Wall clock time and date at job start Mon Mar 30 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48496 * 109.47458 * 270.00236 * 3 2 1 5 5 H 1.48501 * 109.46823 * 30.00329 * 3 2 1 6 6 H 1.48500 * 109.47201 * 149.99825 * 3 2 1 7 7 C 1.37883 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99343 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00050 * 179.97438 * 7 2 1 10 10 O 1.42906 * 109.46908 * 179.97438 * 9 7 2 11 11 C 1.35971 * 116.99786 * 179.97438 * 10 9 7 12 12 C 1.38884 * 119.91616 * 0.02562 * 11 10 9 13 13 C 1.38084 * 120.22518 * 179.72047 * 12 11 10 14 14 C 1.38654 * 119.92089 * 0.27876 * 13 12 11 15 15 N 1.39448 * 133.27188 * 179.97438 * 14 13 12 16 16 H 0.97003 * 125.83370 * 0.05981 * 15 14 13 17 17 C 1.34633 * 108.32604 * 180.02562 * 15 14 13 18 18 S 1.71198 * 125.15550 * 179.97438 * 17 15 14 19 19 N 1.34625 * 109.68484 * 0.02562 * 17 15 14 20 20 H 0.97002 * 125.79360 * 179.97438 * 19 17 15 21 21 C 1.39229 * 108.40633 * 359.97438 * 19 17 15 22 22 C 1.38540 * 119.91408 * 180.27989 * 11 10 9 23 23 H 0.96995 * 120.00034 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47563 * 60.00336 * 9 7 2 25 25 H 1.08996 * 109.47374 * 299.99804 * 9 7 2 26 26 H 1.08002 * 119.88940 * 0.02562 * 12 11 10 27 27 H 1.08005 * 120.04162 * 180.25729 * 13 12 11 28 28 H 1.07997 * 120.09581 * 359.97438 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 3.9878 -2.5414 -0.0010 11 6 5.3358 -2.7195 -0.0020 12 6 6.1802 -1.6168 -0.0026 13 6 7.5501 -1.7903 0.0022 14 6 8.0852 -3.0694 0.0017 15 7 9.3908 -3.5594 0.0052 16 1 10.1988 -3.0226 0.0097 17 6 9.3381 -4.9047 0.0021 18 16 10.6982 -5.9445 0.0039 19 7 8.0538 -5.3082 -0.0038 20 1 7.7484 -6.2289 -0.0074 21 6 7.2384 -4.1796 -0.0040 22 6 5.8634 -4.0005 -0.0078 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6805 0.8889 25 1 3.8745 -0.6801 -0.8911 26 1 5.7640 -0.6202 -0.0018 27 1 8.2040 -0.9307 0.0060 28 1 5.2057 -4.8571 -0.0111 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259982611.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:13 Heat of formation + Delta-G solvation = 5.573050 kcal Electronic energy + Delta-G solvation = -15104.051546 eV Core-core repulsion = 12439.243973 eV Total energy + Delta-G solvation = -2664.807573 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.74581 -40.57335 -37.37245 -35.62687 -34.93142 -31.76811 -30.85266 -29.69737 -25.27892 -24.89551 -24.44513 -23.01375 -20.34119 -19.61575 -18.91641 -18.10257 -17.68080 -17.14952 -17.04413 -16.58237 -16.47894 -15.96074 -15.10644 -14.79002 -14.03684 -13.97994 -13.63597 -13.10390 -12.83196 -12.73683 -12.71742 -12.39508 -11.95319 -11.76784 -11.43379 -10.87353 -10.22521 -9.46218 -9.18976 -8.64107 -8.39307 -6.50934 -0.47515 0.09221 0.35992 0.61606 1.36995 1.40488 1.48114 1.51244 1.68036 2.28963 2.44038 2.52788 2.93903 3.23051 3.62413 3.79945 3.93195 4.13223 4.35929 4.45055 4.67278 4.82131 4.83424 5.04796 5.16933 5.36609 5.42211 5.67953 5.95055 5.95516 6.53880 6.67936 7.12818 8.76941 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.064925 B = 0.004244 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.162170 B = 6595.191616 C = 7011.204582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.016 3.984 3 Si 0.951 3.049 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.228 1.228 7 C -0.555 4.555 8 H 0.034 0.966 9 C 0.177 3.823 10 O -0.324 6.324 11 C 0.146 3.854 12 C -0.188 4.188 13 C -0.028 4.028 14 C 0.025 3.975 15 N -0.544 5.544 16 H 0.460 0.540 17 C 0.526 3.474 18 S -0.695 6.695 19 N -0.555 5.555 20 H 0.457 0.543 21 C 0.112 3.888 22 C -0.148 4.148 23 H 0.274 0.726 24 H 0.039 0.961 25 H 0.038 0.962 26 H 0.155 0.845 27 H 0.181 0.819 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.105 0.262 0.027 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.183 4.183 3 Si 0.771 3.229 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.151 1.151 7 C -0.593 4.593 8 H 0.052 0.948 9 C 0.104 3.896 10 O -0.236 6.236 11 C 0.097 3.903 12 C -0.208 4.208 13 C -0.049 4.049 14 C -0.080 4.080 15 N -0.163 5.163 16 H 0.307 0.693 17 C 0.163 3.837 18 S -0.564 6.564 19 N -0.175 5.175 20 H 0.303 0.697 21 C 0.006 3.994 22 C -0.171 4.171 23 H 0.083 0.917 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.172 0.828 27 H 0.198 0.802 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 16.636 -0.423 0.031 16.641 hybrid contribution -0.927 0.743 -0.020 1.188 sum 15.709 0.320 0.011 15.712 Atomic orbital electron populations 1.70014 1.08493 1.29045 1.50091 1.25835 0.95787 1.03541 0.93157 0.85683 0.80077 0.77103 0.80039 1.18226 1.20503 1.15107 1.21031 0.90412 0.94208 1.53654 0.94810 1.20816 0.93468 0.77907 0.97458 1.86141 1.18066 1.32581 1.86846 1.19041 0.83743 0.93876 0.93656 1.21488 0.93303 0.99463 1.06575 1.20218 0.94124 0.93998 0.96577 1.18372 0.82681 0.95018 1.11881 1.42789 1.08668 1.04140 1.60671 0.69325 1.22090 0.88766 0.86298 0.86570 1.93803 1.27605 1.55823 1.79214 1.42868 1.02904 1.10348 1.61345 0.69659 1.17824 0.91926 0.85154 1.04489 1.19084 0.90833 0.96672 1.10492 0.91653 0.94302 0.94448 0.82771 0.80152 0.83202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.92 13.96 21.45 0.30 -54.62 15 2 C 0.02 0.85 5.47 84.66 0.46 1.31 15 3 Si 0.95 37.44 27.47 68.60 1.88 39.32 15 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 15 5 H -0.28 -11.02 7.11 99.48 0.71 -10.31 15 6 H -0.23 -7.61 6.54 99.48 0.65 -6.96 15 7 C -0.56 -30.13 9.99 25.60 0.26 -29.88 15 8 H 0.03 2.11 8.06 -2.91 -0.02 2.08 15 9 C 0.18 7.34 3.56 71.23 0.25 7.59 15 10 O -0.32 -12.60 10.12 -93.22 -0.94 -13.54 15 11 C 0.15 4.15 6.68 22.50 0.15 4.30 15 12 C -0.19 -4.14 9.03 22.39 0.20 -3.93 15 13 C -0.03 -0.43 10.06 22.33 0.22 -0.21 15 14 C 0.03 0.44 7.26 38.37 0.28 0.72 15 15 N -0.54 -8.83 6.16 -190.15 -1.17 -10.01 15 16 H 0.46 4.97 8.96 -92.71 -0.83 4.14 15 17 C 0.53 11.57 8.21 179.15 1.47 13.05 15 18 S -0.69 -21.43 31.19 -56.49 -1.76 -23.19 15 19 N -0.56 -10.43 6.14 -190.31 -1.17 -11.60 15 20 H 0.46 6.77 8.96 -92.71 -0.83 5.94 15 21 C 0.11 2.27 7.25 38.40 0.28 2.55 15 22 C -0.15 -3.52 10.00 22.44 0.22 -3.29 15 23 H 0.27 14.77 8.31 -92.71 -0.77 14.00 15 24 H 0.04 1.48 6.71 -2.39 -0.02 1.46 15 25 H 0.04 1.41 7.08 -2.39 -0.02 1.39 15 26 H 0.15 3.24 6.27 -2.91 -0.02 3.22 15 27 H 0.18 1.30 8.06 -2.91 -0.02 1.28 15 28 H 0.15 3.30 8.06 -2.91 -0.02 3.28 15 Total: -1.00 -71.27 263.79 0.45 -70.82 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -0.49 Total: 10.61 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 3.80 Total: -7.79 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -2.04 Total: -76.23 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.94 Total: -13.54 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 1.88 Total: 39.32 kcal Atomic # 16 Polarization: -21.43 SS G_CDS: -1.76 Total: -23.19 kcal Total: -71.27 0.45 -70.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259982611.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.390 kcal (2) G-P(sol) polarization free energy of solvation -71.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds