3677 2.1362 28 1 5.3575 -7.8680 -2.1076 29 1 2.0400 -3.9856 -2.0898 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259951846.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:38 Heat of formation + Delta-G solvation = 44.207058 kcal Electronic energy + Delta-G solvation = -15396.541005 eV Core-core repulsion = 12731.365022 eV Total energy + Delta-G solvation = -2665.175983 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.87647 -37.18750 -36.15421 -34.04193 -31.42013 -31.20771 -28.63119 -28.15342 -25.79067 -22.79063 -22.15241 -20.68855 -19.55471 -17.70418 -16.49217 -15.72087 -15.41119 -14.39138 -14.36811 -14.20487 -13.48261 -13.31126 -13.14197 -12.85269 -12.30076 -11.77736 -11.56351 -11.37940 -10.99219 -10.94904 -10.68128 -10.61528 -10.21488 -9.90387 -9.58356 -9.09289 -8.62331 -7.66915 -7.32703 -7.07453 -6.05535 -4.22615 1.55089 2.22164 2.41900 2.81586 3.23079 3.32052 3.37116 3.46739 4.32349 4.55615 4.87549 5.13674 5.17595 5.53710 5.66235 5.78200 6.03624 6.19107 6.27444 6.59334 6.64496 6.89970 6.97398 7.15452 7.22913 7.61558 7.69683 7.77484 7.85306 8.14248 8.70673 8.96580 9.14459 9.49182 10.91219 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.006085 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.105287 B = 4600.196133 C = 5020.462783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.066 3.934 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.541 4.541 8 H 0.057 0.943 9 C 0.242 3.758 10 H 0.047 0.953 11 N -0.850 5.850 12 C -0.043 4.043 13 C -0.068 4.068 14 C -0.143 4.143 15 C 0.083 3.917 16 N -0.593 5.593 17 H 0.415 0.585 18 C 0.055 3.945 19 C -0.121 4.121 20 Cl -0.054 7.054 21 C -0.096 4.096 22 C -0.077 4.077 23 H 0.264 0.736 24 H 0.310 0.690 25 H 0.355 0.645 26 H 0.125 0.875 27 H 0.114 0.886 28 H 0.171 0.829 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.544 -12.435 -0.568 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.581 4.581 8 H 0.075 0.925 9 C 0.132 3.868 10 H 0.065 0.935 11 N -0.380 5.380 12 C -0.045 4.045 13 C -0.087 4.087 14 C -0.164 4.164 15 C -0.022 4.022 16 N -0.198 5.198 17 H 0.252 0.748 18 C -0.073 4.073 19 C -0.156 4.156 20 Cl -0.025 7.025 21 C -0.101 4.101 22 C -0.096 4.096 23 H 0.074 0.926 24 H 0.119 0.881 25 H 0.172 0.828 26 H 0.143 0.857 27 H 0.132 0.868 28 H 0.188 0.812 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.194 -13.096 -0.933 15.477 hybrid contribution 1.164 1.708 0.210 2.078 sum 9.358 -11.388 -0.722 14.758 Atomic orbital electron populations 1.69757 1.05827 1.27037 1.50677 1.25020 0.94919 0.99267 0.94449 0.86482 0.80204 0.83375 0.77630 1.19736 1.20872 1.21011 1.21890 0.93724 0.91043 1.51443 0.92512 1.17977 0.88954 0.88115 0.91780 0.93503 1.59540 1.18436 1.56089 1.03905 1.19996 0.96941 0.95939 0.91594 1.20762 0.94463 0.94804 0.98720 1.19932 1.02880 0.99061 0.94491 1.18060 0.96293 0.92295 0.95507 1.41516 1.40146 1.30445 1.07668 0.74765 1.21281 1.01512 1.01149 0.83342 1.20797 1.06361 1.03260 0.85207 1.98300 1.93187 1.98249 1.12798 1.18822 1.01487 0.98972 0.90778 1.20126 0.97030 0.93829 0.98644 0.92558 0.88052 0.82843 0.85719 0.86824 0.81180 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.56 11.54 55.43 0.64 -23.92 15 2 C 0.07 1.76 5.38 -17.82 -0.10 1.67 15 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 15 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.54 -14.51 8.70 -34.44 -0.30 -14.81 15 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 15 9 C 0.24 6.02 2.94 -70.02 -0.21 5.81 15 10 H 0.05 1.29 7.97 -51.93 -0.41 0.87 15 11 N -0.85 -20.10 9.01 -6.65 -0.06 -20.16 15 12 C -0.04 -0.94 4.86 -104.99 -0.51 -1.45 15 13 C -0.07 -1.31 9.25 -39.54 -0.37 -1.67 15 14 C -0.14 -2.35 10.08 -39.43 -0.40 -2.74 15 15 C 0.08 1.37 7.28 -83.99 -0.61 0.76 15 16 N -0.59 -7.28 6.08 -10.60 -0.06 -7.35 15 17 H 0.42 3.50 8.96 -40.81 -0.37 3.13 15 18 C 0.06 0.68 11.80 -16.64 -0.20 0.48 15 19 C -0.12 -1.90 6.91 -37.64 -0.26 -2.16 15 20 Cl -0.05 -0.79 29.32 -51.86 -1.52 -2.31 15 21 C -0.10 -1.78 6.37 -105.12 -0.67 -2.45 15 22 C -0.08 -1.60 9.65 -39.64 -0.38 -1.98 15 23 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 24 H 0.31 6.85 7.30 -39.29 -0.29 6.56 15 25 H 0.36 9.01 7.08 -39.29 -0.28 8.73 15 26 H 0.12 2.29 6.62 -52.49 -0.35 1.94 15 27 H 0.11 1.50 8.06 -52.49 -0.42 1.07 15 28 H 0.17 1.42 8.06 -52.48 -0.42 0.99 15 29 H 0.12 2.49 8.01 -52.49 -0.42 2.07 15 LS Contribution 268.14 15.07 4.04 4.04 Total: -1.00 -29.10 268.14 -8.48 -37.58 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -2.50 Total: 14.71 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -3.99 Total: -18.55 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.52 Total: -51.43 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.52 Total: -2.31 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.10 -8.48 -37.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951846.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.789 kcal (2) G-P(sol) polarization free energy of solvation -29.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds