Wall clock time and date at job start Mon Mar 30 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30119 * 124.95299 * 2 1 4 4 C 1.35785 * 109.64757 * 180.02562 * 3 2 1 5 5 C 1.39772 * 133.58478 * 180.02562 * 4 3 2 6 6 C 1.36592 * 119.90777 * 179.97438 * 5 4 3 7 7 C 1.38775 * 120.67774 * 0.08053 * 6 5 4 8 8 C 1.37958 * 120.43742 * 359.88358 * 7 6 5 9 9 Cl 1.73595 * 120.16320 * 180.35202 * 8 7 6 10 10 C 1.38935 * 119.66560 * 0.07381 * 8 7 6 11 11 N 1.36022 * 124.95215 * 180.02562 * 2 1 3 12 12 C 1.46492 * 126.35308 * 359.95186 * 11 2 1 13 13 C 1.50705 * 109.47607 * 270.02750 * 12 11 2 14 14 H 1.07999 * 119.99707 * 0.02562 * 13 12 11 15 15 C 1.37867 * 120.00028 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00615 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99857 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47066 * 60.00026 * 17 15 13 19 19 H 1.48505 * 109.47443 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47434 * 300.00438 * 17 15 13 21 21 H 1.08997 * 109.46738 * 269.97791 * 1 2 3 22 22 H 1.08999 * 109.46783 * 29.98048 * 1 2 3 23 23 H 1.08998 * 109.47101 * 149.97966 * 1 2 3 24 24 H 1.07998 * 120.04777 * 0.02562 * 5 4 3 25 25 H 1.07999 * 119.66403 * 180.02562 * 6 5 4 26 26 H 1.07999 * 119.78061 * 179.97438 * 7 6 5 27 27 H 1.08998 * 109.47182 * 30.03111 * 12 11 2 28 28 H 1.09000 * 109.47416 * 150.02943 * 12 11 2 29 29 H 0.96993 * 120.00497 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2525 1.0665 0.0000 4 6 3.5622 0.7081 -0.0006 5 6 4.7589 1.4302 -0.0004 6 6 5.9537 0.7684 -0.0006 7 6 5.9948 -0.6188 -0.0027 8 6 4.8265 -1.3525 -0.0022 9 17 4.8862 -3.0874 0.0044 10 6 3.6021 -0.6960 -0.0011 11 7 2.2863 -1.1149 -0.0005 12 6 1.8167 -2.5025 -0.0001 13 6 1.6560 -2.9782 1.4208 14 1 1.8807 -2.3132 2.2415 15 6 1.2211 -4.2620 1.6730 16 7 0.9469 -5.0717 0.6736 17 14 1.0226 -4.8518 3.4343 18 1 0.0336 -3.9937 4.1352 19 1 0.5453 -6.2580 3.4347 20 1 2.3303 -4.7721 4.1334 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3633 -0.8898 -0.5141 24 1 4.7388 2.5100 0.0008 25 1 6.8760 1.3303 0.0000 26 1 6.9476 -1.1272 -0.0033 27 1 0.8572 -2.5615 -0.5138 28 1 2.5432 -3.1321 -0.5140 29 1 0.6413 -5.9750 0.8510 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260008000.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:33 Heat of formation + Delta-G solvation = 53.151814 kcal Electronic energy + Delta-G solvation = -15871.673251 eV Core-core repulsion = 13206.885142 eV Total energy + Delta-G solvation = -2664.788109 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.55270 -37.19643 -35.82199 -34.00690 -32.28954 -30.92172 -29.71907 -27.29620 -27.03073 -23.39176 -21.76935 -21.56563 -19.36650 -16.92832 -16.83718 -16.24981 -15.15751 -14.88279 -14.59352 -14.09355 -13.62361 -12.87437 -12.76296 -12.59151 -12.36728 -11.93234 -11.71376 -11.62700 -11.47457 -11.09598 -10.96546 -10.70378 -10.31723 -10.04778 -9.91846 -9.47530 -9.24018 -8.65477 -7.77223 -7.45354 -6.30076 -4.37586 1.28161 1.94779 2.72133 3.19395 3.22649 3.23946 3.31413 3.52732 4.21875 4.25752 4.63611 5.04719 5.15862 5.25755 5.52650 5.65075 5.74696 5.89512 5.93776 6.08571 6.20709 6.31023 6.58057 6.72472 6.83745 6.95475 7.21216 7.36144 7.60301 7.82091 7.90228 8.46679 8.66269 9.29109 10.77672 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.009326 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.698952 B = 3001.756329 C = 3787.533308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.288 3.712 3 N -0.518 5.518 4 C 0.053 3.947 5 C -0.072 4.072 6 C -0.128 4.128 7 C -0.118 4.118 8 C -0.011 4.011 9 Cl -0.054 7.054 10 C 0.054 3.946 11 N -0.447 5.447 12 C 0.228 3.772 13 C -0.533 4.533 14 H 0.061 0.939 15 C 0.071 3.929 16 N -0.888 5.888 17 Si 0.900 3.100 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.274 1.274 21 H 0.087 0.913 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.125 0.875 25 H 0.129 0.871 26 H 0.131 0.869 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.100 7.113 -2.149 9.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.023 3.977 3 N -0.240 5.240 4 C -0.069 4.069 5 C -0.092 4.092 6 C -0.149 4.149 7 C -0.139 4.139 8 C -0.040 4.040 9 Cl -0.025 7.025 10 C -0.060 4.060 11 N -0.131 5.131 12 C 0.110 3.890 13 C -0.572 4.572 14 H 0.079 0.921 15 C -0.132 4.132 16 N -0.526 5.526 17 Si 0.727 3.273 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.199 1.199 21 H 0.105 0.895 22 H 0.103 0.897 23 H 0.101 0.899 24 H 0.143 0.857 25 H 0.147 0.853 26 H 0.149 0.851 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.645 7.382 -2.203 8.996 hybrid contribution 0.181 -1.556 1.013 1.865 sum 4.826 5.826 -1.191 7.658 Atomic orbital electron populations 1.20291 0.84718 1.03745 1.04155 1.23538 0.95878 0.81156 0.97159 1.70390 1.00235 1.27733 1.25667 1.19049 0.92501 0.89560 1.05778 1.19918 0.89234 0.99380 1.00658 1.20393 0.97396 0.93276 1.03819 1.20672 0.95840 0.93845 1.03514 1.19934 0.91769 0.85184 1.07162 1.98395 1.98482 1.08892 1.96717 1.18590 0.85704 0.94511 1.07206 1.46098 1.03118 1.10056 1.53846 1.20020 0.96983 0.72461 0.99559 1.21120 1.46783 0.98417 0.90853 0.92065 1.24847 0.94550 0.96033 0.97817 1.69898 1.44236 1.07448 1.31008 0.86504 0.78885 0.77810 0.84079 1.19919 1.20937 1.19920 0.89474 0.89715 0.89856 0.85676 0.85334 0.85094 0.93333 0.91978 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.17 36.01 0.37 -0.77 15 2 C 0.29 5.91 7.85 -154.83 -1.22 4.69 15 3 N -0.52 -10.80 11.27 -8.24 -0.09 -10.89 15 4 C 0.05 1.07 7.23 -84.71 -0.61 0.46 15 5 C -0.07 -1.19 10.05 -39.60 -0.40 -1.58 15 6 C -0.13 -1.84 9.96 -39.98 -0.40 -2.24 15 7 C -0.12 -1.88 9.82 -39.49 -0.39 -2.27 15 8 C -0.01 -0.22 6.33 -39.43 -0.25 -0.47 15 9 Cl -0.05 -1.09 26.35 -51.86 -1.37 -2.46 15 10 C 0.05 1.17 6.82 -83.95 -0.57 0.59 15 11 N -0.45 -10.06 2.79 -112.41 -0.31 -10.37 15 12 C 0.23 5.54 5.16 -5.20 -0.03 5.51 15 13 C -0.53 -14.01 9.39 -34.44 -0.32 -14.33 15 14 H 0.06 1.68 7.81 -52.49 -0.41 1.27 15 15 C 0.07 1.88 5.46 -17.82 -0.10 1.79 15 16 N -0.89 -24.22 13.29 55.43 0.74 -23.49 15 17 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 15 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 21 H 0.09 1.35 8.14 -51.93 -0.42 0.92 15 22 H 0.08 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.08 1.32 7.01 -51.93 -0.36 0.96 15 24 H 0.13 1.75 8.06 -52.49 -0.42 1.32 15 25 H 0.13 1.36 8.06 -52.49 -0.42 0.94 15 26 H 0.13 1.72 8.06 -52.49 -0.42 1.30 15 27 H 0.05 1.19 7.00 -51.93 -0.36 0.83 15 28 H 0.06 1.59 5.98 -51.93 -0.31 1.28 15 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 15 LS Contribution 269.37 15.07 4.06 4.06 Total: -1.00 -29.09 269.37 -8.61 -37.70 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -2.70 Total: -1.62 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -3.92 Total: -8.63 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.33 Total: -44.75 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.37 Total: -2.46 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.09 -8.61 -37.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260008000.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.855 kcal (2) G-P(sol) polarization free energy of solvation -29.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds