Wall clock time and date at job start Mon Mar 30 2020 06:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46699 * 2 1 4 4 C 1.50695 * 109.47209 * 239.99853 * 2 1 3 5 5 H 1.08010 * 119.99435 * 269.08839 * 4 2 1 6 6 C 1.37872 * 120.00409 * 89.08746 * 4 2 1 7 7 N 1.31519 * 119.99775 * 352.54542 * 6 4 2 8 8 Si 1.86799 * 120.00176 * 172.54330 * 6 4 2 9 9 H 1.48506 * 109.46849 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47238 * 299.99977 * 8 6 4 11 11 H 1.48495 * 109.47215 * 60.00488 * 8 6 4 12 12 C 1.50708 * 109.46818 * 119.99569 * 2 1 3 13 13 N 1.31526 * 125.49124 * 59.69472 * 12 2 1 14 14 N 1.40037 * 108.92134 * 179.87583 * 13 12 2 15 15 C 1.36584 * 132.44556 * 180.09178 * 14 13 12 16 16 C 1.34913 * 120.65215 * 180.31993 * 15 14 13 17 17 C 1.40490 * 120.44378 * 0.02562 * 16 15 14 18 18 C 1.36065 * 119.60353 * 359.97438 * 17 16 15 19 19 C 1.37217 * 107.44517 * 0.38881 * 14 13 12 20 20 C 1.38583 * 125.49181 * 240.00311 * 12 2 1 21 21 Cl 1.73599 * 126.22084 * 359.97438 * 20 12 2 22 22 H 1.09000 * 109.46949 * 57.32863 * 1 2 3 23 23 H 1.09001 * 109.46791 * 177.32569 * 1 2 3 24 24 H 1.08999 * 109.47483 * 297.32820 * 1 2 3 25 25 H 0.96999 * 119.99716 * 354.49942 * 7 6 4 26 26 H 1.08007 * 119.67272 * 0.30308 * 15 14 13 27 27 H 1.08002 * 119.77855 * 180.02562 * 16 15 14 28 28 H 1.07997 * 120.20305 * 180.02562 * 17 16 15 29 29 H 1.08003 * 120.38776 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.2264 -1.7725 -1.1993 6 6 2.2443 -0.0048 -2.3957 7 7 1.8716 1.2537 -2.4794 8 14 3.0609 -0.8361 -3.8557 9 1 3.1729 0.1311 -4.9771 10 1 4.4164 -1.3009 -3.4663 11 1 2.2429 -1.9990 -4.2844 12 6 2.0324 -0.7104 1.2306 13 7 1.7774 -1.9610 1.5479 14 7 2.4170 -2.2624 2.7566 15 6 2.4750 -3.4000 3.5103 16 6 3.1724 -3.4253 4.6650 17 6 3.8510 -2.2793 5.1119 18 6 3.8028 -1.1382 4.3723 19 6 3.0710 -1.1290 3.1697 20 6 2.8324 -0.1493 2.2133 21 17 3.4283 1.4809 2.2440 22 1 -0.3633 0.5548 -0.8651 23 1 -0.3633 -1.0266 -0.0480 24 1 -0.3634 0.4718 0.9129 25 1 1.3767 1.6623 -1.7520 26 1 1.9573 -4.2880 3.1787 27 1 3.2091 -4.3326 5.2496 28 1 4.4084 -2.3040 6.0366 29 1 4.3202 -0.2500 4.7038 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259965831.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:01 Heat of formation + Delta-G solvation = 84.313782 kcal Electronic energy + Delta-G solvation = -15643.538538 eV Core-core repulsion = 12980.101713 eV Total energy + Delta-G solvation = -2663.436825 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.63715 -37.32875 -35.83266 -34.43990 -32.51681 -31.14603 -29.19373 -27.87223 -24.86444 -23.49813 -22.89720 -21.47700 -19.57640 -17.23200 -17.04403 -16.16943 -15.55685 -15.30822 -14.53871 -14.09643 -13.73036 -13.61769 -12.75598 -12.36446 -12.03512 -11.81135 -11.48405 -11.21377 -11.10068 -10.84542 -10.79269 -10.66077 -10.08113 -9.98997 -9.85951 -9.74616 -8.95921 -8.48065 -8.28462 -7.16672 -6.36330 -4.07109 0.90693 1.28846 2.31078 3.12194 3.21089 3.47043 3.48733 3.51002 3.67273 4.50951 4.55950 4.70923 4.91929 4.99002 5.17525 5.38479 5.63081 5.74893 5.81125 6.07607 6.24238 6.44997 6.55692 6.58451 6.81277 6.96770 7.14239 7.23521 7.52257 8.02506 8.19196 8.47002 8.84803 9.61830 11.01817 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.026011 B = 0.007303 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.221621 B = 3832.888899 C = 4244.764945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.090 3.910 3 H 0.062 0.938 4 C -0.584 4.584 5 H 0.054 0.946 6 C 0.025 3.975 7 N -0.905 5.905 8 Si 1.066 2.934 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.287 1.287 12 C 0.179 3.821 13 N -0.303 5.303 14 N -0.281 5.281 15 C 0.124 3.876 16 C -0.182 4.182 17 C -0.088 4.088 18 C -0.111 4.111 19 C 0.101 3.899 20 C -0.201 4.201 21 Cl -0.041 7.041 22 H 0.054 0.946 23 H 0.045 0.955 24 H 0.019 0.981 25 H 0.271 0.729 26 H 0.165 0.835 27 H 0.150 0.850 28 H 0.137 0.863 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.076 -5.932 14.665 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.069 3.931 3 H 0.080 0.920 4 C -0.622 4.622 5 H 0.073 0.927 6 C -0.180 4.180 7 N -0.541 5.541 8 Si 0.894 3.106 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.214 1.214 12 C 0.020 3.980 13 N -0.125 5.125 14 N -0.047 5.047 15 C -0.002 4.002 16 C -0.205 4.205 17 C -0.111 4.111 18 C -0.131 4.131 19 C -0.018 4.018 20 C -0.239 4.239 21 Cl -0.013 7.013 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.038 0.962 25 H 0.083 0.917 26 H 0.183 0.817 27 H 0.167 0.833 28 H 0.154 0.846 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.023 -6.560 12.649 14.566 hybrid contribution -0.026 0.434 1.913 1.962 sum 2.997 -6.126 14.562 16.080 Atomic orbital electron populations 1.21907 0.97790 1.00505 0.98718 1.17834 0.92377 0.95753 0.87130 0.91975 1.21777 1.48785 0.96479 0.95176 0.92743 1.25804 0.95979 0.95627 1.00568 1.70787 1.35488 1.12430 1.35351 0.83593 0.76253 0.75153 0.75602 1.20690 1.21466 1.21379 1.23149 0.90525 0.89612 0.94699 1.78179 1.22713 1.16484 0.95166 1.46265 1.33380 1.08021 1.17050 1.21453 0.99144 0.88686 0.90955 1.20703 1.02276 1.00525 0.96953 1.21035 0.98292 0.92133 0.99676 1.20539 1.00066 0.99997 0.92483 1.19000 0.98527 0.88013 0.96210 1.20396 1.14406 0.88935 1.00190 1.98271 1.87365 1.17337 1.98343 0.92706 0.93571 0.96202 0.91744 0.81722 0.83276 0.84559 0.83950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 9.08 37.16 0.34 -2.78 15 2 C 0.09 2.32 2.33 -92.92 -0.22 2.11 15 3 H 0.06 1.68 6.26 -51.93 -0.32 1.36 15 4 C -0.58 -16.62 8.28 -34.44 -0.29 -16.90 15 5 H 0.05 1.60 7.83 -52.48 -0.41 1.19 15 6 C 0.03 0.72 5.44 -17.82 -0.10 0.62 15 7 N -0.91 -26.91 13.55 55.43 0.75 -26.15 15 8 Si 1.07 25.49 29.91 -169.99 -5.08 20.41 15 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 12 C 0.18 4.29 5.64 -82.59 -0.47 3.82 15 13 N -0.30 -6.93 12.66 33.53 0.42 -6.50 15 14 N -0.28 -5.29 3.90 -10.67 -0.04 -5.33 15 15 C 0.12 1.68 11.19 -16.62 -0.19 1.49 15 16 C -0.18 -1.89 9.98 -39.91 -0.40 -2.29 15 17 C -0.09 -0.94 10.07 -39.51 -0.40 -1.34 15 18 C -0.11 -1.54 10.11 -39.40 -0.40 -1.94 15 19 C 0.10 1.87 6.81 -84.22 -0.57 1.30 15 20 C -0.20 -4.30 6.73 -39.18 -0.26 -4.56 15 21 Cl -0.04 -0.80 28.57 -51.86 -1.48 -2.28 15 22 H 0.05 1.33 7.65 -51.93 -0.40 0.93 15 23 H 0.05 1.09 8.14 -51.93 -0.42 0.67 15 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 15 25 H 0.27 7.97 6.37 -40.82 -0.26 7.71 15 26 H 0.17 1.78 8.06 -52.48 -0.42 1.36 15 27 H 0.15 0.97 8.06 -52.49 -0.42 0.54 15 28 H 0.14 0.97 8.06 -52.49 -0.42 0.54 15 29 H 0.14 1.69 8.06 -52.48 -0.42 1.27 15 LS Contribution 272.21 15.07 4.10 4.10 Total: -1.00 -32.44 272.21 -7.00 -39.45 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -2.73 Total: -3.21 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -2.95 Total: -20.47 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 1.13 Total: -37.99 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.08 Total: 20.41 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.48 Total: -2.28 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.44 -7.00 -39.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965831.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.759 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds