Wall clock time and date at job start Mon Mar 30 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46876 * 2 1 4 4 C 1.50700 * 109.47013 * 240.00663 * 2 1 3 5 5 H 1.07997 * 120.00084 * 239.99923 * 4 2 1 6 6 C 1.37877 * 120.00235 * 59.99916 * 4 2 1 7 7 N 1.31513 * 120.00070 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00210 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47163 * 59.99978 * 8 6 4 10 10 H 1.48504 * 109.47307 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47293 * 300.00091 * 8 6 4 12 12 C 1.50694 * 109.47276 * 120.00693 * 2 1 3 13 13 C 1.38964 * 119.68926 * 59.99817 * 12 2 1 14 14 C 1.36593 * 120.81543 * 180.02562 * 13 12 2 15 15 C 1.39295 * 119.84677 * 359.97438 * 14 13 12 16 16 N 1.37042 * 133.83329 * 180.02562 * 15 14 13 17 17 H 0.97001 * 125.45012 * 359.94922 * 16 15 14 18 18 N 1.39872 * 109.09560 * 180.22503 * 16 15 14 19 19 C 1.30309 * 110.07736 * 359.59331 * 18 16 15 20 20 Cl 1.73601 * 126.11311 * 180.12641 * 19 18 16 21 21 C 1.40806 * 119.41927 * 359.97438 * 15 14 13 22 22 C 1.36477 * 119.68464 * 239.97873 * 12 2 1 23 23 H 1.08999 * 109.47398 * 299.99821 * 1 2 3 24 24 H 1.09003 * 109.47012 * 59.99555 * 1 2 3 25 25 H 1.08997 * 109.47232 * 179.97438 * 1 2 3 26 26 H 0.97005 * 120.00609 * 179.97438 * 7 6 4 27 27 H 1.07998 * 119.59060 * 0.02562 * 13 12 2 28 28 H 1.07999 * 120.07324 * 179.97438 * 14 13 12 29 29 H 1.07999 * 120.17994 * 0.02562 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1316 6 6 1.6992 -0.2391 -2.4828 7 7 0.9427 0.8299 -2.6034 8 14 2.3225 -1.1191 -4.0081 9 1 1.8280 -2.5194 -4.0084 10 1 1.8268 -0.4194 -5.2205 11 1 3.8074 -1.1185 -4.0079 12 6 2.0324 -0.7105 1.2303 13 6 1.6927 -2.0410 1.4437 14 6 2.1349 -2.7071 2.5512 15 6 2.9369 -2.0499 3.4813 16 7 3.5261 -2.4257 4.6601 17 1 3.4628 -3.3046 5.0656 18 7 4.2280 -1.3372 5.1883 19 6 4.1153 -0.3067 4.3987 20 17 4.8230 1.2582 4.6516 21 6 3.2830 -0.7021 3.2663 22 6 2.8170 -0.0413 2.1243 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.7087 1.1616 -3.4844 27 1 1.0715 -2.5547 0.7250 28 1 1.8633 -3.7410 2.7052 29 1 3.0765 0.9927 1.9513 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260049928.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:09 Heat of formation + Delta-G solvation = 53.178378 kcal Electronic energy + Delta-G solvation = -15394.494639 eV Core-core repulsion = 12729.707682 eV Total energy + Delta-G solvation = -2664.786957 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.28352 -38.93061 -37.88751 -35.70208 -33.42477 -32.60278 -30.86678 -29.21462 -27.12859 -24.06194 -23.98324 -22.80968 -21.34344 -18.92955 -18.29923 -17.36547 -16.71057 -16.18954 -16.14957 -16.03199 -14.90643 -14.71075 -14.38606 -13.70923 -13.51029 -13.25704 -13.00799 -12.85859 -12.76418 -12.42132 -12.29787 -12.09488 -12.01780 -11.66294 -11.26010 -11.04856 -10.82506 -10.40283 -9.61525 -8.78700 -8.03033 -6.16871 -0.10526 0.36462 0.59358 1.23883 1.47169 1.47999 1.55103 1.94376 2.47594 2.89921 3.24803 3.45710 3.72929 4.07058 4.20183 4.46491 4.57673 4.77128 4.95633 5.10202 5.16500 5.18511 5.33102 5.51890 5.58897 5.73991 5.86854 6.11962 6.14897 6.25768 6.42406 6.44448 6.92079 7.51003 9.00659 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.029116 B = 0.005841 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.455599 B = 4792.514815 C = 5135.525741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.074 3.926 3 H 0.004 0.996 4 C -0.518 4.518 5 H 0.055 0.945 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.287 1.287 11 H -0.276 1.276 12 C -0.081 4.081 13 C -0.054 4.054 14 C -0.131 4.131 15 C 0.118 3.882 16 N -0.482 5.482 17 H 0.459 0.541 18 N -0.248 5.248 19 C 0.131 3.869 20 Cl 0.027 6.973 21 C -0.179 4.179 22 C -0.066 4.066 23 H 0.023 0.977 24 H 0.058 0.942 25 H 0.038 0.962 26 H 0.260 0.740 27 H 0.136 0.864 28 H 0.163 0.837 29 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.325 -5.762 12.405 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.056 3.944 3 H 0.023 0.977 4 C -0.556 4.556 5 H 0.073 0.927 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.776 3.224 9 H -0.193 1.193 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.083 4.083 13 C -0.075 4.075 14 C -0.153 4.153 15 C 0.003 3.997 16 N -0.204 5.204 17 H 0.308 0.692 18 N -0.067 5.067 19 C -0.072 4.072 20 Cl 0.055 6.945 21 C -0.188 4.188 22 C -0.086 4.086 23 H 0.042 0.958 24 H 0.076 0.924 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.154 0.846 28 H 0.181 0.819 29 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.816 -5.949 13.390 15.141 hybrid contribution 0.020 0.064 -1.502 1.504 sum 3.836 -5.885 11.887 13.808 Atomic orbital electron populations 1.21640 0.97239 0.99574 0.99626 1.17711 0.93231 0.93961 0.89490 0.97747 1.21366 1.30926 1.12392 0.90958 0.92660 1.25664 0.95313 0.95663 1.01637 1.70005 1.37639 1.24065 1.23949 0.85734 0.78600 0.79023 0.79031 1.19299 1.21315 1.20154 1.19993 0.97101 0.95160 0.96023 1.20856 0.97202 0.93540 0.95897 1.20065 1.00461 1.01440 0.93320 1.18809 0.97726 0.93586 0.89617 1.45543 1.44618 1.12048 1.18179 0.69157 1.76361 1.15221 0.94410 1.20755 1.23803 0.99217 0.90106 0.94031 1.98389 1.81656 1.18074 1.96389 1.19580 1.06061 0.95089 0.98039 1.20242 0.96866 0.99745 0.91784 0.95774 0.92351 0.94332 0.93040 0.84637 0.81910 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.78 71.98 0.63 -5.06 15 2 C 0.07 3.61 2.46 -12.29 -0.03 3.57 15 3 H 0.00 0.23 7.84 -2.39 -0.02 0.22 15 4 C -0.52 -27.15 8.23 25.60 0.21 -26.94 15 5 H 0.06 2.85 7.60 -2.91 -0.02 2.82 15 6 C 0.02 0.85 5.30 84.65 0.45 1.30 15 7 N -0.92 -51.42 11.32 21.45 0.24 -51.18 15 8 Si 0.95 42.27 29.54 68.60 2.03 44.30 15 9 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 10 H -0.29 -12.69 7.11 99.48 0.71 -11.98 15 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 12 C -0.08 -3.30 4.70 -20.10 -0.09 -3.40 15 13 C -0.05 -1.87 8.61 22.06 0.19 -1.68 15 14 C -0.13 -3.63 10.03 22.14 0.22 -3.40 15 15 C 0.12 3.46 7.33 39.21 0.29 3.75 15 16 N -0.48 -11.89 7.37 -51.53 -0.38 -12.27 15 17 H 0.46 7.44 8.96 -213.47 -1.91 5.52 15 18 N -0.25 -7.20 12.55 -45.94 -0.58 -7.77 15 19 C 0.13 4.05 8.09 86.93 0.70 4.75 15 20 Cl 0.03 0.73 29.33 -2.72 -0.08 0.65 15 21 C -0.18 -6.10 6.37 -20.23 -0.13 -6.23 15 22 C -0.07 -2.50 9.67 22.27 0.22 -2.29 15 23 H 0.02 0.99 8.14 -2.39 -0.02 0.97 15 24 H 0.06 3.02 6.07 -2.39 -0.01 3.01 15 25 H 0.04 1.65 7.36 -2.39 -0.02 1.63 15 26 H 0.26 14.00 8.31 -92.70 -0.77 13.23 15 27 H 0.14 4.58 7.53 -2.91 -0.02 4.56 15 28 H 0.16 3.12 8.06 -2.91 -0.02 3.10 15 29 H 0.12 4.51 7.91 -2.91 -0.02 4.49 15 Total: -1.00 -59.68 268.78 3.17 -56.51 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -0.72 Total: 5.39 kcal Atomic # 6 Polarization: -38.28 SS G_CDS: 2.66 Total: -35.63 kcal Atomic # 7 Polarization: -70.51 SS G_CDS: -0.71 Total: -71.22 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 17 Polarization: 0.73 SS G_CDS: -0.08 Total: 0.65 kcal Total: -59.68 3.17 -56.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260049928.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.690 kcal (2) G-P(sol) polarization free energy of solvation -59.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds