Wall clock time and date at job start Mon Mar 30 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48496 * 109.47458 * 270.00236 * 3 2 1 5 5 H 1.48501 * 109.46823 * 30.00329 * 3 2 1 6 6 H 1.48500 * 109.47201 * 149.99825 * 3 2 1 7 7 C 1.37883 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99343 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00050 * 179.97438 * 7 2 1 10 10 O 1.42906 * 109.46908 * 179.97438 * 9 7 2 11 11 C 1.35971 * 116.99786 * 179.97438 * 10 9 7 12 12 C 1.38884 * 119.91616 * 0.02562 * 11 10 9 13 13 C 1.38084 * 120.22518 * 179.72047 * 12 11 10 14 14 C 1.38654 * 119.92089 * 0.27876 * 13 12 11 15 15 N 1.39448 * 133.27188 * 179.97438 * 14 13 12 16 16 H 0.97003 * 125.83370 * 0.05981 * 15 14 13 17 17 C 1.34633 * 108.32604 * 180.02562 * 15 14 13 18 18 S 1.71198 * 125.15550 * 179.97438 * 17 15 14 19 19 N 1.34625 * 109.68484 * 0.02562 * 17 15 14 20 20 H 0.97002 * 125.79360 * 179.97438 * 19 17 15 21 21 C 1.39229 * 108.40633 * 359.97438 * 19 17 15 22 22 C 1.38540 * 119.91408 * 180.27989 * 11 10 9 23 23 H 0.96995 * 120.00034 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47563 * 60.00336 * 9 7 2 25 25 H 1.08996 * 109.47374 * 299.99804 * 9 7 2 26 26 H 1.08002 * 119.88940 * 0.02562 * 12 11 10 27 27 H 1.08005 * 120.04162 * 180.25729 * 13 12 11 28 28 H 1.07997 * 120.09581 * 359.97438 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 3.9878 -2.5414 -0.0010 11 6 5.3358 -2.7195 -0.0020 12 6 6.1802 -1.6168 -0.0026 13 6 7.5501 -1.7903 0.0022 14 6 8.0852 -3.0694 0.0017 15 7 9.3908 -3.5594 0.0052 16 1 10.1988 -3.0226 0.0097 17 6 9.3381 -4.9047 0.0021 18 16 10.6982 -5.9445 0.0039 19 7 8.0538 -5.3082 -0.0038 20 1 7.7484 -6.2289 -0.0074 21 6 7.2384 -4.1796 -0.0040 22 6 5.8634 -4.0005 -0.0078 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6805 0.8889 25 1 3.8745 -0.6801 -0.8911 26 1 5.7640 -0.6202 -0.0018 27 1 8.2040 -0.9307 0.0060 28 1 5.2057 -4.8571 -0.0111 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259982611.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:13 Heat of formation + Delta-G solvation = 26.547555 kcal Electronic energy + Delta-G solvation = -15103.142023 eV Core-core repulsion = 12439.243973 eV Total energy + Delta-G solvation = -2663.898050 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.77099 -39.33851 -36.22071 -34.68027 -32.99853 -30.67913 -29.60109 -28.21789 -24.16687 -23.76546 -23.22363 -21.71842 -19.34521 -18.22794 -17.54210 -16.77354 -16.71112 -16.16268 -15.72869 -15.35076 -15.09635 -14.40066 -14.24442 -13.26565 -12.90827 -12.55096 -12.38075 -11.87735 -11.58978 -11.30506 -11.28739 -11.25292 -10.52535 -10.16556 -9.57456 -9.21721 -8.92600 -8.36618 -7.95299 -7.50944 -6.39552 -4.43534 0.50037 1.10509 1.42175 1.56592 2.48026 2.59605 3.03841 3.07809 3.12900 3.42827 3.76709 4.08468 4.13812 4.60402 4.78838 4.84642 4.90178 5.07807 5.31673 5.63116 5.69691 5.97220 6.05054 6.25009 6.31918 6.46693 6.61465 6.79430 7.15778 7.65728 8.25925 8.68739 9.14424 10.72461 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.064925 B = 0.004244 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.162170 B = 6595.191616 C = 7011.204582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.080 3.920 3 Si 0.873 3.127 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.535 4.535 8 H 0.088 0.912 9 C 0.166 3.834 10 O -0.292 6.292 11 C 0.178 3.822 12 C -0.186 4.186 13 C -0.050 4.050 14 C 0.016 3.984 15 N -0.567 5.567 16 H 0.446 0.554 17 C 0.517 3.483 18 S -0.624 6.624 19 N -0.571 5.571 20 H 0.448 0.552 21 C 0.116 3.884 22 C -0.152 4.152 23 H 0.271 0.729 24 H 0.023 0.977 25 H 0.019 0.981 26 H 0.148 0.852 27 H 0.138 0.862 28 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.537 -1.872 0.005 13.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.124 4.124 3 Si 0.699 3.301 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.572 4.572 8 H 0.106 0.894 9 C 0.092 3.908 10 O -0.203 6.203 11 C 0.127 3.873 12 C -0.206 4.206 13 C -0.071 4.071 14 C -0.088 4.088 15 N -0.186 5.186 16 H 0.290 0.710 17 C 0.157 3.843 18 S -0.493 6.493 19 N -0.191 5.191 20 H 0.292 0.708 21 C 0.010 3.990 22 C -0.175 4.175 23 H 0.082 0.918 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.166 0.834 27 H 0.156 0.844 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 14.031 -2.531 0.008 14.258 hybrid contribution -0.077 1.511 -0.009 1.513 sum 13.954 -1.020 -0.001 13.991 Atomic orbital electron populations 1.69834 1.06062 1.27634 1.48419 1.24708 0.94861 0.98740 0.94141 0.86897 0.80371 0.83715 0.79091 1.19533 1.20304 1.18944 1.20711 0.87137 0.95919 1.53444 0.89422 1.21150 0.96968 0.76447 0.96189 1.86234 1.15075 1.33758 1.85232 1.18789 0.85277 0.92173 0.91044 1.21372 0.92495 1.00023 1.06748 1.19899 0.94817 0.93116 0.99302 1.18202 0.82808 0.94788 1.13032 1.42855 1.08176 1.04938 1.62619 0.71036 1.22652 0.89472 0.86052 0.86153 1.93627 1.25517 1.54132 1.76039 1.42901 1.03553 1.09743 1.62918 0.70793 1.17876 0.92227 0.84628 1.04226 1.19086 0.90197 0.97023 1.11144 0.91842 0.95899 0.96342 0.83420 0.84401 0.83683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.96 13.96 55.43 0.77 -24.19 15 2 C 0.08 2.11 5.47 -17.82 -0.10 2.01 15 3 Si 0.87 18.78 27.47 -169.99 -4.67 14.12 15 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 5 H -0.28 -5.98 7.11 56.52 0.40 -5.57 15 6 H -0.26 -5.24 6.54 56.52 0.37 -4.87 15 7 C -0.53 -14.08 9.99 -34.44 -0.34 -14.42 15 8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 15 9 C 0.17 3.53 3.56 36.00 0.13 3.65 15 10 O -0.29 -5.70 10.12 -19.65 -0.20 -5.90 15 11 C 0.18 2.70 6.68 -39.23 -0.26 2.44 15 12 C -0.19 -2.41 9.03 -39.40 -0.36 -2.76 15 13 C -0.05 -0.51 10.06 -39.48 -0.40 -0.91 15 14 C 0.02 0.17 7.26 -83.72 -0.61 -0.44 15 15 N -0.57 -5.67 6.16 -11.45 -0.07 -5.74 15 16 H 0.45 3.32 8.96 -40.82 -0.37 2.96 15 17 C 0.52 6.30 8.21 -87.18 -0.72 5.58 15 18 S -0.62 -9.88 31.19 -107.50 -3.35 -13.24 15 19 N -0.57 -6.03 6.14 -11.50 -0.07 -6.11 15 20 H 0.45 3.71 8.96 -40.82 -0.37 3.34 15 21 C 0.12 1.34 7.25 -83.83 -0.61 0.73 15 22 C -0.15 -1.93 10.00 -39.31 -0.39 -2.33 15 23 H 0.27 7.09 8.31 -40.82 -0.34 6.75 15 24 H 0.02 0.47 6.71 -51.93 -0.35 0.12 15 25 H 0.02 0.38 7.08 -51.93 -0.37 0.01 15 26 H 0.15 1.90 6.27 -52.49 -0.33 1.57 15 27 H 0.14 0.98 8.06 -52.48 -0.42 0.56 15 28 H 0.15 1.65 8.06 -52.49 -0.42 1.23 15 LS Contribution 263.79 15.07 3.98 3.98 Total: -1.00 -31.09 263.79 -9.48 -40.57 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -2.21 Total: 2.95 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.65 Total: -6.44 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.63 Total: -36.04 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.20 Total: -5.90 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.67 Total: 14.12 kcal Atomic # 16 Polarization: -9.88 SS G_CDS: -3.35 Total: -13.24 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.09 -9.48 -40.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982611.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.120 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds