Wall clock time and date at job start Mon Mar 30 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47072 * 2 1 4 4 C 1.50698 * 109.47199 * 120.00728 * 2 1 3 5 5 H 1.07993 * 120.00269 * 120.00000 * 4 2 1 6 6 C 1.37884 * 119.99811 * 299.99705 * 4 2 1 7 7 N 1.31508 * 120.00213 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 119.99828 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47225 * 89.99842 * 8 6 4 10 10 H 1.48508 * 109.46866 * 210.00049 * 8 6 4 11 11 H 1.48506 * 109.46945 * 329.99588 * 8 6 4 12 12 C 1.50705 * 109.46893 * 240.00322 * 2 1 3 13 13 N 1.31523 * 125.49379 * 300.02543 * 12 2 1 14 14 N 1.40043 * 108.92575 * 180.02562 * 13 12 2 15 15 C 1.36573 * 132.44996 * 180.02562 * 14 13 12 16 16 C 1.34924 * 120.65150 * 179.97438 * 15 14 13 17 17 C 1.40488 * 120.44107 * 359.97438 * 16 15 14 18 18 C 1.36058 * 119.60583 * 0.02562 * 17 16 15 19 19 C 1.37215 * 107.43766 * 359.97438 * 14 13 12 20 20 C 1.38586 * 125.49376 * 120.02759 * 12 2 1 21 21 Cl 1.73603 * 126.21714 * 359.94952 * 20 12 2 22 22 H 1.08999 * 109.47247 * 59.99624 * 1 2 3 23 23 H 1.09004 * 109.47477 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47625 * 299.99417 * 1 2 3 25 25 H 0.97000 * 120.00438 * 179.97438 * 7 6 4 26 26 H 1.07997 * 119.67878 * 359.97327 * 15 14 13 27 27 H 1.07999 * 119.77371 * 179.72724 * 16 15 14 28 28 H 1.07998 * 120.19972 * 179.97438 * 17 16 15 29 29 H 1.08001 * 120.38479 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 2.1380 -0.8593 3.5564 8 14 0.6247 1.2789 2.6542 9 1 -0.8028 0.8725 2.6998 10 1 0.9760 1.9948 3.9070 11 1 0.8471 2.1764 1.4921 12 6 2.0322 -0.7104 -1.2306 13 7 1.7816 -1.9626 -1.5452 14 7 2.4178 -2.2627 -2.7562 15 6 2.4762 -3.4003 -3.5095 16 6 3.1745 -3.4259 -4.6638 17 6 3.8537 -2.2800 -5.1103 18 6 3.8051 -1.1390 -4.3708 19 6 3.0719 -1.1293 -3.1690 20 6 2.8328 -0.1495 -2.2130 21 17 3.4279 1.4810 -2.2442 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.9040 -0.5278 4.4375 26 1 1.9584 -4.2883 -3.1782 27 1 3.2148 -4.3345 -5.2462 28 1 4.4118 -2.3050 -6.0345 29 1 4.3229 -0.2509 -4.7020 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259965835.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:02 Heat of formation + Delta-G solvation = 76.650647 kcal Electronic energy + Delta-G solvation = -15650.853279 eV Core-core repulsion = 12987.084156 eV Total energy + Delta-G solvation = -2663.769123 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.97525 -38.64929 -37.26667 -36.11447 -33.89677 -33.31055 -31.04087 -29.19966 -27.17663 -25.09367 -24.23467 -22.93203 -20.92005 -18.93000 -18.35873 -17.52681 -17.06462 -16.66485 -16.35790 -15.76771 -15.33887 -14.95935 -14.82750 -14.15381 -13.64975 -13.28567 -13.07105 -12.97612 -12.83390 -12.53996 -12.30896 -12.20877 -11.92854 -11.54296 -11.32969 -11.21550 -11.05596 -10.75682 -10.15071 -8.47452 -8.31105 -6.36463 -0.13696 0.11596 1.00604 1.31410 1.37543 1.48591 1.60292 1.74580 2.31931 2.45355 3.02970 3.39350 3.53746 3.91631 3.96311 4.18259 4.22568 4.45857 4.54647 4.66820 4.76046 4.81098 5.00347 5.10495 5.25756 5.31670 5.44652 5.53665 5.60140 5.98012 6.23468 6.59070 6.67099 7.26108 8.86164 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.030522 B = 0.007323 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.154478 B = 3822.440790 C = 4324.286760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.077 3.923 3 H 0.055 0.945 4 C -0.508 4.508 5 H 0.023 0.977 6 C 0.017 3.983 7 N -0.947 5.947 8 Si 0.948 3.052 9 H -0.261 1.261 10 H -0.292 1.292 11 H -0.242 1.242 12 C 0.148 3.852 13 N -0.344 5.344 14 N -0.282 5.282 15 C 0.083 3.917 16 C -0.143 4.143 17 C -0.056 4.056 18 C -0.133 4.133 19 C 0.107 3.893 20 C -0.241 4.241 21 Cl -0.036 7.036 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.045 0.955 25 H 0.268 0.732 26 H 0.184 0.816 27 H 0.204 0.796 28 H 0.190 0.810 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.916 -1.291 -21.272 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.056 3.944 3 H 0.072 0.928 4 C -0.546 4.546 5 H 0.042 0.958 6 C -0.180 4.180 7 N -0.587 5.587 8 Si 0.773 3.227 9 H -0.187 1.187 10 H -0.220 1.220 11 H -0.165 1.165 12 C -0.009 4.009 13 N -0.168 5.168 14 N -0.048 5.048 15 C -0.042 4.042 16 C -0.164 4.164 17 C -0.079 4.079 18 C -0.153 4.153 19 C -0.014 4.014 20 C -0.279 4.279 21 Cl -0.008 7.008 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.201 0.799 27 H 0.221 0.779 28 H 0.207 0.793 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.298 -2.221 -20.609 20.769 hybrid contribution 0.100 1.238 0.854 1.508 sum 1.398 -0.983 -19.755 19.829 Atomic orbital electron populations 1.22005 0.95994 1.01295 1.00090 1.17847 0.93638 0.95217 0.87675 0.92751 1.20888 1.31556 1.12101 0.90071 0.95827 1.25825 0.97141 1.00166 0.94895 1.70029 1.47441 1.42536 0.98647 0.85864 0.79184 0.79750 0.77906 1.18688 1.21977 1.16519 1.22336 0.93009 0.90518 0.95011 1.78024 1.25131 1.16197 0.97436 1.46440 1.32748 1.09601 1.16006 1.22313 1.01471 0.88226 0.92145 1.21503 0.97859 1.02228 0.94762 1.21766 0.95703 0.90321 1.00086 1.20935 1.00513 1.02493 0.91323 1.19485 0.98033 0.86929 0.96963 1.20388 1.16153 0.90102 1.01213 1.98239 1.87383 1.16828 1.98387 0.92158 0.93230 0.93619 0.92258 0.79870 0.77912 0.79257 0.81966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.26 8.65 71.98 0.62 -5.64 15 2 C 0.08 3.95 2.29 -12.29 -0.03 3.92 15 3 H 0.05 2.75 6.47 -2.39 -0.02 2.74 15 4 C -0.51 -31.11 9.13 25.60 0.23 -30.87 15 5 H 0.02 1.64 7.98 -2.91 -0.02 1.61 15 6 C 0.02 1.03 5.45 84.66 0.46 1.49 15 7 N -0.95 -61.20 13.96 21.45 0.30 -60.91 15 8 Si 0.95 45.89 24.37 68.60 1.67 47.57 15 9 H -0.26 -11.92 6.87 99.48 0.68 -11.24 15 10 H -0.29 -13.92 7.11 99.48 0.71 -13.21 15 11 H -0.24 -10.81 6.53 99.48 0.65 -10.16 15 12 C 0.15 7.12 5.60 42.69 0.24 7.36 15 13 N -0.34 -16.08 12.66 -47.84 -0.61 -16.69 15 14 N -0.28 -10.22 3.90 -187.69 -0.73 -10.95 15 15 C 0.08 1.97 11.19 83.19 0.93 2.90 15 16 C -0.14 -2.00 9.98 22.06 0.22 -1.78 15 17 C -0.06 -0.78 10.07 22.31 0.22 -0.56 15 18 C -0.13 -3.03 10.11 22.39 0.23 -2.80 15 19 C 0.11 3.68 6.81 39.10 0.27 3.94 15 20 C -0.24 -9.93 6.73 22.53 0.15 -9.78 15 21 Cl -0.04 -1.32 28.57 -2.72 -0.08 -1.40 15 22 H 0.06 2.38 8.14 -2.39 -0.02 2.36 15 23 H 0.05 2.33 8.14 -2.38 -0.02 2.31 15 24 H 0.05 2.07 3.27 -2.39 -0.01 2.06 15 25 H 0.27 16.10 8.31 -92.71 -0.77 15.33 15 26 H 0.18 3.52 8.06 -2.91 -0.02 3.50 15 27 H 0.20 0.82 8.06 -2.91 -0.02 0.79 15 28 H 0.19 0.84 8.06 -2.91 -0.02 0.82 15 29 H 0.16 3.02 8.06 -2.91 -0.02 2.99 15 Total: -1.00 -79.47 264.53 5.19 -74.28 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: 1.09 Total: -0.09 kcal Atomic # 6 Polarization: -35.37 SS G_CDS: 3.55 Total: -31.82 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -1.04 Total: -88.54 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.67 Total: 47.57 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -79.47 5.19 -74.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965835.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.929 kcal (2) G-P(sol) polarization free energy of solvation -79.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds