Wall clock time and date at job start Mon Mar 30 2020 05:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37525 * 119.66419 * 2 1 4 4 C 1.38292 * 120.94025 * 179.97438 * 3 2 1 5 5 C 1.38647 * 119.28481 * 0.02736 * 4 3 2 6 6 C 1.36827 * 119.84148 * 0.02562 * 5 4 3 7 7 C 1.39768 * 122.26340 * 359.95762 * 6 5 4 8 8 C 1.47598 * 114.68883 * 179.97438 * 7 6 5 9 9 C 1.40940 * 120.91235 * 180.27551 * 8 7 6 10 10 H 1.08007 * 119.99723 * 320.44383 * 9 8 7 11 11 C 1.40014 * 120.00051 * 140.44240 * 9 8 7 12 12 N 1.30791 * 120.00270 * 3.51963 * 11 9 8 13 13 Si 1.86797 * 120.00201 * 183.52371 * 11 9 8 14 14 H 1.48508 * 109.47266 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47505 * 120.00005 * 13 11 9 16 16 H 1.48506 * 109.47369 * 240.00052 * 13 11 9 17 17 C 1.35829 * 118.17767 * 0.02562 * 8 7 6 18 18 S 1.77395 * 133.36685 * 179.97438 * 6 5 4 19 19 O 1.42101 * 107.67765 * 68.09802 * 18 6 5 20 20 O 1.42105 * 107.70924 * 291.90951 * 18 6 5 21 21 H 1.09003 * 109.46958 * 262.93751 * 1 2 3 22 22 H 1.09002 * 109.46944 * 22.93633 * 1 2 3 23 23 H 1.08996 * 109.47255 * 142.93633 * 1 2 3 24 24 H 1.07997 * 119.52583 * 0.02562 * 3 2 1 25 25 H 1.08004 * 120.36039 * 179.97438 * 4 3 2 26 26 H 1.08004 * 120.08239 * 180.02562 * 5 4 3 27 27 H 0.96996 * 120.00667 * 179.97438 * 12 11 9 28 28 H 1.08001 * 128.11253 * 179.97438 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1877 1.1950 0.0000 4 6 3.5702 1.2258 0.0005 5 6 4.2752 0.0319 0.0005 6 6 3.5994 -1.1578 -0.0006 7 6 2.2032 -1.2228 -0.0008 8 6 1.6498 -2.5911 -0.0026 9 6 0.2573 -2.8089 -0.0089 10 1 -0.3903 -2.1795 0.5835 11 6 -0.2864 -3.8411 -0.7831 12 7 0.5025 -4.6464 -1.4462 13 14 -2.1385 -4.0680 -0.8690 14 1 -2.8031 -3.0348 -0.0346 15 1 -2.5891 -3.9324 -2.2775 16 1 -2.4960 -5.4176 -0.3628 17 6 2.5192 -3.6346 -0.0034 18 16 4.1191 -2.8539 -0.0016 19 8 4.7279 -3.1194 1.2546 20 8 4.7292 -3.1183 -1.2575 21 1 -0.3633 -0.1264 1.0199 22 1 -0.3633 0.9464 -0.4005 23 1 -0.3633 -0.8200 -0.6193 24 1 1.6345 2.1226 0.0004 25 1 4.0952 2.1697 0.0001 26 1 5.3552 0.0410 0.0013 27 1 0.1260 -5.3617 -1.9822 28 1 2.2930 -4.6907 -0.0043 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260041187.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:11 Heat of formation + Delta-G solvation = -51.169108 kcal Electronic energy + Delta-G solvation = -16087.285160 eV Core-core repulsion = 13387.724312 eV Total energy + Delta-G solvation = -2699.560848 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.63222 -37.87887 -37.04866 -36.57351 -34.31336 -33.78079 -30.49506 -28.70804 -27.00335 -24.29675 -22.91168 -21.68277 -19.64934 -18.97483 -17.69121 -17.39136 -16.66114 -16.44773 -16.37773 -15.67476 -14.91470 -14.77325 -14.63653 -13.90284 -13.51581 -13.39585 -13.19475 -13.19289 -13.06508 -12.99447 -12.88958 -12.52856 -12.11527 -12.02972 -11.48890 -11.36519 -10.75864 -10.73310 -10.02923 -9.14216 -8.73963 -6.83807 -0.38456 -0.27212 0.22280 1.23592 1.37716 1.54917 1.70442 2.13557 2.46763 2.63585 2.78989 3.01861 3.74038 3.83205 4.03273 4.20126 4.32849 4.37025 4.62501 4.84380 4.88284 4.94662 5.04855 5.15501 5.29803 5.39763 5.53870 5.61738 5.91642 6.02907 6.14384 6.55341 6.69991 8.20588 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022111 B = 0.010880 C = 0.007791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.057834 B = 2572.860091 C = 3593.206488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.077 4.077 3 C -0.079 4.079 4 C -0.123 4.123 5 C -0.029 4.029 6 C -0.646 4.646 7 C -0.047 4.047 8 C 0.099 3.901 9 C -0.430 4.430 10 H 0.116 0.884 11 C 0.016 3.984 12 N -0.799 5.799 13 Si 0.995 3.005 14 H -0.236 1.236 15 H -0.264 1.264 16 H -0.269 1.269 17 C -0.822 4.822 18 S 2.535 3.465 19 O -0.999 6.999 20 O -1.005 7.005 21 H 0.077 0.923 22 H 0.090 0.910 23 H 0.078 0.922 24 H 0.173 0.827 25 H 0.180 0.820 26 H 0.150 0.850 27 H 0.293 0.707 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.930 11.543 1.187 12.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.078 4.078 3 C -0.096 4.096 4 C -0.142 4.142 5 C -0.048 4.048 6 C -0.735 4.735 7 C -0.049 4.049 8 C 0.093 3.907 9 C -0.458 4.458 10 H 0.134 0.866 11 C -0.202 4.202 12 N -0.422 5.422 13 Si 0.813 3.187 14 H -0.158 1.158 15 H -0.189 1.189 16 H -0.194 1.194 17 C -0.943 4.943 18 S 2.727 3.273 19 O -0.997 6.997 20 O -1.002 7.002 21 H 0.096 0.904 22 H 0.109 0.891 23 H 0.097 0.903 24 H 0.190 0.810 25 H 0.197 0.803 26 H 0.168 0.832 27 H 0.104 0.896 28 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.943 10.972 1.027 11.406 hybrid contribution -1.118 -0.670 -0.314 1.340 sum -4.061 10.302 0.713 11.097 Atomic orbital electron populations 1.21237 0.89362 1.04313 1.03327 1.20412 0.98012 0.91057 0.98343 1.21544 0.95002 0.97622 0.95469 1.21904 0.94439 0.98482 0.99362 1.20463 1.00744 0.90092 0.93539 1.30333 1.04793 1.20597 1.17798 1.20251 0.91924 0.95319 0.97378 1.17956 0.97013 0.87519 0.88232 1.20277 0.91834 1.12068 1.21609 0.86610 1.27226 1.06418 0.93168 0.93349 1.69972 1.40168 1.12126 1.19969 0.84959 0.74087 0.79927 0.79713 1.15802 1.18856 1.19404 1.31216 1.13624 1.05392 1.44061 1.03005 0.76207 0.75377 0.72757 1.93420 1.77874 1.84804 1.43558 1.93420 1.78194 1.84672 1.43961 0.90414 0.89085 0.90317 0.80980 0.80262 0.83246 0.89644 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 8.41 71.24 0.60 -3.16 15 2 C -0.08 -2.73 5.93 -19.43 -0.12 -2.84 15 3 C -0.08 -2.09 9.57 22.11 0.21 -1.88 15 4 C -0.12 -3.18 10.11 22.38 0.23 -2.95 15 5 C -0.03 -1.00 10.01 22.04 0.22 -0.78 15 6 C -0.65 -28.40 6.48 22.31 0.14 -28.25 15 7 C -0.05 -2.14 5.97 -19.83 -0.12 -2.26 15 8 C 0.10 5.13 5.50 -20.70 -0.11 5.01 15 9 C -0.43 -20.83 6.73 23.36 0.16 -20.67 15 10 H 0.12 4.92 5.70 -2.91 -0.02 4.91 15 11 C 0.02 0.77 5.43 85.28 0.46 1.23 15 12 N -0.80 -41.62 11.18 21.84 0.24 -41.38 15 13 Si 0.99 34.42 29.56 68.60 2.03 36.45 15 14 H -0.24 -7.31 7.11 99.48 0.71 -6.60 15 15 H -0.26 -8.84 7.11 99.48 0.71 -8.13 15 16 H -0.27 -9.27 7.11 99.48 0.71 -8.56 15 17 C -0.82 -45.74 9.90 67.26 0.67 -45.07 15 18 S 2.53 128.91 5.99 -56.49 -0.34 128.57 15 19 O -1.00 -53.30 18.01 -128.19 -2.31 -55.61 15 20 O -1.01 -55.52 18.01 -128.19 -2.31 -57.83 15 21 H 0.08 2.16 7.82 -2.39 -0.02 2.15 15 22 H 0.09 1.96 8.00 -2.39 -0.02 1.95 15 23 H 0.08 2.73 5.55 -2.39 -0.01 2.71 15 24 H 0.17 2.89 8.03 -2.91 -0.02 2.87 15 25 H 0.18 2.78 8.06 -2.91 -0.02 2.75 15 26 H 0.15 4.15 8.06 -2.91 -0.02 4.13 15 27 H 0.29 13.66 8.30 -92.71 -0.77 12.90 15 28 H 0.15 8.89 7.03 -2.91 -0.02 8.87 15 Total: -1.00 -72.35 254.64 0.85 -71.50 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 1.19 Total: 19.92 kcal Atomic # 6 Polarization: -103.97 SS G_CDS: 2.34 Total: -101.63 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.24 Total: -41.38 kcal Atomic # 8 Polarization: -108.82 SS G_CDS: -4.62 Total: -113.44 kcal Atomic # 14 Polarization: 34.42 SS G_CDS: 2.03 Total: 36.45 kcal Atomic # 16 Polarization: 128.91 SS G_CDS: -0.34 Total: 128.57 kcal Total: -72.35 0.85 -71.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260041187.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.329 kcal (2) G-P(sol) polarization free energy of solvation -72.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds