Wall clock time and date at job start Mon Mar 30 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 C 1.50701 * 109.47433 * 120.00046 * 2 1 3 13 13 C 1.38731 * 119.79212 * 60.00314 * 12 2 1 14 14 C 1.37865 * 120.68580 * 179.97438 * 13 12 2 15 15 C 1.38918 * 119.82297 * 359.97438 * 14 13 12 16 16 O 1.34842 * 133.47307 * 180.02562 * 15 14 13 17 17 C 1.34452 * 110.89883 * 180.02562 * 16 15 14 18 18 Cl 1.73589 * 124.94135 * 180.02562 * 17 16 15 19 19 C 1.34180 * 110.11785 * 0.02562 * 17 16 15 20 20 C 1.40493 * 119.22256 * 0.02562 * 15 14 13 21 21 C 1.36749 * 119.79090 * 239.72861 * 12 2 1 22 22 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 23 23 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 25 25 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 26 26 H 1.08002 * 119.65540 * 359.95408 * 13 12 2 27 27 H 1.08000 * 120.08808 * 179.97438 * 14 13 12 28 28 H 1.08000 * 126.91030 * 180.02562 * 19 17 16 29 29 H 1.07999 * 120.14893 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 6 2.0324 -0.7104 1.2304 13 6 1.6947 -2.0387 1.4457 14 6 2.1446 -2.7066 2.5647 15 6 2.9450 -2.0461 3.4883 16 8 3.5247 -2.4183 4.6474 17 6 4.2157 -1.3989 5.1871 18 17 5.1028 -1.4777 6.6771 19 6 4.1198 -0.3119 4.4063 20 6 3.2835 -0.7010 3.2647 21 6 2.8229 -0.0433 2.1249 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 0.7087 1.1613 -3.4844 26 1 1.0727 -2.5547 0.7293 27 1 1.8755 -3.7405 2.7228 28 1 4.5690 0.6544 4.5819 29 1 3.0872 0.9892 1.9506 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259955856.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:19 Heat of formation + Delta-G solvation = 3.935815 kcal Electronic energy + Delta-G solvation = -15297.268801 eV Core-core repulsion = 12598.053775 eV Total energy + Delta-G solvation = -2699.215026 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.47251 -39.47856 -38.08675 -35.93073 -33.81911 -33.06751 -30.51530 -29.46127 -27.17571 -24.49974 -23.81143 -22.40079 -21.58447 -18.78616 -18.36159 -17.83398 -17.41397 -16.92841 -16.03823 -15.30560 -15.01659 -14.53061 -14.25622 -14.13955 -13.71713 -13.59196 -13.30627 -13.09760 -12.79937 -12.62707 -12.52071 -12.17933 -12.13540 -11.81537 -11.34502 -11.05664 -10.97775 -10.44347 -9.30946 -9.15009 -8.07593 -6.21418 -0.12640 0.00667 0.45167 1.20996 1.45474 1.45805 1.53412 2.19740 2.44731 2.82547 3.20686 3.62709 3.85019 3.97432 4.18055 4.44727 4.51963 4.61227 4.83073 4.92229 5.05008 5.16329 5.27343 5.28490 5.42800 5.53134 5.61075 5.69214 6.04350 6.05131 6.15163 6.37150 6.87081 7.46654 8.96573 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.044643 B = 0.004721 C = 0.004670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.041387 B = 5929.715535 C = 5993.784366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.074 3.926 3 H 0.008 0.992 4 C -0.523 4.523 5 H 0.054 0.946 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.952 3.048 9 H -0.285 1.285 10 H -0.275 1.275 11 H -0.269 1.269 12 C -0.063 4.063 13 C -0.078 4.078 14 C -0.104 4.104 15 C 0.030 3.970 16 O -0.200 6.200 17 C 0.051 3.949 18 Cl 0.047 6.953 19 C -0.164 4.164 20 C -0.140 4.140 21 C -0.090 4.090 22 H 0.060 0.940 23 H 0.037 0.963 24 H 0.025 0.975 25 H 0.262 0.738 26 H 0.140 0.860 27 H 0.157 0.843 28 H 0.191 0.809 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.053 -4.274 14.320 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.056 3.944 3 H 0.026 0.974 4 C -0.561 4.561 5 H 0.072 0.928 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.777 3.223 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.194 1.194 12 C -0.063 4.063 13 C -0.096 4.096 14 C -0.122 4.122 15 C -0.017 4.017 16 O -0.104 6.104 17 C -0.022 4.022 18 Cl 0.076 6.924 19 C -0.184 4.184 20 C -0.141 4.141 21 C -0.108 4.108 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.158 0.842 27 H 0.174 0.826 28 H 0.208 0.792 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.027 -4.430 14.435 15.914 hybrid contribution 0.357 -0.060 -0.863 0.936 sum 5.385 -4.490 13.572 15.276 Atomic orbital electron populations 1.21653 0.97119 0.99627 0.99803 1.17732 0.93324 0.94055 0.89280 0.97391 1.21363 1.31203 1.12502 0.91009 0.92752 1.25675 0.95237 0.95661 1.01674 1.70000 1.37456 1.23974 1.24083 0.85707 0.78633 0.78987 0.78928 1.21085 1.20079 1.19386 1.20136 0.95611 0.94828 0.95747 1.21007 0.98892 0.93937 0.95750 1.20131 0.98694 1.01281 0.92130 1.19650 1.00506 0.94458 0.87047 1.83788 1.55989 1.37842 1.32755 1.22387 0.99519 0.87460 0.92848 1.98429 1.70000 1.98072 1.25944 1.22470 1.03066 0.99974 0.92926 1.19935 1.02387 0.94408 0.97358 1.20283 0.97940 1.00326 0.92249 0.92130 0.94416 0.95630 0.92914 0.84195 0.82580 0.79173 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.78 71.98 0.63 -5.16 15 2 C 0.07 3.63 2.47 -12.29 -0.03 3.60 15 3 H 0.01 0.42 7.85 -2.38 -0.02 0.41 15 4 C -0.52 -27.66 8.23 25.60 0.21 -27.45 15 5 H 0.05 2.84 7.60 -2.91 -0.02 2.82 15 6 C 0.02 0.88 5.30 84.66 0.45 1.33 15 7 N -0.92 -51.32 11.32 21.45 0.24 -51.08 15 8 Si 0.95 42.46 29.54 68.60 2.03 44.49 15 9 H -0.29 -12.55 7.11 99.48 0.71 -11.85 15 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 11 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 12 C -0.06 -2.61 4.70 -20.10 -0.09 -2.71 15 13 C -0.08 -2.86 8.67 22.30 0.19 -2.67 15 14 C -0.10 -3.33 10.07 22.34 0.23 -3.11 15 15 C 0.03 1.00 7.42 22.98 0.17 1.17 15 16 O -0.20 -6.19 10.58 -9.29 -0.10 -6.28 15 17 C 0.05 1.37 7.84 66.89 0.52 1.89 15 18 Cl 0.05 0.93 29.28 -2.72 -0.08 0.85 15 19 C -0.16 -4.48 11.09 23.58 0.26 -4.22 15 20 C -0.14 -4.76 6.40 -20.21 -0.13 -4.89 15 21 C -0.09 -3.40 9.66 22.21 0.21 -3.18 15 22 H 0.06 3.14 6.07 -2.39 -0.01 3.13 15 23 H 0.04 1.64 7.36 -2.39 -0.02 1.62 15 24 H 0.02 1.06 8.14 -2.39 -0.02 1.04 15 25 H 0.26 14.03 8.31 -92.70 -0.77 13.25 15 26 H 0.14 5.03 7.54 -2.91 -0.02 5.01 15 27 H 0.16 3.94 8.06 -2.91 -0.02 3.92 15 28 H 0.19 3.94 8.06 -2.91 -0.02 3.92 15 29 H 0.13 4.58 7.92 -2.91 -0.02 4.56 15 Total: -1.00 -57.78 269.56 5.88 -51.90 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.17 Total: 5.53 kcal Atomic # 6 Polarization: -48.02 SS G_CDS: 2.63 Total: -45.40 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.24 Total: -51.08 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.10 Total: -6.28 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 17 Polarization: 0.93 SS G_CDS: -0.08 Total: 0.85 kcal Total: -57.78 5.88 -51.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955856.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.832 kcal (2) G-P(sol) polarization free energy of solvation -57.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds