Wall clock time and date at job start Mon Mar 30 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.46843 * 2 1 4 4 N 1.30077 * 124.98519 * 90.01957 * 3 2 1 5 5 C 1.35897 * 109.73786 * 180.02562 * 4 3 2 6 6 C 1.40541 * 107.02553 * 0.02562 * 5 4 3 7 7 C 1.38699 * 119.97410 * 179.97438 * 6 5 4 8 8 C 1.38001 * 119.85347 * 359.97438 * 7 6 5 9 9 C 1.38671 * 120.45070 * 359.97438 * 8 7 6 10 10 C 1.37884 * 120.50081 * 359.97438 * 9 8 7 11 11 Cl 1.73596 * 120.12668 * 180.02562 * 10 9 8 12 12 N 1.36557 * 124.97494 * 270.26720 * 3 2 1 13 13 C 1.37307 * 126.39798 * 0.05261 * 12 3 2 14 14 H 1.07995 * 120.00206 * 326.67004 * 13 12 3 15 15 C 1.38905 * 119.99560 * 146.67552 * 13 12 3 16 16 N 1.31392 * 120.00518 * 339.05508 * 15 13 12 17 17 Si 1.86803 * 119.99818 * 159.05251 * 15 13 12 18 18 H 1.48501 * 109.47129 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47196 * 120.00071 * 17 15 13 20 20 H 1.48503 * 109.47203 * 239.99757 * 17 15 13 21 21 H 1.08999 * 109.47403 * 300.00099 * 1 2 3 22 22 H 1.08997 * 109.47259 * 60.00382 * 1 2 3 23 23 H 1.09004 * 109.47026 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47403 * 239.99901 * 2 1 3 25 25 H 1.09003 * 109.47050 * 119.99222 * 2 1 3 26 26 H 1.07999 * 120.07573 * 179.97438 * 7 6 5 27 27 H 1.07996 * 119.77993 * 179.97438 * 8 7 6 28 28 H 1.07996 * 119.75309 * 179.97438 * 9 8 7 29 29 H 0.96997 * 120.00457 * 181.64728 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2812 2.1239 1.0657 5 6 2.7175 3.3603 0.7083 6 6 2.7307 3.4019 -0.6964 7 6 3.1367 4.5550 -1.3517 8 6 3.5264 5.6591 -0.6215 9 6 3.5146 5.6248 0.7648 10 6 3.1131 4.4877 1.4333 11 17 3.1015 4.4556 3.1689 12 7 2.2883 2.1606 -1.1189 13 6 2.1354 1.7495 -2.4201 14 1 2.3136 0.7178 -2.6849 15 6 1.7517 2.6607 -3.3957 16 7 1.1467 3.7753 -3.0523 17 14 2.0961 2.3015 -5.1963 18 1 2.7823 0.9901 -5.3170 19 1 0.8152 2.2603 -5.9466 20 1 2.9638 3.3683 -5.7568 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5137 0.8901 26 1 3.1478 4.5886 -2.4311 27 1 3.8426 6.5562 -1.1329 28 1 3.8222 6.4953 1.3251 29 1 0.8574 4.4005 -3.7352 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260022011.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:20 Heat of formation + Delta-G solvation = 32.954261 kcal Electronic energy + Delta-G solvation = -16020.760368 eV Core-core repulsion = 13355.096428 eV Total energy + Delta-G solvation = -2665.663941 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.66353 -38.34796 -36.99753 -36.02563 -34.13857 -33.07795 -30.74914 -29.46997 -27.13956 -25.20335 -23.18573 -22.53932 -21.10347 -19.60107 -18.09289 -17.37087 -16.50006 -16.32529 -15.95946 -15.34065 -15.08277 -14.78483 -14.57984 -13.86368 -13.68344 -13.31879 -13.11592 -12.98705 -12.71170 -12.42172 -12.33363 -12.10889 -11.89596 -11.85531 -11.69720 -11.35801 -10.69041 -10.60166 -9.10563 -8.76696 -8.52565 -6.44510 0.15166 0.83913 1.35737 1.39937 1.40750 1.54007 2.06448 2.17972 2.74448 2.85036 3.10429 3.48483 4.17208 4.24118 4.29394 4.48555 4.59182 4.61931 4.78765 4.84979 4.95075 5.01993 5.13813 5.22486 5.29835 5.37249 5.53339 5.72421 5.91940 6.11890 6.25090 6.73651 7.30548 7.48756 8.36664 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.009494 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.913687 B = 2948.520667 C = 4004.060460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.025 4.025 3 C 0.202 3.798 4 N -0.538 5.538 5 C 0.004 3.996 6 C 0.021 3.979 7 C -0.061 4.061 8 C -0.136 4.136 9 C -0.121 4.121 10 C -0.016 4.016 11 Cl -0.078 7.078 12 N -0.299 5.299 13 C -0.383 4.383 14 H 0.120 0.880 15 C 0.019 3.981 16 N -0.853 5.853 17 Si 0.998 3.002 18 H -0.253 1.253 19 H -0.270 1.270 20 H -0.269 1.269 21 H 0.043 0.957 22 H 0.034 0.966 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.158 0.842 28 H 0.158 0.842 29 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.185 -0.424 0.207 2.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.064 4.064 3 C -0.059 4.059 4 N -0.261 5.261 5 C -0.121 4.121 6 C -0.095 4.095 7 C -0.081 4.081 8 C -0.157 4.157 9 C -0.142 4.142 10 C -0.045 4.045 11 Cl -0.049 7.049 12 N 0.030 4.970 13 C -0.510 4.510 14 H 0.137 0.863 15 C -0.191 4.191 16 N -0.483 5.483 17 Si 0.819 3.181 18 H -0.176 1.176 19 H -0.196 1.196 20 H -0.194 1.194 21 H 0.062 0.938 22 H 0.054 0.946 23 H 0.113 0.887 24 H 0.105 0.895 25 H 0.116 0.884 26 H 0.129 0.871 27 H 0.175 0.825 28 H 0.176 0.824 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.952 -0.626 0.944 2.257 hybrid contribution -0.115 0.349 -1.401 1.448 sum 1.837 -0.277 -0.457 1.913 Atomic orbital electron populations 1.21562 0.93513 1.02890 1.00755 1.19969 0.96826 0.85710 1.03926 1.24243 1.02105 0.98257 0.81333 1.70185 1.24084 1.03303 1.28484 1.18875 1.08060 0.94091 0.91067 1.18992 1.06340 0.90885 0.93289 1.20290 0.97562 0.90786 0.99500 1.20965 1.03552 0.98180 0.92977 1.20876 1.02559 0.96411 0.94394 1.20049 1.07129 0.94062 0.83235 1.98268 1.97309 1.98764 1.10537 1.41483 1.40215 1.08747 1.06518 1.20090 1.51129 0.98854 0.80933 0.86301 1.26473 0.92421 0.94688 1.05534 1.70146 1.29561 1.11037 1.37526 0.84822 0.78702 0.79668 0.74922 1.17615 1.19554 1.19409 0.93804 0.94626 0.88706 0.89517 0.88414 0.87088 0.82493 0.82423 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 9.89 71.98 0.71 -3.62 15 2 C -0.03 -0.94 6.20 29.85 0.19 -0.75 15 3 C 0.20 9.79 7.08 137.76 0.98 10.77 15 4 N -0.54 -27.44 11.27 -179.49 -2.02 -29.47 15 5 C 0.00 0.20 7.02 39.44 0.28 0.47 15 6 C 0.02 1.09 6.16 38.78 0.24 1.33 15 7 C -0.06 -2.86 8.56 22.32 0.19 -2.66 15 8 C -0.14 -5.21 10.03 22.32 0.22 -4.99 15 9 C -0.12 -4.55 9.80 22.29 0.22 -4.33 15 10 C -0.02 -0.71 6.35 22.55 0.14 -0.57 15 11 Cl -0.08 -2.97 28.97 -2.72 -0.08 -3.05 15 12 N -0.30 -15.55 2.86 -333.14 -0.95 -16.50 15 13 C -0.38 -18.93 9.49 84.00 0.80 -18.13 15 14 H 0.12 5.45 7.36 -2.91 -0.02 5.42 15 15 C 0.02 0.89 4.50 84.92 0.38 1.27 15 16 N -0.85 -43.09 10.64 21.65 0.23 -42.86 15 17 Si 1.00 36.20 29.60 68.60 2.03 38.23 15 18 H -0.25 -8.72 7.11 99.48 0.71 -8.02 15 19 H -0.27 -9.57 7.11 99.48 0.71 -8.86 15 20 H -0.27 -9.58 7.11 99.48 0.71 -8.88 15 21 H 0.04 1.54 8.14 -2.39 -0.02 1.52 15 22 H 0.03 1.35 8.14 -2.39 -0.02 1.33 15 23 H 0.09 2.38 8.14 -2.38 -0.02 2.36 15 24 H 0.09 2.96 7.39 -2.39 -0.02 2.94 15 25 H 0.10 3.19 8.14 -2.39 -0.02 3.17 15 26 H 0.11 5.32 6.26 -2.91 -0.02 5.30 15 27 H 0.16 4.68 8.06 -2.91 -0.02 4.65 15 28 H 0.16 4.62 8.06 -2.91 -0.02 4.59 15 29 H 0.29 13.27 8.31 -92.71 -0.77 12.49 15 Total: -1.00 -61.55 267.78 4.72 -56.83 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 1.17 Total: 18.04 kcal Atomic # 6 Polarization: -25.56 SS G_CDS: 4.34 Total: -21.22 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -2.75 Total: -88.83 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 2.03 Total: 38.23 kcal Atomic # 17 Polarization: -2.97 SS G_CDS: -0.08 Total: -3.05 kcal Total: -61.55 4.72 -56.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022011.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.781 kcal (2) G-P(sol) polarization free energy of solvation -61.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds