Wall clock time and date at job start Mon Mar 30 2020 06:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47144 * 2 1 4 4 N 1.30102 * 124.97898 * 270.29476 * 3 2 1 5 5 C 1.35898 * 109.73386 * 180.16032 * 4 3 2 6 6 C 1.39677 * 133.48175 * 179.88284 * 5 4 3 7 7 C 1.37821 * 119.76685 * 179.68374 * 6 5 4 8 8 Cl 1.73606 * 119.75690 * 179.97438 * 7 6 5 9 9 C 1.38830 * 120.48822 * 359.97262 * 7 6 5 10 10 C 1.37941 * 120.42657 * 0.02843 * 9 7 6 11 11 C 1.38718 * 119.85022 * 359.97438 * 10 9 7 12 12 N 1.36532 * 124.98371 * 89.99910 * 3 2 1 13 13 C 1.37313 * 126.39601 * 359.97438 * 12 3 2 14 14 H 1.07997 * 120.00109 * 33.74274 * 13 12 3 15 15 C 1.38911 * 119.99693 * 213.74697 * 13 12 3 16 16 N 1.31384 * 119.99963 * 20.24294 * 15 13 12 17 17 Si 1.86794 * 119.99705 * 200.24289 * 15 13 12 18 18 H 1.48500 * 109.47314 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46643 * 120.00186 * 17 15 13 20 20 H 1.48499 * 109.47295 * 239.99621 * 17 15 13 21 21 H 1.09003 * 109.46720 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46769 * 299.99979 * 1 2 3 23 23 H 1.08996 * 109.47137 * 60.00152 * 1 2 3 24 24 H 1.08999 * 109.47493 * 239.99846 * 2 1 3 25 25 H 1.08999 * 109.47551 * 120.00118 * 2 1 3 26 26 H 1.07997 * 120.11701 * 359.66396 * 6 5 4 27 27 H 1.08005 * 119.78907 * 180.02562 * 9 7 6 28 28 H 1.08003 * 120.07695 * 180.02562 * 10 9 7 29 29 H 0.97003 * 119.99943 * 178.12145 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2758 2.1258 -1.0660 5 6 2.7179 3.3602 -0.7087 6 6 3.1158 4.4857 -1.4338 7 6 3.5178 5.6227 -0.7665 8 17 4.0129 7.0213 -1.6680 9 6 3.5296 5.6577 0.6213 10 6 3.1396 4.5543 1.3514 11 6 2.7321 3.4016 0.6960 12 7 2.2932 2.1588 1.1186 13 6 2.1466 1.7456 2.4199 14 1 2.3328 0.7150 2.6834 15 6 1.7587 2.6533 3.3972 16 7 1.1570 3.7700 3.0550 17 14 2.0925 2.2862 5.1981 18 1 2.7774 0.9739 5.3171 19 1 2.9585 3.3495 5.7677 20 1 0.8074 2.2436 5.9411 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8899 26 1 3.1088 4.4651 -2.5135 27 1 3.8464 6.5548 1.1327 28 1 3.1506 4.5879 2.4309 29 1 0.8617 4.3912 3.7390 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259973472.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:11 Heat of formation + Delta-G solvation = 46.509794 kcal Electronic energy + Delta-G solvation = -15909.412085 eV Core-core repulsion = 13244.335956 eV Total energy + Delta-G solvation = -2665.076128 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.92414 -36.85795 -35.34718 -34.30089 -32.59638 -31.34223 -29.23795 -27.72617 -25.32388 -23.70278 -21.35485 -20.97806 -19.40271 -17.81771 -16.49610 -15.58489 -15.00795 -14.73802 -14.22871 -13.68091 -13.31364 -13.17481 -12.94027 -12.33222 -12.15847 -11.82143 -11.58864 -11.45417 -11.21509 -10.94656 -10.86762 -10.62060 -10.49343 -10.28497 -10.02268 -9.63616 -8.97587 -8.81227 -7.31033 -7.08771 -6.80633 -4.62150 1.92563 2.42357 2.86791 2.89565 2.96106 3.00675 3.68000 3.88640 4.45410 4.58659 4.85961 5.16513 5.66943 5.73298 5.84579 5.91068 6.03244 6.28167 6.35601 6.41799 6.55907 6.60880 6.66619 6.76238 6.89774 7.04962 7.15859 7.39561 7.61126 7.83978 8.02303 8.51109 9.08118 9.25861 10.09583 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.008962 C = 0.006482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.818838 B = 3123.658100 C = 4318.415180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 C 0.219 3.781 4 N -0.525 5.525 5 C 0.036 3.964 6 C -0.074 4.074 7 C -0.050 4.050 8 Cl -0.104 7.104 9 C -0.149 4.149 10 C -0.028 4.028 11 C 0.046 3.954 12 N -0.281 5.281 13 C -0.359 4.359 14 H 0.112 0.888 15 C 0.055 3.945 16 N -0.819 5.819 17 Si 0.928 3.072 18 H -0.261 1.261 19 H -0.271 1.271 20 H -0.274 1.274 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.125 0.875 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.627 -0.858 -0.565 1.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 C -0.042 4.042 4 N -0.248 5.248 5 C -0.089 4.089 6 C -0.095 4.095 7 C -0.079 4.079 8 Cl -0.076 7.076 9 C -0.171 4.171 10 C -0.049 4.049 11 C -0.071 4.071 12 N 0.049 4.951 13 C -0.487 4.487 14 H 0.129 0.871 15 C -0.159 4.159 16 N -0.448 5.448 17 Si 0.752 3.248 18 H -0.185 1.185 19 H -0.196 1.196 20 H -0.199 1.199 21 H 0.073 0.927 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.436 -0.924 -1.203 2.089 hybrid contribution 0.064 0.483 1.695 1.764 sum 1.500 -0.441 0.493 1.639 Atomic orbital electron populations 1.21647 0.94626 1.00896 1.02683 1.19760 0.96020 0.88173 1.02579 1.23294 1.02557 0.96594 0.81801 1.70164 1.23478 1.03154 1.27967 1.18610 1.06227 0.93364 0.90708 1.19606 1.01439 0.89876 0.98557 1.20148 1.08200 0.88076 0.91485 1.98278 1.90677 1.42722 1.75879 1.20406 1.06781 0.98702 0.91233 1.19966 0.95865 0.89591 0.99435 1.18704 1.05010 0.89856 0.93516 1.41214 1.39570 1.08411 1.05887 1.19710 1.50194 0.98196 0.80632 0.87085 1.25581 0.93416 0.95187 1.01671 1.70045 1.28707 1.09996 1.36043 0.85854 0.78909 0.79639 0.80405 1.18499 1.19606 1.19922 0.92747 0.92064 0.92649 0.90267 0.90565 0.86253 0.86341 0.85741 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.89 37.16 0.37 -1.98 15 2 C -0.03 -0.48 6.21 -27.88 -0.17 -0.65 15 3 C 0.22 5.13 7.08 -154.37 -1.09 4.04 15 4 N -0.53 -12.93 11.27 -8.11 -0.09 -13.02 15 5 C 0.04 0.88 7.22 -84.66 -0.61 0.27 15 6 C -0.07 -1.62 9.87 -39.20 -0.39 -2.01 15 7 C -0.05 -1.02 6.31 -39.52 -0.25 -1.27 15 8 Cl -0.10 -1.78 28.94 -51.86 -1.50 -3.28 15 9 C -0.15 -3.11 9.81 -39.47 -0.39 -3.50 15 10 C -0.03 -0.66 8.57 -39.51 -0.34 -1.00 15 11 C 0.05 1.16 6.16 -83.85 -0.52 0.65 15 12 N -0.28 -7.08 2.86 -56.64 -0.16 -7.25 15 13 C -0.36 -8.70 9.48 -14.85 -0.14 -8.84 15 14 H 0.11 2.51 7.36 -52.49 -0.39 2.12 15 15 C 0.05 1.28 4.53 -17.49 -0.08 1.20 15 16 N -0.82 -20.33 10.61 55.49 0.59 -19.74 15 17 Si 0.93 17.74 29.60 -169.99 -5.03 12.71 15 18 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 20 H -0.27 -5.21 7.11 56.52 0.40 -4.80 15 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 22 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.08 1.30 7.39 -51.93 -0.38 0.92 15 26 H 0.12 2.39 8.06 -52.49 -0.42 1.96 15 27 H 0.12 2.15 8.06 -52.48 -0.42 1.73 15 28 H 0.12 2.95 6.26 -52.48 -0.33 2.62 15 29 H 0.28 6.48 8.31 -40.82 -0.34 6.14 15 LS Contribution 267.73 15.07 4.03 4.03 Total: -1.00 -27.23 267.73 -8.54 -35.77 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -2.77 Total: 3.87 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -3.61 Total: -13.10 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.34 Total: -40.01 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -1.50 Total: -3.28 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.23 -8.54 -35.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973472.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.279 kcal (2) G-P(sol) polarization free energy of solvation -27.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds