Wall clock time and date at job start Mon Mar 30 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30104 * 124.95508 * 2 1 4 4 C 1.35802 * 109.64469 * 180.25050 * 3 2 1 5 5 C 1.39742 * 133.57742 * 179.75468 * 4 3 2 6 6 C 1.36588 * 119.90205 * 179.97438 * 5 4 3 7 7 C 1.38876 * 120.65936 * 0.02562 * 6 5 4 8 8 Cl 1.73604 * 119.79045 * 179.97438 * 7 6 5 9 9 C 1.37955 * 120.41929 * 359.97438 * 7 6 5 10 10 C 1.38826 * 119.68505 * 359.97438 * 9 7 6 11 11 N 1.36074 * 124.95178 * 179.82843 * 2 1 3 12 12 C 1.46491 * 126.34740 * 0.02562 * 11 2 1 13 13 C 1.50702 * 109.46957 * 269.68307 * 12 11 2 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 12 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 12 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 H 1.08997 * 109.47680 * 270.16710 * 1 2 3 22 22 H 1.08998 * 109.46844 * 30.16876 * 1 2 3 23 23 H 1.09001 * 109.47050 * 150.16352 * 1 2 3 24 24 H 1.08003 * 120.04932 * 359.97438 * 5 4 3 25 25 H 1.08008 * 119.67155 * 180.02562 * 6 5 4 26 26 H 1.08004 * 120.15967 * 180.02562 * 9 7 6 27 27 H 1.09004 * 109.47166 * 149.68573 * 12 11 2 28 28 H 1.08994 * 109.47507 * 29.68279 * 12 11 2 29 29 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2524 1.0663 0.0000 4 6 3.5622 0.7078 -0.0056 5 6 4.7586 1.4298 -0.0124 6 6 5.9534 0.7679 -0.0164 7 6 5.9939 -0.6202 -0.0144 8 17 7.5251 -1.4384 -0.0202 9 6 4.8252 -1.3532 -0.0077 10 6 3.6020 -0.6967 -0.0024 11 7 2.2865 -1.1153 0.0033 12 6 1.8168 -2.5029 0.0070 13 6 1.6627 -2.9773 1.4290 14 1 1.8913 -2.3116 2.2482 15 6 1.2238 -4.2592 1.6844 16 7 0.9450 -5.0697 0.6869 17 14 1.0254 -4.8447 3.4471 18 1 0.0401 -3.9821 4.1473 19 1 0.5447 -6.2498 3.4508 20 1 2.3342 -4.7680 4.1446 21 1 -0.3634 0.0030 1.0276 22 1 -0.3633 0.8885 -0.5165 23 1 -0.3633 -0.8915 -0.5113 24 1 4.7385 2.5097 -0.0145 25 1 6.8758 1.3298 -0.0213 26 1 4.8617 -2.4326 -0.0057 27 1 2.5409 -3.1329 -0.5098 28 1 0.8549 -2.5622 -0.5021 29 1 0.6366 -5.9717 0.8666 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260022261.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:34 Heat of formation + Delta-G solvation = 35.530774 kcal Electronic energy + Delta-G solvation = -15554.458908 eV Core-core repulsion = 12888.906693 eV Total energy + Delta-G solvation = -2665.552215 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.08725 -38.78762 -37.14616 -35.96190 -34.22707 -32.25610 -31.38956 -29.15790 -28.37448 -25.37222 -23.15573 -23.09902 -20.92647 -18.90740 -18.38233 -17.96641 -16.72005 -16.59843 -16.36726 -15.22732 -15.16535 -14.52308 -14.35924 -14.23998 -13.84977 -13.50062 -13.46449 -13.19804 -13.03127 -12.73413 -12.69294 -12.26649 -12.17191 -11.92281 -11.59357 -11.14746 -11.02383 -10.75165 -9.27343 -8.99005 -8.38115 -6.55827 -0.14832 0.47367 1.07249 1.36675 1.37686 1.46015 1.74100 1.97378 2.31887 2.76873 2.93339 3.22069 3.61169 3.99215 4.17773 4.26796 4.32755 4.44340 4.61417 4.71206 4.76619 4.84623 5.02202 5.11237 5.24819 5.46915 5.51009 5.61540 5.74635 5.78842 6.22070 6.55948 6.91503 7.16620 8.68198 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.007837 C = 0.005994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.437551 B = 3571.872630 C = 4670.048632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.277 3.723 3 N -0.527 5.527 4 C 0.025 3.975 5 C -0.058 4.058 6 C -0.113 4.113 7 C -0.028 4.028 8 Cl -0.060 7.060 9 C -0.105 4.105 10 C 0.028 3.972 11 N -0.470 5.470 12 C 0.253 3.747 13 C -0.557 4.557 14 H 0.050 0.950 15 C 0.029 3.971 16 N -0.914 5.914 17 Si 0.965 3.035 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.275 1.275 21 H 0.093 0.907 22 H 0.113 0.887 23 H 0.082 0.918 24 H 0.162 0.838 25 H 0.172 0.828 26 H 0.118 0.882 27 H 0.025 0.975 28 H 0.050 0.950 29 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 8.646 -1.483 10.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.013 3.987 3 N -0.249 5.249 4 C -0.096 4.096 5 C -0.077 4.077 6 C -0.134 4.134 7 C -0.056 4.056 8 Cl -0.032 7.032 9 C -0.126 4.126 10 C -0.084 4.084 11 N -0.156 5.156 12 C 0.133 3.867 13 C -0.595 4.595 14 H 0.068 0.932 15 C -0.173 4.173 16 N -0.552 5.552 17 Si 0.789 3.211 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.201 1.201 21 H 0.111 0.889 22 H 0.131 0.869 23 H 0.100 0.900 24 H 0.179 0.821 25 H 0.189 0.811 26 H 0.136 0.864 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.489 9.031 -1.542 10.680 hybrid contribution 0.182 -1.870 0.749 2.022 sum 5.670 7.162 -0.794 9.169 Atomic orbital electron populations 1.20447 0.82237 1.05077 1.04902 1.24326 0.97385 0.80503 0.96519 1.70384 1.00825 1.27748 1.25951 1.19656 0.93314 0.90337 1.06258 1.20177 0.87630 1.00832 0.99072 1.20734 0.99273 0.91026 1.02345 1.20462 0.85603 0.93044 1.06515 1.98339 1.28247 1.79553 1.97024 1.19816 0.88775 0.99726 1.04291 1.19034 0.86265 0.95552 1.07505 1.45974 1.04251 1.09359 1.55973 1.19353 0.95781 0.73616 0.97911 1.21351 1.47615 0.98915 0.91613 0.93194 1.25655 0.93792 0.95968 1.01877 1.69982 1.44177 1.07977 1.33045 0.85497 0.78787 0.77752 0.79078 1.19023 1.19891 1.20075 0.88873 0.86888 0.89965 0.82085 0.81070 0.86387 0.95673 0.93181 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.12 10.17 71.23 0.72 -1.40 15 2 C 0.28 11.18 7.86 137.91 1.08 12.27 15 3 N -0.53 -21.32 11.27 -179.93 -2.03 -23.35 15 4 C 0.02 0.97 7.23 39.44 0.29 1.26 15 5 C -0.06 -1.74 10.05 22.25 0.22 -1.52 15 6 C -0.11 -3.06 9.74 22.04 0.21 -2.84 15 7 C -0.03 -0.88 6.32 22.36 0.14 -0.74 15 8 Cl -0.06 -1.66 28.94 -2.72 -0.08 -1.74 15 9 C -0.10 -4.09 9.82 22.34 0.22 -3.87 15 10 C 0.03 1.21 6.87 38.86 0.27 1.47 15 11 N -0.47 -21.12 2.79 -509.65 -1.42 -22.54 15 12 C 0.25 12.46 5.69 85.64 0.49 12.95 15 13 C -0.56 -29.52 9.39 25.60 0.24 -29.28 15 14 H 0.05 2.74 7.81 -2.91 -0.02 2.72 15 15 C 0.03 1.52 5.46 84.66 0.46 1.98 15 16 N -0.91 -49.65 13.29 21.45 0.28 -49.36 15 17 Si 0.96 41.50 29.54 68.60 2.03 43.53 15 18 H -0.27 -11.05 7.11 99.48 0.71 -10.34 15 19 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 20 H -0.28 -11.87 7.11 99.48 0.71 -11.17 15 21 H 0.09 2.75 8.14 -2.39 -0.02 2.73 15 22 H 0.11 2.80 8.14 -2.39 -0.02 2.78 15 23 H 0.08 2.53 7.01 -2.39 -0.02 2.52 15 24 H 0.16 3.82 8.06 -2.91 -0.02 3.80 15 25 H 0.17 3.26 8.06 -2.91 -0.02 3.23 15 26 H 0.12 4.84 8.06 -2.91 -0.02 4.81 15 27 H 0.03 1.33 8.14 -2.38 -0.02 1.31 15 28 H 0.05 2.46 6.99 -2.39 -0.02 2.44 15 29 H 0.27 14.01 8.31 -92.70 -0.77 13.24 15 Total: -1.00 -60.03 274.46 4.30 -55.73 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.17 Total: 7.46 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 4.35 Total: -9.72 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -3.16 Total: -95.25 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 17 Polarization: -1.66 SS G_CDS: -0.08 Total: -1.74 kcal Total: -60.03 4.30 -55.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260022261.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.259 kcal (2) G-P(sol) polarization free energy of solvation -60.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds