Wall clock time and date at job start Mon Mar 30 2020 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47141 * 2 1 4 4 C 1.50694 * 109.47265 * 240.00382 * 2 1 3 5 5 H 1.08002 * 120.00179 * 239.99421 * 4 2 1 6 6 C 1.37879 * 120.00472 * 59.99739 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 C 1.50701 * 109.47433 * 120.00046 * 2 1 3 13 13 C 1.40835 * 119.68364 * 59.72837 * 12 2 1 14 14 C 1.35886 * 119.78921 * 179.69713 * 13 12 2 15 15 C 1.40936 * 119.17864 * 0.56694 * 14 13 12 16 16 C 1.38059 * 133.73040 * 179.72392 * 15 14 13 17 17 Cl 1.73602 * 126.27843 * 359.97438 * 16 15 14 18 18 N 1.33413 * 107.44664 * 179.97438 * 16 15 14 19 19 C 1.30953 * 109.88361 * 0.02562 * 18 16 15 20 20 N 1.34988 * 109.39272 * 0.02562 * 19 18 16 21 21 C 1.34654 * 119.68322 * 240.00597 * 12 2 1 22 22 H 1.08993 * 109.47298 * 299.99300 * 1 2 3 23 23 H 1.09001 * 109.47411 * 60.00233 * 1 2 3 24 24 H 1.09002 * 109.46412 * 180.02562 * 1 2 3 25 25 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 26 26 H 1.08004 * 120.10518 * 0.02562 * 13 12 2 27 27 H 1.07998 * 120.40638 * 180.24717 * 14 13 12 28 28 H 1.08003 * 125.30517 * 179.97438 * 19 18 16 29 29 H 1.07997 * 119.72865 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5883 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6033 8 14 2.3226 -1.1193 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8075 -1.1187 -4.0078 11 1 1.8282 -2.5196 -4.0082 12 6 2.0324 -0.7104 1.2304 13 6 1.6834 -2.0571 1.4496 14 6 2.1403 -2.7016 2.5552 15 6 2.9496 -2.0022 3.4729 16 6 3.5581 -2.3456 4.6637 17 17 3.4880 -3.8950 5.4436 18 7 4.2097 -1.2684 5.1052 19 6 4.0469 -0.2751 4.2675 20 7 3.2722 -0.6789 3.2385 21 6 2.8061 -0.0498 2.1126 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 0.7087 1.1613 -3.4844 26 1 1.0590 -2.5776 0.7385 27 1 1.8821 -3.7354 2.7311 28 1 4.4665 0.7135 4.3825 29 1 3.0614 0.9839 1.9321 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259972075.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:15 Heat of formation + Delta-G solvation = 68.759639 kcal Electronic energy + Delta-G solvation = -15473.108138 eV Core-core repulsion = 12808.996835 eV Total energy + Delta-G solvation = -2664.111303 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.50619 -37.73774 -36.36994 -34.29327 -32.89057 -31.58765 -28.79789 -27.59608 -25.32837 -23.35707 -22.76451 -21.53163 -20.11889 -17.67292 -16.57542 -16.03965 -15.66791 -15.40757 -14.81784 -14.47033 -13.80313 -13.73931 -12.90796 -12.41182 -12.14168 -11.74434 -11.39687 -11.31059 -11.21993 -11.03030 -10.82239 -10.51977 -10.32967 -10.10101 -10.08951 -9.82221 -9.31519 -8.59107 -8.53038 -7.13635 -6.19972 -4.28693 1.17942 1.61914 2.08086 3.02173 3.11304 3.20889 3.26441 3.29150 3.81488 4.28834 4.75555 4.96923 5.03413 5.09270 5.16071 5.47239 5.51567 6.06547 6.17782 6.39001 6.48113 6.57088 6.72904 6.85768 6.92343 7.03594 7.42668 7.47397 7.67081 7.86987 7.88690 8.13511 8.73084 9.37760 10.85461 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.036737 B = 0.005413 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.998678 B = 5171.765843 C = 5412.789779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.080 3.920 3 H 0.040 0.960 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.275 1.275 12 C -0.034 4.034 13 C -0.074 4.074 14 C -0.104 4.104 15 C 0.034 3.966 16 C 0.027 3.973 17 Cl -0.017 7.017 18 N -0.450 5.450 19 C 0.136 3.864 20 N -0.348 5.348 21 C 0.007 3.993 22 H 0.011 0.989 23 H 0.090 0.910 24 H 0.031 0.969 25 H 0.264 0.736 26 H 0.143 0.857 27 H 0.142 0.858 28 H 0.213 0.787 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.612 -3.404 8.933 9.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.061 3.939 3 H 0.058 0.942 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.201 1.201 12 C -0.036 4.036 13 C -0.096 4.096 14 C -0.123 4.123 15 C -0.080 4.080 16 C -0.134 4.134 17 Cl 0.011 6.989 18 N -0.166 5.166 19 C -0.139 4.139 20 N -0.017 5.017 21 C -0.112 4.112 22 H 0.030 0.970 23 H 0.108 0.892 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.161 0.839 27 H 0.160 0.840 28 H 0.230 0.770 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.059 -3.197 9.617 10.342 hybrid contribution -0.021 -0.543 -1.485 1.581 sum 2.038 -3.740 8.132 9.180 Atomic orbital electron populations 1.21805 0.96962 0.99693 1.00716 1.17871 0.93248 0.95409 0.87374 0.94220 1.20968 1.32006 1.12881 0.89597 0.92318 1.24932 0.94759 0.94898 0.99029 1.69857 1.36061 1.22614 1.23943 0.86591 0.79307 0.79810 0.81988 1.21156 1.20171 1.20080 1.20483 0.93110 0.94130 0.95920 1.21281 0.98049 0.94325 0.95926 1.20467 0.98084 1.00150 0.93642 1.18989 1.05191 0.85600 0.98198 1.20376 1.08241 0.90206 0.94580 1.98311 1.97667 1.22221 1.80688 1.69525 1.20739 0.98368 1.28003 1.24531 1.02516 1.00729 0.86132 1.42829 1.32330 1.10034 1.16499 1.21633 1.03217 0.99488 0.86812 0.97033 0.89153 0.94953 0.92598 0.83941 0.84047 0.77029 0.81759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.78 37.16 0.33 -2.54 15 2 C 0.08 1.76 2.46 -92.93 -0.23 1.53 15 3 H 0.04 0.92 7.80 -51.93 -0.41 0.52 15 4 C -0.52 -12.71 8.25 -34.44 -0.28 -13.00 15 5 H 0.06 1.45 7.61 -52.49 -0.40 1.05 15 6 C 0.07 1.68 5.30 -17.82 -0.09 1.58 15 7 N -0.89 -23.24 11.32 55.43 0.63 -22.61 15 8 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 15 9 H -0.29 -6.34 7.11 56.52 0.40 -5.94 15 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 15 12 C -0.03 -0.64 4.69 -104.91 -0.49 -1.13 15 13 C -0.07 -1.30 8.74 -39.44 -0.34 -1.64 15 14 C -0.10 -1.67 10.11 -39.40 -0.40 -2.07 15 15 C 0.03 0.58 6.80 -84.03 -0.57 0.01 15 16 C 0.03 0.47 7.84 -16.93 -0.13 0.33 15 17 Cl -0.02 -0.25 29.32 -51.86 -1.52 -1.77 15 18 N -0.45 -7.74 11.20 -11.10 -0.12 -7.86 15 19 C 0.14 2.06 12.75 -90.05 -1.15 0.91 15 20 N -0.35 -5.80 2.95 -62.38 -0.18 -5.99 15 21 C 0.01 0.12 10.58 -16.45 -0.17 -0.06 15 22 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 15 23 H 0.09 2.16 6.07 -51.93 -0.32 1.84 15 24 H 0.03 0.65 7.38 -51.93 -0.38 0.27 15 25 H 0.26 6.67 8.31 -40.82 -0.34 6.33 15 26 H 0.14 2.40 7.59 -52.48 -0.40 2.00 15 27 H 0.14 1.89 8.06 -52.49 -0.42 1.47 15 28 H 0.21 2.29 8.06 -52.48 -0.42 1.87 15 29 H 0.17 2.41 7.86 -52.49 -0.41 1.99 15 LS Contribution 268.81 15.07 4.05 4.05 Total: -1.00 -27.19 268.81 -8.43 -35.62 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -2.72 Total: -0.21 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -3.54 Total: -16.08 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.32 Total: -36.47 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.52 Total: -1.77 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.19 -8.43 -35.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259972075.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.382 kcal (2) G-P(sol) polarization free energy of solvation -27.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds