Wall clock time and date at job start Mon Mar 30 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47072 * 2 1 4 4 C 1.50698 * 109.47199 * 120.00728 * 2 1 3 5 5 H 1.07993 * 120.00269 * 120.00000 * 4 2 1 6 6 C 1.37884 * 119.99811 * 299.99705 * 4 2 1 7 7 N 1.31508 * 120.00213 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99828 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47225 * 89.99842 * 8 6 4 10 10 H 1.48508 * 109.46866 * 210.00049 * 8 6 4 11 11 H 1.48506 * 109.46945 * 329.99588 * 8 6 4 12 12 C 1.50705 * 109.46893 * 240.00322 * 2 1 3 13 13 N 1.31523 * 125.49379 * 300.02543 * 12 2 1 14 14 N 1.40043 * 108.92575 * 180.02562 * 13 12 2 15 15 C 1.36573 * 132.44996 * 180.02562 * 14 13 12 16 16 C 1.34924 * 120.65150 * 179.97438 * 15 14 13 17 17 C 1.40488 * 120.44107 * 359.97438 * 16 15 14 18 18 C 1.36058 * 119.60583 * 0.02562 * 17 16 15 19 19 C 1.37215 * 107.43766 * 359.97438 * 14 13 12 20 20 C 1.38586 * 125.49376 * 120.02759 * 12 2 1 21 21 Cl 1.73603 * 126.21714 * 359.94952 * 20 12 2 22 22 H 1.08999 * 109.47247 * 59.99624 * 1 2 3 23 23 H 1.09004 * 109.47477 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47625 * 299.99417 * 1 2 3 25 25 H 0.97000 * 120.00438 * 179.97438 * 7 6 4 26 26 H 1.07997 * 119.67878 * 359.97327 * 15 14 13 27 27 H 1.07999 * 119.77371 * 179.72724 * 16 15 14 28 28 H 1.07998 * 120.19972 * 179.97438 * 17 16 15 29 29 H 1.08001 * 120.38479 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 2.1380 -0.8593 3.5564 8 14 0.6247 1.2789 2.6542 9 1 -0.8028 0.8725 2.6998 10 1 0.9760 1.9948 3.9070 11 1 0.8471 2.1764 1.4921 12 6 2.0322 -0.7104 -1.2306 13 7 1.7816 -1.9626 -1.5452 14 7 2.4178 -2.2627 -2.7562 15 6 2.4762 -3.4003 -3.5095 16 6 3.1745 -3.4259 -4.6638 17 6 3.8537 -2.2800 -5.1103 18 6 3.8051 -1.1390 -4.3708 19 6 3.0719 -1.1293 -3.1690 20 6 2.8328 -0.1495 -2.2130 21 17 3.4279 1.4810 -2.2442 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.9040 -0.5278 4.4375 26 1 1.9584 -4.2883 -3.1782 27 1 3.2148 -4.3345 -5.2462 28 1 4.4118 -2.3050 -6.0345 29 1 4.3229 -0.2509 -4.7020 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259965835.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:03 Heat of formation + Delta-G solvation = 98.929067 kcal Electronic energy + Delta-G solvation = -15649.887214 eV Core-core repulsion = 12987.084156 eV Total energy + Delta-G solvation = -2662.803058 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.68667 -37.38056 -35.90402 -34.31556 -32.52559 -31.49912 -29.62882 -27.94668 -25.09877 -23.68603 -22.96959 -21.56579 -19.30197 -17.29220 -16.83803 -16.15328 -15.73269 -15.37798 -14.75286 -14.50290 -14.00578 -13.26381 -12.88741 -12.34021 -12.26123 -12.06209 -11.83427 -11.44262 -11.22292 -11.03884 -10.78257 -10.55353 -10.07013 -9.97036 -9.91591 -9.42463 -9.21940 -8.73664 -8.53142 -7.21232 -6.05880 -4.05922 0.88564 1.26222 2.26003 3.06208 3.14937 3.29780 3.40049 3.42057 3.47962 4.41544 4.49921 4.68334 4.88958 4.97041 5.14548 5.25628 5.60571 5.69727 5.72050 6.03725 6.21672 6.32699 6.36397 6.46675 6.63159 6.84870 6.93903 7.08175 7.39989 7.64306 8.04831 8.49834 8.97970 9.52920 11.07093 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.030522 B = 0.007323 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.154478 B = 3822.440790 C = 4324.286760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 H 0.056 0.944 4 C -0.505 4.505 5 H 0.077 0.923 6 C 0.074 3.926 7 N -0.897 5.897 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.263 1.263 12 C 0.180 3.820 13 N -0.291 5.291 14 N -0.280 5.280 15 C 0.125 3.875 16 C -0.181 4.181 17 C -0.087 4.087 18 C -0.112 4.112 19 C 0.103 3.897 20 C -0.201 4.201 21 Cl -0.042 7.042 22 H 0.031 0.969 23 H 0.059 0.941 24 H 0.047 0.953 25 H 0.265 0.735 26 H 0.167 0.833 27 H 0.150 0.850 28 H 0.137 0.863 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 -1.219 -17.456 17.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.054 3.946 3 H 0.074 0.926 4 C -0.543 4.543 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.534 5.534 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.188 1.188 12 C 0.021 3.979 13 N -0.114 5.114 14 N -0.046 5.046 15 C -0.001 4.001 16 C -0.203 4.203 17 C -0.110 4.110 18 C -0.131 4.131 19 C -0.016 4.016 20 C -0.239 4.239 21 Cl -0.014 7.014 22 H 0.050 0.950 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.184 0.816 27 H 0.168 0.832 28 H 0.155 0.845 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.147 -2.142 -16.776 16.951 hybrid contribution -0.032 1.504 -0.023 1.505 sum 1.115 -0.638 -16.799 16.848 Atomic orbital electron populations 1.22124 0.97463 1.01570 0.98918 1.18061 0.92432 0.95735 0.88331 0.92588 1.20763 1.32413 1.13497 0.87628 0.90506 1.24917 0.95650 0.96620 0.95596 1.69873 1.45407 1.40249 0.97908 0.86906 0.80688 0.83818 0.77261 1.20396 1.22292 1.18753 1.22679 0.90949 0.89653 0.94660 1.78245 1.22474 1.16035 0.94628 1.46245 1.33390 1.08083 1.16882 1.21478 0.99101 0.88669 0.90857 1.20726 1.02088 1.00531 0.96953 1.21048 0.98167 0.92124 0.99663 1.20537 1.00090 1.00030 0.92468 1.18994 0.98436 0.87943 0.96199 1.20347 1.14380 0.88898 1.00284 1.98268 1.87421 1.17368 1.98352 0.94972 0.92149 0.93474 0.92515 0.81564 0.83201 0.84519 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.65 37.16 0.32 -2.94 15 2 C 0.08 1.86 2.29 -92.92 -0.21 1.65 15 3 H 0.06 1.39 6.47 -51.93 -0.34 1.05 15 4 C -0.50 -14.59 9.13 -34.44 -0.31 -14.91 15 5 H 0.08 2.47 7.98 -52.49 -0.42 2.05 15 6 C 0.07 2.16 5.45 -17.82 -0.10 2.06 15 7 N -0.90 -27.68 13.96 55.43 0.77 -26.91 15 8 Si 0.88 21.96 24.37 -169.99 -4.14 17.81 15 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 15 10 H -0.30 -7.32 7.11 56.52 0.40 -6.92 15 11 H -0.26 -6.21 6.53 56.52 0.37 -5.84 15 12 C 0.18 4.13 5.60 -82.59 -0.46 3.67 15 13 N -0.29 -6.52 12.66 33.53 0.42 -6.09 15 14 N -0.28 -5.10 3.90 -10.68 -0.04 -5.14 15 15 C 0.13 1.64 11.19 -16.62 -0.19 1.46 15 16 C -0.18 -1.79 9.98 -39.91 -0.40 -2.19 15 17 C -0.09 -0.88 10.07 -39.52 -0.40 -1.28 15 18 C -0.11 -1.46 10.11 -39.40 -0.40 -1.86 15 19 C 0.10 1.82 6.81 -84.22 -0.57 1.25 15 20 C -0.20 -4.07 6.73 -39.19 -0.26 -4.33 15 21 Cl -0.04 -0.76 28.57 -51.86 -1.48 -2.24 15 22 H 0.03 0.64 8.14 -51.93 -0.42 0.21 15 23 H 0.06 1.38 8.14 -51.93 -0.42 0.96 15 24 H 0.05 1.09 3.27 -51.93 -0.17 0.92 15 25 H 0.26 7.64 8.31 -40.82 -0.34 7.30 15 26 H 0.17 1.75 8.06 -52.49 -0.42 1.33 15 27 H 0.15 0.92 8.06 -52.49 -0.42 0.50 15 28 H 0.14 0.90 8.06 -52.49 -0.42 0.48 15 29 H 0.14 1.58 8.06 -52.49 -0.42 1.16 15 LS Contribution 264.53 15.07 3.99 3.99 Total: -1.00 -33.00 264.53 -6.11 -39.11 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: -2.64 Total: -3.10 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: -2.98 Total: -17.42 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 1.16 Total: -38.15 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.81 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.48 Total: -2.24 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -33.00 -6.11 -39.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965835.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.037 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds