Wall clock time and date at job start Mon Mar 30 2020 06:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 5 5 H 1.08002 * 119.99362 * 119.99715 * 4 2 1 6 6 C 1.37867 * 120.00258 * 300.00370 * 4 2 1 7 7 N 1.31511 * 120.00203 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00057 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47094 * 89.99954 * 8 6 4 10 10 H 1.48499 * 109.46907 * 209.99714 * 8 6 4 11 11 H 1.48495 * 109.46933 * 330.00015 * 8 6 4 12 12 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 13 13 C 1.40844 * 119.68149 * 299.72644 * 12 2 1 14 14 C 1.35881 * 119.78907 * 179.69763 * 13 12 2 15 15 C 1.40938 * 119.17864 * 0.60858 * 14 13 12 16 16 C 1.38070 * 133.72893 * 179.68406 * 15 14 13 17 17 Cl 1.73601 * 126.27807 * 359.97438 * 16 15 14 18 18 N 1.33414 * 107.44226 * 179.97438 * 16 15 14 19 19 C 1.30959 * 109.88573 * 359.97438 * 18 16 15 20 20 N 1.34986 * 109.39525 * 0.02562 * 19 18 16 21 21 C 1.34650 * 119.68814 * 119.99825 * 12 2 1 22 22 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 25 25 H 0.97006 * 120.00645 * 180.02562 * 7 6 4 26 26 H 1.08006 * 120.10646 * 359.97438 * 13 12 2 27 27 H 1.08001 * 120.40866 * 180.28822 * 14 13 12 28 28 H 1.07996 * 125.30386 * 179.97438 * 19 18 16 29 29 H 1.07996 * 119.72442 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4826 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1205 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7118 12 6 2.0324 -0.7103 -1.2305 13 6 1.6928 -2.0604 -1.4440 14 6 2.1395 -2.7012 -2.5558 15 6 2.9495 -2.0020 -3.4731 16 6 3.5579 -2.3454 -4.6640 17 17 3.4880 -3.8948 -5.4439 18 7 4.2094 -1.2681 -5.1055 19 6 4.0465 -0.2747 -4.2678 20 7 3.2728 -0.6789 -3.2381 21 6 2.8061 -0.0497 -2.1127 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.7095 1.1617 3.4844 26 1 1.0757 -2.5835 -0.7284 27 1 1.8813 -3.7350 -2.7318 28 1 4.4666 0.7136 -4.3824 29 1 3.0608 0.9842 -1.9324 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259972076.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:16 Heat of formation + Delta-G solvation = 56.972685 kcal Electronic energy + Delta-G solvation = -15473.894008 eV Core-core repulsion = 12809.271585 eV Total energy + Delta-G solvation = -2664.622423 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.77197 -39.12093 -37.57870 -35.94801 -34.19074 -33.26823 -30.28947 -28.89707 -27.20175 -24.76099 -24.11295 -22.80540 -21.67652 -19.06012 -18.09525 -17.59605 -16.98695 -16.90115 -16.37296 -15.75752 -15.21887 -14.93337 -14.65253 -13.81515 -13.67070 -13.35660 -12.97077 -12.84907 -12.65384 -12.43868 -12.37256 -12.14747 -12.06020 -11.58122 -11.35787 -11.30617 -11.05836 -10.47262 -9.99238 -8.40949 -8.10492 -6.24266 -0.11185 0.30376 0.84598 1.42986 1.46609 1.54238 1.77623 1.86796 2.40126 2.53413 3.18579 3.52368 3.73162 3.83326 3.90861 4.18526 4.21257 4.71709 4.78804 4.94082 5.08287 5.11967 5.20227 5.28786 5.37541 5.58703 5.68075 5.90073 6.04267 6.19159 6.31002 6.63673 6.83497 7.44520 8.93184 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.036748 B = 0.005413 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.765095 B = 5171.204565 C = 5413.105791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.083 3.917 3 H 0.021 0.979 4 C -0.522 4.522 5 H 0.054 0.946 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.948 3.052 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.269 1.269 12 C -0.056 4.056 13 C -0.089 4.089 14 C -0.093 4.093 15 C 0.012 3.988 16 C 0.019 3.981 17 Cl -0.001 7.001 18 N -0.474 5.474 19 C 0.152 3.848 20 N -0.357 5.357 21 C 0.020 3.980 22 H 0.027 0.973 23 H 0.036 0.964 24 H 0.062 0.938 25 H 0.262 0.738 26 H 0.142 0.858 27 H 0.166 0.834 28 H 0.254 0.746 29 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 -3.824 -9.859 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.064 3.936 3 H 0.039 0.961 4 C -0.560 4.560 5 H 0.072 0.928 6 C -0.178 4.178 7 N -0.552 5.552 8 Si 0.774 3.226 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.194 1.194 12 C -0.059 4.059 13 C -0.110 4.110 14 C -0.112 4.112 15 C -0.101 4.101 16 C -0.142 4.142 17 Cl 0.027 6.973 18 N -0.190 5.190 19 C -0.123 4.123 20 N -0.026 5.026 21 C -0.099 4.099 22 H 0.046 0.954 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.159 0.841 27 H 0.183 0.817 28 H 0.270 0.730 29 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.802 -3.650 -10.554 11.514 hybrid contribution -0.188 -0.397 1.641 1.698 sum 2.615 -4.047 -8.914 10.132 Atomic orbital electron populations 1.21653 0.96849 0.99726 1.00089 1.17673 0.93405 0.94408 0.88152 0.96085 1.21295 1.31323 1.12589 0.90832 0.92814 1.25575 0.95145 0.95586 1.01459 1.69975 1.37247 1.23806 1.24132 0.85708 0.77970 0.79302 0.79612 1.20581 1.21062 1.19352 1.20178 0.95106 0.94883 0.95706 1.21236 0.99082 0.94008 0.96688 1.20667 0.96986 1.01066 0.92490 1.19256 1.05887 0.86227 0.98706 1.20660 1.07904 0.90966 0.94659 1.98313 1.97588 1.21056 1.80357 1.69588 1.21585 0.98946 1.28852 1.25463 1.00532 1.01698 0.84559 1.42946 1.32900 1.10038 1.16749 1.21752 1.01722 1.00090 0.86319 0.95363 0.94538 0.91909 0.92833 0.84058 0.81697 0.73029 0.79755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.37 8.79 71.98 0.63 -4.74 15 2 C 0.08 3.63 2.46 -12.29 -0.03 3.60 15 3 H 0.02 0.99 7.80 -2.39 -0.02 0.97 15 4 C -0.52 -25.75 8.24 25.60 0.21 -25.54 15 5 H 0.05 2.65 7.60 -2.91 -0.02 2.63 15 6 C 0.02 1.11 5.30 84.65 0.45 1.56 15 7 N -0.91 -48.39 11.32 21.44 0.24 -48.15 15 8 Si 0.95 40.70 29.54 68.60 2.03 42.73 15 9 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 10 H -0.28 -12.13 7.11 99.48 0.71 -11.43 15 11 H -0.27 -11.27 7.11 99.48 0.71 -10.57 15 12 C -0.06 -2.07 4.69 -20.05 -0.09 -2.17 15 13 C -0.09 -3.02 8.72 22.36 0.20 -2.82 15 14 C -0.09 -2.83 10.11 22.38 0.23 -2.60 15 15 C 0.01 0.38 6.80 38.76 0.26 0.65 15 16 C 0.02 0.60 7.84 84.41 0.66 1.26 15 17 Cl 0.00 -0.03 29.32 -2.72 -0.08 -0.11 15 18 N -0.47 -15.11 11.20 -189.04 -2.12 -17.23 15 19 C 0.15 4.16 12.75 180.15 2.30 6.46 15 20 N -0.36 -11.07 2.95 -351.27 -1.04 -12.11 15 21 C 0.02 0.63 10.58 83.04 0.88 1.50 15 22 H 0.03 1.07 8.14 -2.39 -0.02 1.05 15 23 H 0.04 1.48 7.41 -2.39 -0.02 1.46 15 24 H 0.06 3.04 6.07 -2.39 -0.01 3.03 15 25 H 0.26 13.37 8.31 -92.70 -0.77 12.60 15 26 H 0.14 4.72 7.62 -2.91 -0.02 4.69 15 27 H 0.17 4.07 8.06 -2.91 -0.02 4.04 15 28 H 0.25 4.39 8.06 -2.91 -0.02 4.37 15 29 H 0.19 5.01 7.86 -2.91 -0.02 4.98 15 Total: -1.00 -56.99 268.85 5.89 -51.10 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.17 Total: 6.59 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: 5.69 Total: -22.83 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -2.91 Total: -77.48 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.11 kcal Total: -56.99 5.89 -51.10 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259972076.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.073 kcal (2) G-P(sol) polarization free energy of solvation -56.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds