Wall clock time and date at job start Mon Mar 30 2020 05:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37225 * 119.72486 * 2 1 4 4 C 1.38517 * 121.04907 * 180.02562 * 3 2 1 5 5 C 1.38892 * 119.48257 * 0.02562 * 4 3 2 6 6 C 1.36512 * 119.92727 * 359.97438 * 5 4 3 7 7 C 1.40793 * 122.15723 * 0.02562 * 6 5 4 8 8 C 1.45413 * 114.95673 * 180.02562 * 7 6 5 9 9 C 1.37959 * 118.16006 * 359.97438 * 8 7 6 10 10 C 1.38803 * 128.20261 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00439 * 180.02562 * 10 9 8 12 12 C 1.40665 * 119.99698 * 0.02668 * 10 9 8 13 13 N 1.30537 * 120.00018 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00075 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.46530 * 90.00297 * 14 12 10 16 16 H 1.48496 * 109.47355 * 209.99848 * 14 12 10 17 17 H 1.48494 * 109.46963 * 330.00352 * 14 12 10 18 18 S 1.77410 * 133.40104 * 180.02562 * 6 5 4 19 19 O 1.42102 * 107.69720 * 68.10238 * 18 6 5 20 20 O 1.42101 * 107.69643 * 291.84533 * 18 6 5 21 21 H 1.09001 * 109.47354 * 270.01760 * 1 2 3 22 22 H 1.08999 * 109.47695 * 30.02360 * 1 2 3 23 23 H 1.09004 * 109.47070 * 150.01655 * 1 2 3 24 24 H 1.08009 * 119.48062 * 0.02562 * 3 2 1 25 25 H 1.08003 * 120.26217 * 179.97438 * 4 3 2 26 26 H 1.08000 * 120.03497 * 180.02562 * 5 4 3 27 27 H 1.08000 * 120.92545 * 180.02562 * 8 7 6 28 28 H 0.97000 * 120.00053 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.1917 0.0000 4 6 3.5722 1.2237 -0.0005 5 6 4.2835 0.0307 -0.0016 6 6 3.6162 -1.1601 -0.0016 7 6 2.2100 -1.2311 -0.0011 8 6 1.6638 -2.5788 -0.0006 9 6 2.5464 -3.6391 -0.0012 10 6 2.2572 -4.9967 -0.0004 11 1 3.0594 -5.7197 -0.0006 12 6 0.9192 -5.4307 0.0007 13 7 -0.0504 -4.5568 0.0004 14 14 0.5300 -7.2578 0.0010 15 1 0.4280 -7.7417 1.4013 16 1 -0.7596 -7.4893 -0.6979 17 1 1.6122 -7.9945 -0.6998 18 16 4.1447 -2.8537 -0.0022 19 8 4.7559 -3.1159 1.2536 20 8 4.7538 -3.1156 -1.2590 21 1 -0.3634 0.0003 1.0277 22 1 -0.3634 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5136 24 1 1.6344 2.1195 0.0004 25 1 4.0948 2.1689 -0.0009 26 1 5.3634 0.0453 -0.0016 27 1 0.5966 -2.7451 -0.0006 28 1 -0.9731 -4.8562 0.0008 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259958507.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:09 Heat of formation + Delta-G solvation = -62.582741 kcal Electronic energy + Delta-G solvation = -15895.168444 eV Core-core repulsion = 13195.112663 eV Total energy + Delta-G solvation = -2700.055781 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.09407 -38.05092 -37.11739 -36.77311 -34.39552 -33.52710 -31.31569 -28.30451 -26.90687 -24.27234 -22.84035 -21.58747 -19.92101 -19.20962 -18.01520 -17.62383 -16.77757 -16.57062 -16.03808 -15.59371 -14.79187 -14.64532 -14.55929 -14.17838 -13.38955 -13.37548 -13.25664 -13.19418 -13.05129 -12.99191 -12.95096 -12.84358 -12.08756 -11.91039 -11.85005 -11.45516 -11.01819 -10.84504 -9.97854 -9.36436 -8.89624 -6.69365 -0.46388 -0.28896 0.39902 1.27695 1.32359 1.52263 1.69838 2.04384 2.22496 2.59484 2.61376 3.01854 3.92432 4.05675 4.07653 4.25790 4.45006 4.53162 4.65894 4.76317 4.87105 4.94359 5.03622 5.32679 5.38403 5.42685 5.54236 5.70308 5.74648 6.06680 6.21334 6.39935 6.55095 7.81643 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.026085 B = 0.009221 C = 0.007130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.162118 B = 3035.918037 C = 3926.203483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.159 4.159 3 C -0.057 4.057 4 C -0.199 4.199 5 C 0.000 4.000 6 C -0.724 4.724 7 C 0.046 3.954 8 C -0.374 4.374 9 C -0.438 4.438 10 C -0.314 4.314 11 H 0.114 0.886 12 C 0.005 3.995 13 N -0.743 5.743 14 Si 1.008 2.992 15 H -0.251 1.251 16 H -0.253 1.253 17 H -0.245 1.245 18 S 2.534 3.466 19 O -0.987 6.987 20 O -0.987 6.987 21 H 0.066 0.934 22 H 0.085 0.915 23 H 0.049 0.951 24 H 0.155 0.845 25 H 0.160 0.840 26 H 0.137 0.863 27 H 0.158 0.842 28 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 3.487 -0.015 4.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C -0.074 4.074 4 C -0.218 4.218 5 C -0.019 4.019 6 C -0.816 4.816 7 C 0.043 3.957 8 C -0.398 4.398 9 C -0.535 4.535 10 C -0.339 4.339 11 H 0.132 0.868 12 C -0.219 4.219 13 N -0.362 5.362 14 Si 0.823 3.177 15 H -0.175 1.175 16 H -0.177 1.177 17 H -0.168 1.168 18 S 2.725 3.275 19 O -0.984 6.984 20 O -0.984 6.984 21 H 0.084 0.916 22 H 0.104 0.896 23 H 0.068 0.932 24 H 0.173 0.827 25 H 0.178 0.822 26 H 0.155 0.845 27 H 0.174 0.826 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.719 3.112 -0.022 3.555 hybrid contribution -1.050 -0.187 0.023 1.067 sum -2.770 2.925 0.001 4.028 Atomic orbital electron populations 1.20612 0.90137 1.02560 1.02036 1.20236 0.97048 0.91484 1.07230 1.21203 0.94812 0.97190 0.94242 1.21485 0.94334 0.97817 1.08187 1.20160 0.99725 0.90373 0.91673 1.29804 1.04917 1.18522 1.28362 1.19839 0.91164 0.94849 0.89811 1.21862 1.03462 0.86522 1.27985 1.28653 1.17129 1.01502 1.06256 1.19758 0.95486 0.90852 1.27788 0.86821 1.27653 0.94585 1.07329 0.92291 1.69464 1.02974 1.39514 1.24278 0.84804 0.79989 0.72157 0.80722 1.17450 1.17666 1.16761 1.03384 0.75151 0.76054 0.72945 1.93445 1.76439 1.85301 1.43218 1.93445 1.76520 1.85305 1.43147 0.91581 0.89602 0.93174 0.82713 0.82199 0.84517 0.82551 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.29 9.81 71.24 0.70 -2.59 15 2 C -0.16 -6.40 5.95 -19.23 -0.11 -6.51 15 3 C -0.06 -1.88 9.58 22.10 0.21 -1.67 15 4 C -0.20 -6.53 10.12 22.49 0.23 -6.30 15 5 C 0.00 0.00 10.01 22.02 0.22 0.22 15 6 C -0.72 -34.17 6.50 22.49 0.15 -34.03 15 7 C 0.05 2.21 5.97 -19.93 -0.12 2.09 15 8 C -0.37 -19.68 8.96 24.05 0.22 -19.47 15 9 C -0.44 -23.24 6.30 22.34 0.14 -23.10 15 10 C -0.31 -15.58 9.42 23.00 0.22 -15.36 15 11 H 0.11 5.07 7.86 -2.91 -0.02 5.05 15 12 C 0.01 0.23 5.51 85.48 0.47 0.70 15 13 N -0.74 -34.04 10.32 21.96 0.23 -33.81 15 14 Si 1.01 31.78 29.57 68.60 2.03 33.81 15 15 H -0.25 -7.57 7.11 99.48 0.71 -6.86 15 16 H -0.25 -7.37 7.11 99.48 0.71 -6.66 15 17 H -0.24 -7.44 7.11 99.48 0.71 -6.73 15 18 S 2.53 127.87 6.00 -56.49 -0.34 127.53 15 19 O -0.99 -52.34 18.01 -128.19 -2.31 -54.65 15 20 O -0.99 -52.38 18.01 -128.19 -2.31 -54.69 15 21 H 0.07 2.11 8.14 -2.39 -0.02 2.09 15 22 H 0.09 2.27 8.08 -2.39 -0.02 2.25 15 23 H 0.05 1.88 7.10 -2.38 -0.02 1.86 15 24 H 0.16 3.73 8.06 -2.91 -0.02 3.70 15 25 H 0.16 3.78 8.06 -2.91 -0.02 3.76 15 26 H 0.14 4.51 8.06 -2.91 -0.02 4.49 15 27 H 0.16 8.34 4.63 -2.91 -0.01 8.33 15 28 H 0.31 12.11 8.29 -92.71 -0.77 11.35 15 Total: -1.00 -66.02 259.62 0.80 -65.21 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 1.19 Total: 22.62 kcal Atomic # 6 Polarization: -108.34 SS G_CDS: 2.31 Total: -106.02 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.23 Total: -33.81 kcal Atomic # 8 Polarization: -104.72 SS G_CDS: -4.62 Total: -109.33 kcal Atomic # 14 Polarization: 31.78 SS G_CDS: 2.03 Total: 33.81 kcal Atomic # 16 Polarization: 127.87 SS G_CDS: -0.34 Total: 127.53 kcal Total: -66.02 0.80 -65.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259958507.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.632 kcal (2) G-P(sol) polarization free energy of solvation -66.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds