Wall clock time and date at job start Mon Mar 30 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30104 * 124.95508 * 2 1 4 4 C 1.35802 * 109.64469 * 180.25050 * 3 2 1 5 5 C 1.39742 * 133.57742 * 179.75468 * 4 3 2 6 6 C 1.36588 * 119.90205 * 179.97438 * 5 4 3 7 7 C 1.38876 * 120.65936 * 0.02562 * 6 5 4 8 8 Cl 1.73604 * 119.79045 * 179.97438 * 7 6 5 9 9 C 1.37955 * 120.41929 * 359.97438 * 7 6 5 10 10 C 1.38826 * 119.68505 * 359.97438 * 9 7 6 11 11 N 1.36074 * 124.95178 * 179.82843 * 2 1 3 12 12 C 1.46491 * 126.34740 * 0.02562 * 11 2 1 13 13 C 1.50702 * 109.46957 * 269.68307 * 12 11 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 H 1.08997 * 109.47680 * 270.16710 * 1 2 3 22 22 H 1.08998 * 109.46844 * 30.16876 * 1 2 3 23 23 H 1.09001 * 109.47050 * 150.16352 * 1 2 3 24 24 H 1.08003 * 120.04932 * 359.97438 * 5 4 3 25 25 H 1.08008 * 119.67155 * 180.02562 * 6 5 4 26 26 H 1.08004 * 120.15967 * 180.02562 * 9 7 6 27 27 H 1.09004 * 109.47166 * 149.68573 * 12 11 2 28 28 H 1.08994 * 109.47507 * 29.68279 * 12 11 2 29 29 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0663 0.0000 4 6 3.5622 0.7078 -0.0056 5 6 4.7586 1.4298 -0.0124 6 6 5.9534 0.7679 -0.0164 7 6 5.9939 -0.6202 -0.0144 8 17 7.5251 -1.4384 -0.0202 9 6 4.8252 -1.3532 -0.0077 10 6 3.6020 -0.6967 -0.0024 11 7 2.2865 -1.1153 0.0033 12 6 1.8168 -2.5029 0.0070 13 6 1.6627 -2.9773 1.4290 14 1 1.8913 -2.3116 2.2482 15 6 1.2238 -4.2592 1.6844 16 7 0.9450 -5.0697 0.6869 17 14 1.0254 -4.8447 3.4471 18 1 0.0401 -3.9821 4.1473 19 1 0.5447 -6.2498 3.4508 20 1 2.3342 -4.7680 4.1446 21 1 -0.3634 0.0030 1.0276 22 1 -0.3633 0.8885 -0.5165 23 1 -0.3633 -0.8915 -0.5113 24 1 4.7385 2.5097 -0.0145 25 1 6.8758 1.3298 -0.0213 26 1 4.8617 -2.4326 -0.0057 27 1 2.5409 -3.1329 -0.5098 28 1 0.8549 -2.5622 -0.5021 29 1 0.6366 -5.9717 0.8666 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260022261.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:34 Heat of formation + Delta-G solvation = 49.393150 kcal Electronic energy + Delta-G solvation = -15553.857790 eV Core-core repulsion = 12888.906693 eV Total energy + Delta-G solvation = -2664.951097 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.58887 -37.42049 -35.82677 -34.18670 -32.43442 -30.88918 -29.93347 -27.34111 -27.00586 -23.51027 -21.74855 -21.63381 -19.38821 -17.02771 -16.86599 -16.37438 -15.38306 -14.90057 -14.68063 -13.76845 -13.65650 -12.98444 -12.90669 -12.67599 -12.54409 -12.06907 -11.83331 -11.70662 -11.53349 -11.15687 -10.93013 -10.70277 -10.58123 -10.34256 -10.11779 -9.46091 -9.45477 -8.77201 -7.77900 -7.54530 -6.40180 -4.49834 1.26974 1.86003 2.40057 3.14733 3.19215 3.19855 3.28539 3.53847 4.17396 4.19884 4.60106 4.94248 5.03635 5.32442 5.56036 5.66757 5.76068 5.88181 5.90468 5.95043 6.15895 6.32643 6.50602 6.59634 6.80760 6.87784 7.12641 7.29768 7.51488 7.70690 7.85123 8.43787 8.56752 9.18822 10.67259 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.007837 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.437551 B = 3571.872630 C = 4670.048632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.290 3.710 3 N -0.519 5.519 4 C 0.046 3.954 5 C -0.062 4.062 6 C -0.127 4.127 7 C -0.037 4.037 8 Cl -0.081 7.081 9 C -0.078 4.078 10 C 0.059 3.941 11 N -0.453 5.453 12 C 0.236 3.764 13 C -0.546 4.546 14 H 0.064 0.936 15 C 0.070 3.930 16 N -0.888 5.888 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.273 1.273 21 H 0.087 0.913 22 H 0.085 0.915 23 H 0.083 0.917 24 H 0.130 0.870 25 H 0.131 0.869 26 H 0.134 0.866 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.897 7.395 -2.098 9.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.025 3.975 3 N -0.240 5.240 4 C -0.075 4.075 5 C -0.082 4.082 6 C -0.149 4.149 7 C -0.065 4.065 8 Cl -0.052 7.052 9 C -0.099 4.099 10 C -0.054 4.054 11 N -0.137 5.137 12 C 0.117 3.883 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.732 3.268 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.198 1.198 21 H 0.105 0.895 22 H 0.103 0.897 23 H 0.102 0.898 24 H 0.148 0.852 25 H 0.149 0.851 26 H 0.151 0.849 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.580 7.756 -2.151 9.260 hybrid contribution 0.315 -1.528 0.979 1.842 sum 4.894 6.228 -1.171 8.007 Atomic orbital electron populations 1.20301 0.84724 1.03789 1.04179 1.23564 0.95864 0.81087 0.96952 1.70383 1.00394 1.27772 1.25481 1.19152 0.92404 0.90479 1.05510 1.19744 0.88666 0.99302 1.00514 1.20299 0.98060 0.91775 1.04740 1.20256 0.85565 0.92179 1.08508 1.98329 1.29998 1.79675 1.97245 1.19783 0.88032 1.00168 1.01960 1.18625 0.86134 0.94488 1.06184 1.46056 1.03363 1.09878 1.54398 1.19795 0.96759 0.72455 0.99260 1.21229 1.47416 0.98702 0.91045 0.91770 1.24923 0.94287 0.96011 0.98236 1.69903 1.43684 1.07618 1.31284 0.86416 0.78970 0.77830 0.83564 1.19809 1.20827 1.19844 0.89453 0.89658 0.89849 0.85209 0.85147 0.84856 0.93411 0.92810 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.17 36.00 0.37 -0.75 15 2 C 0.29 5.81 7.86 -154.80 -1.22 4.59 15 3 N -0.52 -10.60 11.27 -8.22 -0.09 -10.70 15 4 C 0.05 0.92 7.23 -84.69 -0.61 0.30 15 5 C -0.06 -1.03 10.05 -39.62 -0.40 -1.42 15 6 C -0.13 -1.92 9.74 -39.94 -0.39 -2.31 15 7 C -0.04 -0.61 6.32 -39.45 -0.25 -0.86 15 8 Cl -0.08 -1.19 28.94 -51.86 -1.50 -2.69 15 9 C -0.08 -1.50 9.82 -39.47 -0.39 -1.89 15 10 C 0.06 1.24 6.87 -83.99 -0.58 0.66 15 11 N -0.45 -9.87 2.79 -112.44 -0.31 -10.18 15 12 C 0.24 5.57 5.69 -5.20 -0.03 5.54 15 13 C -0.55 -14.11 9.39 -34.44 -0.32 -14.44 15 14 H 0.06 1.72 7.81 -52.49 -0.41 1.31 15 15 C 0.07 1.81 5.46 -17.82 -0.10 1.71 15 16 N -0.89 -23.81 13.29 55.43 0.74 -23.07 15 17 Si 0.91 20.26 29.54 -169.99 -5.02 15.24 15 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 19 H -0.28 -6.23 7.11 56.52 0.40 -5.82 15 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 15 21 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15 22 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 23 H 0.08 1.28 7.01 -51.93 -0.36 0.91 15 24 H 0.13 1.79 8.06 -52.48 -0.42 1.37 15 25 H 0.13 1.57 8.06 -52.48 -0.42 1.15 15 26 H 0.13 2.59 8.06 -52.48 -0.42 2.17 15 27 H 0.05 1.19 8.14 -51.93 -0.42 0.77 15 28 H 0.05 1.27 6.99 -51.93 -0.36 0.90 15 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 15 LS Contribution 274.46 15.07 4.14 4.14 Total: -1.00 -27.85 274.46 -8.78 -36.63 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: -2.81 Total: -0.50 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -3.91 Total: -8.86 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.33 Total: -43.95 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.50 Total: -2.69 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.85 -8.78 -36.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022261.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.021 kcal (2) G-P(sol) polarization free energy of solvation -27.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds