Wall clock time and date at job start Mon Mar 30 2020 06:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08994 * 109.46699 * 2 1 4 4 C 1.50695 * 109.47209 * 239.99853 * 2 1 3 5 5 H 1.08010 * 119.99435 * 269.08839 * 4 2 1 6 6 C 1.37872 * 120.00409 * 89.08746 * 4 2 1 7 7 N 1.31519 * 119.99775 * 352.54542 * 6 4 2 8 8 Si 1.86799 * 120.00176 * 172.54330 * 6 4 2 9 9 H 1.48506 * 109.46849 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.47238 * 299.99977 * 8 6 4 11 11 H 1.48495 * 109.47215 * 60.00488 * 8 6 4 12 12 C 1.50708 * 109.46818 * 119.99569 * 2 1 3 13 13 N 1.31526 * 125.49124 * 59.69472 * 12 2 1 14 14 N 1.40037 * 108.92134 * 179.87583 * 13 12 2 15 15 C 1.36584 * 132.44556 * 180.09178 * 14 13 12 16 16 C 1.34913 * 120.65215 * 180.31993 * 15 14 13 17 17 C 1.40490 * 120.44378 * 0.02562 * 16 15 14 18 18 C 1.36065 * 119.60353 * 359.97438 * 17 16 15 19 19 C 1.37217 * 107.44517 * 0.38881 * 14 13 12 20 20 C 1.38583 * 125.49181 * 240.00311 * 12 2 1 21 21 Cl 1.73599 * 126.22084 * 359.97438 * 20 12 2 22 22 H 1.09000 * 109.46949 * 57.32863 * 1 2 3 23 23 H 1.09001 * 109.46791 * 177.32569 * 1 2 3 24 24 H 1.08999 * 109.47483 * 297.32820 * 1 2 3 25 25 H 0.96999 * 119.99716 * 354.49942 * 7 6 4 26 26 H 1.08007 * 119.67272 * 0.30308 * 15 14 13 27 27 H 1.08002 * 119.77855 * 180.02562 * 16 15 14 28 28 H 1.07997 * 120.20305 * 180.02562 * 17 16 15 29 29 H 1.08003 * 120.38776 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.2264 -1.7725 -1.1993 6 6 2.2443 -0.0048 -2.3957 7 7 1.8716 1.2537 -2.4794 8 14 3.0609 -0.8361 -3.8557 9 1 3.1729 0.1311 -4.9771 10 1 4.4164 -1.3009 -3.4663 11 1 2.2429 -1.9990 -4.2844 12 6 2.0324 -0.7104 1.2306 13 7 1.7774 -1.9610 1.5479 14 7 2.4170 -2.2624 2.7566 15 6 2.4750 -3.4000 3.5103 16 6 3.1724 -3.4253 4.6650 17 6 3.8510 -2.2793 5.1119 18 6 3.8028 -1.1382 4.3723 19 6 3.0710 -1.1290 3.1697 20 6 2.8324 -0.1493 2.2133 21 17 3.4283 1.4809 2.2440 22 1 -0.3633 0.5548 -0.8651 23 1 -0.3633 -1.0266 -0.0480 24 1 -0.3634 0.4718 0.9129 25 1 1.3767 1.6623 -1.7520 26 1 1.9573 -4.2880 3.1787 27 1 3.2091 -4.3326 5.2496 28 1 4.4084 -2.3040 6.0366 29 1 4.3202 -0.2500 4.7038 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259965831.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:01 Heat of formation + Delta-G solvation = 64.365423 kcal Electronic energy + Delta-G solvation = -15644.403564 eV Core-core repulsion = 12980.101713 eV Total energy + Delta-G solvation = -2664.301850 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.98542 -38.65866 -37.28999 -36.31524 -33.80685 -32.87942 -30.76586 -29.18648 -26.97067 -24.91663 -24.25912 -22.93592 -21.27380 -18.94871 -18.46573 -17.43793 -16.75291 -16.67819 -15.94121 -15.70664 -15.51402 -15.19758 -14.55233 -13.78710 -13.34074 -13.27270 -13.12637 -12.87718 -12.71568 -12.57421 -12.35076 -12.28944 -11.95536 -11.76084 -11.39614 -11.15640 -10.72266 -10.54023 -10.09724 -8.63088 -8.49198 -6.32915 -0.16178 0.08860 0.99410 1.50324 1.56211 1.63769 1.73341 1.79647 2.42610 2.56664 3.17356 3.38185 3.54844 3.90747 3.93670 4.16090 4.27237 4.46723 4.61384 4.68537 4.78348 4.85488 5.07483 5.17791 5.23296 5.28490 5.48010 5.57467 5.92082 6.03278 6.19221 6.55110 6.64237 7.42759 8.76422 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.026011 B = 0.007303 C = 0.006595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.221621 B = 3832.888899 C = 4244.764945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.088 3.912 3 H 0.041 0.959 4 C -0.593 4.593 5 H 0.037 0.963 6 C -0.021 4.021 7 N -0.927 5.927 8 Si 1.110 2.890 9 H -0.278 1.278 10 H -0.278 1.278 11 H -0.272 1.272 12 C 0.149 3.851 13 N -0.347 5.347 14 N -0.282 5.282 15 C 0.084 3.916 16 C -0.143 4.143 17 C -0.054 4.054 18 C -0.136 4.136 19 C 0.107 3.893 20 C -0.247 4.247 21 Cl -0.042 7.042 22 H 0.041 0.959 23 H 0.040 0.960 24 H 0.036 0.964 25 H 0.262 0.738 26 H 0.187 0.813 27 H 0.206 0.794 28 H 0.191 0.809 29 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.550 -8.362 17.705 20.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.067 3.933 3 H 0.059 0.941 4 C -0.631 4.631 5 H 0.055 0.945 6 C -0.220 4.220 7 N -0.563 5.563 8 Si 0.932 3.068 9 H -0.203 1.203 10 H -0.204 1.204 11 H -0.197 1.197 12 C -0.008 4.008 13 N -0.172 5.172 14 N -0.047 5.047 15 C -0.040 4.040 16 C -0.164 4.164 17 C -0.077 4.077 18 C -0.156 4.156 19 C -0.014 4.014 20 C -0.285 4.285 21 Cl -0.014 7.014 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.204 0.796 27 H 0.223 0.777 28 H 0.208 0.792 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.478 -8.999 15.701 18.642 hybrid contribution -0.404 0.968 1.345 1.706 sum 4.074 -8.030 17.046 19.278 Atomic orbital electron populations 1.21706 0.96902 0.99994 0.98898 1.17607 0.93089 0.94717 0.87867 0.94080 1.21965 1.48700 0.95819 0.96655 0.94478 1.27136 0.96083 0.95615 1.03195 1.70884 1.36909 1.13273 1.35283 0.83029 0.76052 0.74850 0.72865 1.20262 1.20391 1.19687 1.22676 0.92524 0.90619 0.94992 1.77952 1.25134 1.16216 0.97872 1.46463 1.32591 1.09506 1.16184 1.22345 1.01358 0.88192 0.92124 1.21511 0.97939 1.02191 0.94787 1.21770 0.95654 0.90271 1.00015 1.20919 1.00699 1.02515 0.91424 1.19454 0.98067 0.86981 0.96873 1.20455 1.16630 0.89943 1.01463 1.98239 1.87414 1.17380 1.98405 0.93997 0.94092 0.94491 0.92818 0.79612 0.77745 0.79231 0.82277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 9.08 71.98 0.65 -5.22 15 2 C 0.09 4.81 2.33 -12.28 -0.03 4.78 15 3 H 0.04 2.38 6.26 -2.39 -0.01 2.36 15 4 C -0.59 -35.35 8.28 25.60 0.21 -35.13 15 5 H 0.04 2.28 7.83 -2.91 -0.02 2.26 15 6 C -0.02 -1.24 5.44 84.65 0.46 -0.78 15 7 N -0.93 -57.20 13.55 21.45 0.29 -56.91 15 8 Si 1.11 52.34 29.91 68.60 2.05 54.39 15 9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 15 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 12 C 0.15 7.46 5.64 42.69 0.24 7.70 15 13 N -0.35 -16.40 12.66 -47.83 -0.61 -17.01 15 14 N -0.28 -10.36 3.90 -187.68 -0.73 -11.10 15 15 C 0.08 2.00 11.19 83.19 0.93 2.93 15 16 C -0.14 -2.03 9.98 22.05 0.22 -1.81 15 17 C -0.05 -0.80 10.07 22.31 0.22 -0.57 15 18 C -0.14 -3.29 10.11 22.39 0.23 -3.06 15 19 C 0.11 3.86 6.81 39.10 0.27 4.13 15 20 C -0.25 -10.87 6.73 22.53 0.15 -10.72 15 21 Cl -0.04 -1.70 28.57 -2.72 -0.08 -1.78 15 22 H 0.04 2.14 7.65 -2.39 -0.02 2.12 15 23 H 0.04 2.03 8.14 -2.39 -0.02 2.02 15 24 H 0.04 1.67 8.14 -2.39 -0.02 1.65 15 25 H 0.26 16.20 6.37 -92.71 -0.59 15.61 15 26 H 0.19 3.44 8.06 -2.91 -0.02 3.41 15 27 H 0.21 0.78 8.06 -2.91 -0.02 0.76 15 28 H 0.19 0.96 8.06 -2.91 -0.02 0.94 15 29 H 0.16 3.27 8.06 -2.91 -0.02 3.24 15 Total: -1.00 -76.85 272.21 5.83 -71.02 By element: Atomic # 1 Polarization: -2.20 SS G_CDS: 1.34 Total: -0.86 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 3.56 Total: -37.75 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -1.05 Total: -85.01 kcal Atomic # 14 Polarization: 52.34 SS G_CDS: 2.05 Total: 54.39 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.08 Total: -1.78 kcal Total: -76.85 5.83 -71.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965831.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.384 kcal (2) G-P(sol) polarization free energy of solvation -76.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds