Wall clock time and date at job start Mon Mar 30 2020 06:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30967 * 125.29903 * 2 1 4 4 C 1.33419 * 109.88039 * 180.02562 * 3 2 1 5 5 Cl 1.73597 * 126.27468 * 179.97438 * 4 3 2 6 6 C 1.38062 * 107.44355 * 359.97438 * 4 3 2 7 7 C 1.40938 * 133.72940 * 180.02562 * 6 4 3 8 8 C 1.50703 * 120.41007 * 359.95531 * 7 6 4 9 9 C 1.50701 * 109.47064 * 84.99742 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99594 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99875 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47061 * 90.00257 * 13 11 9 15 15 H 1.48497 * 109.46906 * 209.99430 * 13 11 9 16 16 H 1.48498 * 109.47403 * 329.99876 * 13 11 9 17 17 C 1.35881 * 119.18072 * 180.22807 * 7 6 4 18 18 C 1.40837 * 119.79069 * 359.53072 * 17 7 6 19 19 C 1.34648 * 120.62763 * 0.45571 * 18 17 7 20 20 N 1.34977 * 125.30781 * 180.02562 * 2 1 3 21 21 H 1.09005 * 109.47100 * 89.97815 * 1 2 3 22 22 H 1.09000 * 109.47084 * 209.97553 * 1 2 3 23 23 H 1.08995 * 109.47606 * 329.97789 * 1 2 3 24 24 H 1.09002 * 109.47152 * 324.99835 * 8 7 6 25 25 H 1.09001 * 109.46980 * 204.99935 * 8 7 6 26 26 H 0.97002 * 119.99739 * 180.02562 * 12 11 9 27 27 H 1.07997 * 120.10458 * 179.74662 * 17 7 6 28 28 H 1.08002 * 119.68957 * 180.23227 * 18 17 7 29 29 H 1.08010 * 119.72690 * 179.77673 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2637 1.0689 0.0000 4 6 3.5499 0.7142 -0.0006 5 17 4.9121 1.7902 -0.0014 6 6 3.5987 -0.6656 -0.0003 7 6 4.6509 -1.6032 -0.0002 8 6 6.0851 -1.1404 -0.0014 9 6 6.5259 -0.8672 1.4136 10 1 5.8366 -1.0144 2.2319 11 6 7.8095 -0.4303 1.6636 12 7 8.1943 -0.1923 2.8984 13 14 9.0019 -0.1764 0.2483 14 1 8.8900 1.2184 -0.2492 15 1 10.3884 -0.4242 0.7187 16 1 8.6754 -1.1213 -0.8498 17 6 4.3563 -2.9297 -0.0047 18 6 3.0114 -3.3478 0.0006 19 6 2.0124 -2.4450 0.0009 20 7 2.2871 -1.1015 -0.0005 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3634 0.8897 0.5141 24 1 6.1721 -0.2281 -0.5916 25 1 6.7167 -1.9155 -0.4355 26 1 9.0972 0.1154 3.0743 27 1 5.1509 -3.6611 -0.0089 28 1 2.7791 -4.4025 0.0008 29 1 0.9862 -2.7818 0.0013 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260030525.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:46 Heat of formation + Delta-G solvation = 53.562862 kcal Electronic energy + Delta-G solvation = -15822.749495 eV Core-core repulsion = 13157.979210 eV Total energy + Delta-G solvation = -2664.770285 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.82177 -38.63906 -37.54014 -35.84404 -34.29806 -32.40467 -32.07054 -29.44218 -27.30279 -25.31373 -23.56514 -23.27555 -21.13978 -18.96880 -18.41605 -17.88062 -17.16066 -16.59883 -16.36371 -15.63944 -15.12419 -14.65978 -14.37448 -13.97639 -13.82721 -13.56396 -13.45534 -13.26980 -12.98097 -12.59958 -12.38298 -11.99820 -11.89448 -11.87225 -11.59816 -11.16782 -10.93487 -10.72279 -10.18608 -8.26821 -8.21677 -6.27114 -0.06626 0.25462 0.97366 1.34868 1.36280 1.45924 1.75983 1.84231 2.36146 2.50417 3.10521 3.45601 3.71340 3.76513 3.90526 4.11802 4.23665 4.54355 4.74529 4.78446 4.90957 4.96345 5.01315 5.09235 5.20396 5.27573 5.55694 5.61704 5.76092 6.27305 6.27843 6.67889 6.74735 7.34269 8.91709 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.026609 B = 0.008718 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.041640 B = 3211.099473 C = 3874.981029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.169 3.831 3 N -0.481 5.481 4 C 0.019 3.981 5 Cl -0.010 7.010 6 C 0.018 3.982 7 C -0.032 4.032 8 C 0.022 3.978 9 C -0.490 4.490 10 H 0.024 0.976 11 C 0.021 3.979 12 N -0.948 5.948 13 Si 0.926 3.074 14 H -0.274 1.274 15 H -0.281 1.281 16 H -0.239 1.239 17 C -0.137 4.137 18 C -0.112 4.112 19 C 0.022 3.978 20 N -0.362 5.362 21 H 0.101 0.899 22 H 0.105 0.895 23 H 0.094 0.906 24 H 0.032 0.968 25 H 0.043 0.957 26 H 0.265 0.735 27 H 0.147 0.853 28 H 0.196 0.804 29 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.420 -6.919 -9.249 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.087 4.087 3 N -0.198 5.198 4 C -0.140 4.140 5 Cl 0.018 6.982 6 C -0.093 4.093 7 C -0.034 4.034 8 C -0.016 4.016 9 C -0.528 4.528 10 H 0.042 0.958 11 C -0.176 4.176 12 N -0.589 5.589 13 Si 0.749 3.251 14 H -0.199 1.199 15 H -0.207 1.207 16 H -0.162 1.162 17 C -0.158 4.158 18 C -0.132 4.132 19 C -0.095 4.095 20 N -0.033 5.033 21 H 0.119 0.881 22 H 0.124 0.876 23 H 0.113 0.887 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.164 0.836 28 H 0.213 0.787 29 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -15.624 -5.961 -9.154 19.064 hybrid contribution 1.719 0.107 0.067 1.724 sum -13.905 -5.854 -9.087 17.612 Atomic orbital electron populations 1.20397 0.79811 1.05758 1.05276 1.24036 0.97303 0.78085 1.09246 1.69507 1.00754 1.30246 1.19323 1.20780 0.88908 0.87735 1.16618 1.98340 1.38360 1.64190 1.97346 1.19009 0.85708 0.93340 1.11291 1.19570 0.94419 0.92884 0.96514 1.18690 0.88869 0.97460 0.96589 1.20773 0.96919 1.44004 0.91149 0.95808 1.25678 0.99750 0.94555 0.97635 1.70034 1.19459 1.48066 1.21339 0.86011 0.78376 0.79825 0.80838 1.19906 1.20679 1.16172 1.21331 0.98603 0.94289 1.01531 1.21354 0.90360 1.02054 0.99396 1.22449 1.03645 0.78149 1.05300 1.42886 1.06036 1.07931 1.46463 0.88062 0.87609 0.88744 0.95024 0.93927 0.92593 0.83557 0.78745 0.76627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.91 10.33 71.23 0.74 -0.18 15 2 C 0.17 5.25 7.96 138.01 1.10 6.35 15 3 N -0.48 -19.31 11.20 -177.03 -1.98 -21.30 15 4 C 0.02 0.85 7.82 84.41 0.66 1.51 15 5 Cl -0.01 -0.49 26.73 -2.72 -0.07 -0.56 15 6 C 0.02 0.76 6.65 38.76 0.26 1.02 15 7 C -0.03 -1.34 5.09 -19.75 -0.10 -1.44 15 8 C 0.02 1.04 3.63 29.10 0.11 1.14 15 9 C -0.49 -28.28 9.51 25.60 0.24 -28.04 15 10 H 0.02 1.55 7.98 -2.91 -0.02 1.53 15 11 C 0.02 1.22 5.47 84.66 0.46 1.69 15 12 N -0.95 -60.00 13.96 21.45 0.30 -59.70 15 13 Si 0.93 44.48 27.47 68.60 1.88 46.37 15 14 H -0.27 -13.04 7.11 99.48 0.71 -12.34 15 15 H -0.28 -13.17 7.11 99.48 0.71 -12.47 15 16 H -0.24 -10.40 6.54 99.48 0.65 -9.75 15 17 C -0.14 -4.42 9.70 22.36 0.22 -4.20 15 18 C -0.11 -2.47 9.97 22.08 0.22 -2.25 15 19 C 0.02 0.49 10.80 83.04 0.90 1.38 15 20 N -0.36 -11.60 2.95 -337.75 -1.00 -12.60 15 21 H 0.10 1.29 8.14 -2.38 -0.02 1.27 15 22 H 0.11 1.09 8.04 -2.39 -0.02 1.07 15 23 H 0.09 1.57 8.14 -2.39 -0.02 1.55 15 24 H 0.03 1.55 5.60 -2.39 -0.01 1.54 15 25 H 0.04 1.93 7.11 -2.39 -0.02 1.91 15 26 H 0.27 15.73 8.31 -92.71 -0.77 14.96 15 27 H 0.15 4.29 8.06 -2.91 -0.02 4.26 15 28 H 0.20 2.27 8.06 -2.91 -0.02 2.25 15 29 H 0.22 2.11 7.98 -2.91 -0.02 2.09 15 Total: -1.00 -77.99 267.40 5.04 -72.95 By element: Atomic # 1 Polarization: -3.25 SS G_CDS: 1.11 Total: -2.14 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 4.80 Total: -23.02 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -2.68 Total: -93.60 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.88 Total: 46.37 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.07 Total: -0.56 kcal Total: -77.99 5.04 -72.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260030525.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.509 kcal (2) G-P(sol) polarization free energy of solvation -77.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds