Wall clock time and date at job start Mon Mar 30 2020 06:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99851 * 2 1 4 4 H 1.48493 * 109.46946 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47263 * 300.00163 * 3 2 1 6 6 H 1.48504 * 109.46847 * 60.00285 * 3 2 1 7 7 C 1.37877 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99826 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00038 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47030 * 59.99659 * 9 7 2 11 11 N 1.46898 * 109.46681 * 299.99955 * 9 7 2 12 12 C 1.50693 * 109.46869 * 180.02562 * 9 7 2 13 13 C 1.38833 * 119.73874 * 79.99856 * 12 9 7 14 14 C 1.37745 * 120.66858 * 180.02562 * 13 12 9 15 15 C 1.39137 * 119.77823 * 359.97438 * 14 13 12 16 16 N 1.37672 * 133.48862 * 179.97438 * 15 14 13 17 17 H 0.97012 * 125.06793 * 0.03058 * 16 15 14 18 18 C 1.36988 * 109.86451 * 180.02562 * 16 15 14 19 19 C 1.34278 * 109.89649 * 0.02562 * 18 16 15 20 20 Cl 1.73605 * 126.50115 * 180.02562 * 19 18 16 21 21 C 1.40672 * 119.33025 * 0.02562 * 15 14 13 22 22 C 1.36623 * 119.73310 * 260.01721 * 12 9 7 23 23 H 0.97003 * 119.99883 * 359.97438 * 1 2 3 24 24 H 1.00907 * 111.00150 * 299.99572 * 11 9 7 25 25 H 1.00896 * 111.00888 * 63.95546 * 11 9 7 26 26 H 1.08001 * 119.67005 * 0.04113 * 13 12 9 27 27 H 1.08001 * 120.11400 * 179.72250 * 14 13 12 28 28 H 1.08006 * 125.05019 * 180.02562 * 18 16 15 29 29 H 1.07996 * 120.11973 * 359.96140 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6247 -2.5563 -0.8919 11 7 0.4061 -2.5777 1.1974 12 6 2.2304 -3.6445 -0.0015 13 6 2.8361 -4.0324 1.1860 14 6 3.7345 -5.0764 1.2082 15 6 4.0392 -5.7509 0.0300 16 7 4.8725 -6.8050 -0.2699 17 1 5.4256 -7.2782 0.3714 18 6 4.8039 -7.0862 -1.6089 19 6 3.9461 -6.2453 -2.2091 20 17 3.5343 -6.2200 -3.8954 21 6 3.4227 -5.3539 -1.1705 22 6 2.5153 -4.2926 -1.1699 23 1 -0.4850 0.8401 0.0004 24 1 0.9638 -2.5269 2.0368 25 1 -0.3013 -1.8583 1.1892 26 1 2.6004 -3.5106 2.1017 27 1 4.2039 -5.3677 2.1362 28 1 5.3575 -7.8680 -2.1076 29 1 2.0400 -3.9856 -2.0898 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259951846.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:38 Heat of formation + Delta-G solvation = 25.086408 kcal Electronic energy + Delta-G solvation = -15397.370139 eV Core-core repulsion = 12731.365022 eV Total energy + Delta-G solvation = -2666.005116 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.10687 -38.69918 -37.28569 -35.85213 -33.21271 -32.65910 -30.09862 -29.46174 -27.78662 -24.47677 -23.54330 -21.91554 -21.05184 -18.94612 -18.51918 -17.19452 -17.01859 -16.26395 -15.56661 -15.41875 -14.98971 -14.77384 -14.69100 -14.53539 -13.66888 -13.38188 -13.25842 -12.89592 -12.81824 -12.61882 -12.29717 -12.19952 -11.78006 -11.49744 -11.41093 -10.69564 -10.38134 -9.23262 -8.97604 -8.52495 -8.07363 -6.35905 0.24918 0.77954 1.32499 1.36376 1.39538 1.50910 1.62438 2.37189 2.38370 3.03442 3.09481 3.76357 3.95790 4.25186 4.42921 4.45754 4.67704 4.75976 4.80896 4.89084 5.17983 5.33226 5.57022 5.61069 5.64859 5.70770 6.00527 6.19683 6.27592 6.66990 6.71559 6.95231 7.15501 7.40939 8.84443 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.006085 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.105287 B = 4600.196133 C = 5020.462783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.021 3.979 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.555 4.555 8 H 0.046 0.954 9 C 0.246 3.754 10 H 0.004 0.996 11 N -0.841 5.841 12 C -0.068 4.068 13 C -0.091 4.091 14 C -0.120 4.120 15 C 0.079 3.921 16 N -0.570 5.570 17 H 0.440 0.560 18 C 0.099 3.901 19 C -0.165 4.165 20 Cl -0.054 7.054 21 C -0.116 4.116 22 C -0.102 4.102 23 H 0.267 0.733 24 H 0.320 0.680 25 H 0.344 0.656 26 H 0.127 0.873 27 H 0.155 0.845 28 H 0.222 0.778 29 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.169 -14.245 0.289 18.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.594 4.594 8 H 0.064 0.936 9 C 0.136 3.864 10 H 0.022 0.978 11 N -0.370 5.370 12 C -0.070 4.070 13 C -0.111 4.111 14 C -0.140 4.140 15 C -0.028 4.028 16 N -0.176 5.176 17 H 0.281 0.719 18 C -0.030 4.030 19 C -0.199 4.199 20 Cl -0.026 7.026 21 C -0.120 4.120 22 C -0.121 4.121 23 H 0.077 0.923 24 H 0.130 0.870 25 H 0.159 0.841 26 H 0.145 0.855 27 H 0.173 0.827 28 H 0.239 0.761 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.845 -14.938 -0.046 18.459 hybrid contribution 0.410 2.122 -0.107 2.164 sum 11.254 -12.816 -0.153 17.057 Atomic orbital electron populations 1.69860 1.06941 1.27867 1.50988 1.25753 0.95741 1.02319 0.94068 0.85494 0.78804 0.79446 0.77773 1.19712 1.20733 1.20029 1.22065 0.93269 0.92370 1.51724 0.93583 1.17742 0.88933 0.89329 0.90369 0.97835 1.59485 1.18149 1.55293 1.04072 1.19766 0.97793 0.96026 0.93416 1.20763 0.96107 0.96621 0.97593 1.20226 1.00756 0.96933 0.96129 1.18117 0.96689 0.93274 0.94681 1.41541 1.38881 1.28855 1.08342 0.71870 1.22024 0.98588 0.99674 0.82755 1.20959 1.08779 1.04762 0.85374 1.98292 1.93410 1.98316 1.12578 1.19081 1.01082 0.98614 0.93250 1.20012 0.98812 0.95722 0.97547 0.92345 0.86971 0.84125 0.85521 0.82692 0.76133 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.86 11.54 21.45 0.25 -51.62 15 2 C 0.02 1.16 5.38 84.65 0.46 1.62 15 3 Si 0.96 43.69 29.54 68.60 2.03 45.72 15 4 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 15 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 7 C -0.55 -30.91 8.70 25.60 0.22 -30.69 15 8 H 0.05 2.60 7.74 -2.91 -0.02 2.58 15 9 C 0.25 13.00 2.94 43.42 0.13 13.13 15 10 H 0.00 0.22 7.97 -2.39 -0.02 0.20 15 11 N -0.84 -41.49 9.01 -174.97 -1.58 -43.07 15 12 C -0.07 -3.13 4.86 -20.10 -0.10 -3.22 15 13 C -0.09 -3.50 9.25 22.30 0.21 -3.29 15 14 C -0.12 -3.64 10.08 22.37 0.23 -3.41 15 15 C 0.08 2.36 7.28 39.04 0.28 2.65 15 16 N -0.57 -11.19 6.08 -187.46 -1.14 -12.33 15 17 H 0.44 4.72 8.96 -92.70 -0.83 3.89 15 18 C 0.10 1.97 11.80 82.98 0.98 2.95 15 19 C -0.16 -4.83 6.91 23.53 0.16 -4.67 15 20 Cl -0.05 -1.54 29.32 -2.72 -0.08 -1.62 15 21 C -0.12 -4.20 6.37 -20.19 -0.13 -4.33 15 22 C -0.10 -4.44 9.65 22.23 0.21 -4.22 15 23 H 0.27 14.30 8.31 -92.71 -0.77 13.53 15 24 H 0.32 14.54 7.30 -89.69 -0.66 13.88 15 25 H 0.34 18.21 7.08 -89.70 -0.63 17.58 15 26 H 0.13 4.65 6.62 -2.91 -0.02 4.63 15 27 H 0.16 3.35 8.06 -2.91 -0.02 3.33 15 28 H 0.22 2.17 8.06 -2.91 -0.02 2.15 15 29 H 0.10 4.47 8.01 -2.91 -0.02 4.45 15 Total: -1.00 -66.35 268.14 1.23 -65.13 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: -0.90 Total: 31.29 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 2.65 Total: -33.49 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -2.47 Total: -107.02 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -66.35 1.23 -65.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951846.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.212 kcal (2) G-P(sol) polarization free energy of solvation -66.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds