Wall clock time and date at job start Mon Mar 30 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.46843 * 2 1 4 4 N 1.30077 * 124.98519 * 90.01957 * 3 2 1 5 5 C 1.35897 * 109.73786 * 180.02562 * 4 3 2 6 6 C 1.40541 * 107.02553 * 0.02562 * 5 4 3 7 7 C 1.38699 * 119.97410 * 179.97438 * 6 5 4 8 8 C 1.38001 * 119.85347 * 359.97438 * 7 6 5 9 9 C 1.38671 * 120.45070 * 359.97438 * 8 7 6 10 10 C 1.37884 * 120.50081 * 359.97438 * 9 8 7 11 11 Cl 1.73596 * 120.12668 * 180.02562 * 10 9 8 12 12 N 1.36557 * 124.97494 * 270.26720 * 3 2 1 13 13 C 1.37307 * 126.39798 * 0.05261 * 12 3 2 14 14 H 1.07995 * 120.00206 * 326.67004 * 13 12 3 15 15 C 1.38905 * 119.99560 * 146.67552 * 13 12 3 16 16 N 1.31392 * 120.00518 * 339.05508 * 15 13 12 17 17 Si 1.86803 * 119.99818 * 159.05251 * 15 13 12 18 18 H 1.48501 * 109.47129 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47196 * 120.00071 * 17 15 13 20 20 H 1.48503 * 109.47203 * 239.99757 * 17 15 13 21 21 H 1.08999 * 109.47403 * 300.00099 * 1 2 3 22 22 H 1.08997 * 109.47259 * 60.00382 * 1 2 3 23 23 H 1.09004 * 109.47026 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47403 * 239.99901 * 2 1 3 25 25 H 1.09003 * 109.47050 * 119.99222 * 2 1 3 26 26 H 1.07999 * 120.07573 * 179.97438 * 7 6 5 27 27 H 1.07996 * 119.77993 * 179.97438 * 8 7 6 28 28 H 1.07996 * 119.75309 * 179.97438 * 9 8 7 29 29 H 0.96997 * 120.00457 * 181.64728 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2812 2.1239 1.0657 5 6 2.7175 3.3603 0.7083 6 6 2.7307 3.4019 -0.6964 7 6 3.1367 4.5550 -1.3517 8 6 3.5264 5.6591 -0.6215 9 6 3.5146 5.6248 0.7648 10 6 3.1131 4.4877 1.4333 11 17 3.1015 4.4556 3.1689 12 7 2.2883 2.1606 -1.1189 13 6 2.1354 1.7495 -2.4201 14 1 2.3136 0.7178 -2.6849 15 6 1.7517 2.6607 -3.3957 16 7 1.1467 3.7753 -3.0523 17 14 2.0961 2.3015 -5.1963 18 1 2.7823 0.9901 -5.3170 19 1 0.8152 2.2603 -5.9466 20 1 2.9638 3.3683 -5.7568 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8901 26 1 3.1478 4.5886 -2.4311 27 1 3.8426 6.5562 -1.1329 28 1 3.8222 6.4953 1.3251 29 1 0.8574 4.4005 -3.7352 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260022011.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:20 Heat of formation + Delta-G solvation = 47.031846 kcal Electronic energy + Delta-G solvation = -16020.149918 eV Core-core repulsion = 13355.096428 eV Total energy + Delta-G solvation = -2665.053491 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.90471 -36.68082 -35.36044 -34.25385 -32.63519 -31.27464 -29.03948 -27.79125 -25.33489 -23.66710 -21.45052 -20.84264 -19.37662 -17.85370 -16.38379 -15.59565 -14.87629 -14.69594 -14.22560 -13.68750 -13.41430 -13.24815 -13.01574 -12.21028 -12.05700 -11.69347 -11.51864 -11.40104 -11.11555 -10.84136 -10.82124 -10.58377 -10.41618 -10.21380 -10.09320 -9.60314 -8.89683 -8.79389 -7.34894 -7.01393 -6.77905 -4.60417 1.87879 2.53004 2.90644 2.96310 3.01030 3.05438 3.69196 3.90653 4.46216 4.59866 4.86581 5.11223 5.72804 5.76668 5.81293 5.93897 6.15746 6.26722 6.31051 6.41618 6.50458 6.61085 6.74873 6.78901 6.91559 7.03588 7.22543 7.43288 7.64233 7.83589 8.04144 8.52349 9.09510 9.27899 10.10302 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.009494 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.913687 B = 2948.520667 C = 4004.060460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 C 0.217 3.783 4 N -0.516 5.516 5 C 0.035 3.965 6 C 0.052 3.948 7 C -0.036 4.036 8 C -0.151 4.151 9 C -0.132 4.132 10 C 0.002 3.998 11 Cl -0.096 7.096 12 N -0.281 5.281 13 C -0.358 4.358 14 H 0.112 0.888 15 C 0.055 3.945 16 N -0.818 5.818 17 Si 0.927 3.073 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.271 1.271 21 H 0.054 0.946 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 -0.680 0.605 1.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.065 4.065 3 C -0.045 4.045 4 N -0.238 5.238 5 C -0.091 4.091 6 C -0.065 4.065 7 C -0.056 4.056 8 C -0.173 4.173 9 C -0.154 4.154 10 C -0.026 4.026 11 Cl -0.067 7.067 12 N 0.049 4.951 13 C -0.486 4.486 14 H 0.129 0.871 15 C -0.158 4.158 16 N -0.447 5.447 17 Si 0.751 3.249 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.196 1.196 21 H 0.074 0.926 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.097 0.903 26 H 0.139 0.861 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.468 -0.881 1.322 2.163 hybrid contribution 0.020 0.363 -1.633 1.673 sum 1.489 -0.518 -0.311 1.607 Atomic orbital electron populations 1.21645 0.94647 1.00859 1.02678 1.19753 0.95999 0.88178 1.02547 1.23303 1.02770 0.96642 0.81746 1.70213 1.23021 1.02808 1.27717 1.18385 1.06978 0.93172 0.90558 1.18490 1.05380 0.90026 0.92559 1.20143 0.95810 0.90019 0.99641 1.20490 1.06044 0.98058 0.92689 1.20414 1.04572 0.96116 0.94292 1.19736 1.06878 0.94028 0.81994 1.98274 1.97368 1.98785 1.12264 1.41219 1.39577 1.08379 1.05915 1.19694 1.50278 0.98015 0.80659 0.87078 1.25573 0.93406 0.95216 1.01642 1.70057 1.28607 1.09969 1.36066 0.85867 0.78905 0.79634 0.80465 1.18496 1.19946 1.19629 0.92647 0.92078 0.92783 0.90612 0.90261 0.86131 0.86448 0.86325 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.89 37.16 0.37 -2.03 15 2 C -0.03 -0.48 6.20 -27.88 -0.17 -0.65 15 3 C 0.22 5.15 7.08 -154.36 -1.09 4.06 15 4 N -0.52 -12.92 11.27 -8.08 -0.09 -13.01 15 5 C 0.03 0.87 7.02 -84.63 -0.59 0.28 15 6 C 0.05 1.33 6.16 -83.87 -0.52 0.81 15 7 C -0.04 -0.84 8.56 -39.50 -0.34 -1.18 15 8 C -0.15 -3.05 10.03 -39.51 -0.40 -3.45 15 9 C -0.13 -2.63 9.80 -39.55 -0.39 -3.02 15 10 C 0.00 0.04 6.35 -39.15 -0.25 -0.21 15 11 Cl -0.10 -1.89 28.97 -51.86 -1.50 -3.39 15 12 N -0.28 -7.14 2.86 -56.65 -0.16 -7.30 15 13 C -0.36 -8.73 9.49 -14.85 -0.14 -8.87 15 14 H 0.11 2.53 7.36 -52.49 -0.39 2.14 15 15 C 0.05 1.29 4.50 -17.49 -0.08 1.21 15 16 N -0.82 -20.35 10.64 55.49 0.59 -19.75 15 17 Si 0.93 17.77 29.60 -169.99 -5.03 12.74 15 18 H -0.26 -4.89 7.11 56.52 0.40 -4.49 15 19 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 20 H -0.27 -5.18 7.11 56.52 0.40 -4.77 15 21 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.06 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 15 24 H 0.08 1.32 7.39 -51.93 -0.38 0.93 15 25 H 0.08 1.33 8.14 -51.93 -0.42 0.91 15 26 H 0.12 2.84 6.26 -52.49 -0.33 2.51 15 27 H 0.12 1.96 8.06 -52.49 -0.42 1.54 15 28 H 0.12 1.98 8.06 -52.49 -0.42 1.55 15 29 H 0.28 6.47 8.31 -40.82 -0.34 6.13 15 LS Contribution 267.78 15.07 4.04 4.04 Total: -1.00 -27.95 267.78 -8.53 -36.48 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -2.77 Total: 3.24 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -3.60 Total: -13.03 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.34 Total: -40.07 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -1.50 Total: -3.39 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -27.95 -8.53 -36.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022011.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.509 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds