Wall clock time and date at job start Mon Mar 30 2020 06:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31522 * 119.99817 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00071 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.46966 * 60.00398 * 8 6 4 10 10 H 1.48503 * 109.46926 * 179.97438 * 8 6 4 11 11 H 1.48492 * 109.47227 * 300.00019 * 8 6 4 12 12 C 1.50699 * 109.46866 * 239.99781 * 2 1 3 13 13 C 1.38973 * 119.68705 * 299.99914 * 12 2 1 14 14 C 1.36587 * 120.81065 * 179.97438 * 13 12 2 15 15 C 1.39287 * 119.85350 * 0.02637 * 14 13 12 16 16 N 1.37047 * 133.83846 * 179.97438 * 15 14 13 17 17 H 0.96993 * 125.44721 * 0.02959 * 16 15 14 18 18 N 1.39870 * 109.09803 * 180.02562 * 16 15 14 19 19 C 1.30313 * 110.07980 * 0.02562 * 18 16 15 20 20 Cl 1.73595 * 126.11625 * 179.97438 * 19 18 16 21 21 C 1.40815 * 119.41529 * 359.97438 * 15 14 13 22 22 C 1.36470 * 119.68623 * 119.72702 * 12 2 1 23 23 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 24 24 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 26 26 H 0.96991 * 120.00052 * 179.97438 * 7 6 4 27 27 H 1.07998 * 119.59077 * 359.97438 * 13 12 2 28 28 H 1.08005 * 120.07454 * 179.97438 * 14 13 12 29 29 H 1.07996 * 120.18353 * 0.02562 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3226 -1.1195 4.0080 9 1 3.8076 -1.1188 4.0077 10 1 1.8280 -0.4191 5.2204 11 1 1.8282 -2.5197 4.0082 12 6 2.0323 -0.7105 -1.2304 13 6 1.6926 -2.0410 -1.4438 14 6 2.1347 -2.7070 -2.5514 15 6 2.9366 -2.0498 -3.4815 16 7 3.5257 -2.4255 -4.6605 17 1 3.4627 -3.3044 -5.0658 18 7 4.2323 -1.3387 -5.1857 19 6 4.1161 -0.3068 -4.3983 20 17 4.8253 1.2575 -4.6502 21 6 3.2818 -0.7016 -3.2670 22 6 2.8119 -0.0395 -2.1274 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7082 1.1609 3.4843 27 1 1.0714 -2.5547 -0.7251 28 1 1.8638 -3.7411 -2.7051 29 1 3.0682 0.9956 -1.9565 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260049935.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:11 Heat of formation + Delta-G solvation = 68.499884 kcal Electronic energy + Delta-G solvation = -15393.776298 eV Core-core repulsion = 12729.653732 eV Total energy + Delta-G solvation = -2664.122567 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.00009 -37.49056 -36.71381 -33.93030 -32.01311 -30.90430 -29.56023 -27.69219 -25.14264 -22.69715 -22.43647 -21.54092 -19.74647 -17.61330 -16.56757 -15.78585 -15.12986 -14.91368 -14.80983 -14.38593 -13.42678 -13.33711 -12.63386 -12.23327 -12.03332 -11.67144 -11.63562 -11.25950 -10.99731 -10.85589 -10.70898 -10.52545 -10.29298 -10.09985 -9.69653 -9.50911 -8.99932 -8.39534 -8.27775 -7.41287 -6.03256 -4.10485 1.21009 1.53769 1.98143 2.52901 3.11381 3.29939 3.35034 3.37729 4.25921 4.43985 4.73864 4.98879 5.27654 5.36538 5.55775 5.75786 5.98771 6.26333 6.39421 6.50341 6.80987 6.86382 7.03103 7.10769 7.26693 7.28472 7.49994 7.58942 7.69512 7.92242 8.06940 8.35957 8.91828 9.54463 11.02164 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.029105 B = 0.005841 C = 0.005451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.802898 B = 4792.351478 C = 5135.059358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.074 3.926 3 H 0.037 0.963 4 C -0.510 4.510 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.060 4.060 13 C -0.041 4.041 14 C -0.154 4.154 15 C 0.115 3.885 16 N -0.502 5.502 17 H 0.440 0.560 18 N -0.248 5.248 19 C 0.141 3.859 20 Cl 0.012 6.988 21 C -0.162 4.162 22 C -0.058 4.058 23 H 0.009 0.991 24 H 0.028 0.972 25 H 0.086 0.914 26 H 0.262 0.738 27 H 0.135 0.865 28 H 0.121 0.879 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.832 -3.798 -11.292 12.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.056 3.944 3 H 0.055 0.945 4 C -0.548 4.548 5 H 0.075 0.925 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.720 3.280 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.061 4.061 13 C -0.062 4.062 14 C -0.176 4.176 15 C 0.002 3.998 16 N -0.221 5.221 17 H 0.285 0.715 18 N -0.067 5.067 19 C -0.061 4.061 20 Cl 0.040 6.960 21 C -0.170 4.170 22 C -0.079 4.079 23 H 0.028 0.972 24 H 0.047 0.953 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.152 0.848 28 H 0.139 0.861 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.320 -3.959 -12.245 13.291 hybrid contribution 0.126 -0.552 1.273 1.393 sum 3.446 -4.511 -10.973 12.354 Atomic orbital electron populations 1.21804 0.97619 0.99273 1.00400 1.17869 0.92845 0.95506 0.88191 0.94506 1.21063 1.31350 1.12501 0.89874 0.92491 1.24946 0.94996 0.94963 0.98906 1.69869 1.36487 1.22797 1.23581 0.86657 0.79289 0.79744 0.82328 1.20261 1.21312 1.20269 1.20273 0.95308 0.93896 0.96635 1.20860 0.96306 0.94421 0.94583 1.19792 1.02597 0.99982 0.95211 1.18669 0.98041 0.94090 0.89014 1.45510 1.45771 1.11659 1.19174 0.71462 1.76372 1.15131 0.94231 1.20964 1.23703 0.98912 0.89176 0.94357 1.98385 1.81940 1.19173 1.96515 1.19448 1.05460 0.94051 0.98047 1.20321 0.96620 0.99764 0.91145 0.97161 0.95297 0.89567 0.92850 0.84753 0.86077 0.85627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.78 37.16 0.33 -2.70 15 2 C 0.07 1.75 2.46 -92.92 -0.23 1.52 15 3 H 0.04 0.94 7.84 -51.93 -0.41 0.53 15 4 C -0.51 -13.19 8.23 -34.44 -0.28 -13.48 15 5 H 0.06 1.47 7.60 -52.49 -0.40 1.07 15 6 C 0.06 1.68 5.30 -17.81 -0.09 1.58 15 7 N -0.89 -24.36 11.32 55.43 0.63 -23.73 15 8 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 15 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 12 C -0.06 -1.21 4.70 -104.99 -0.49 -1.71 15 13 C -0.04 -0.74 8.61 -39.91 -0.34 -1.09 15 14 C -0.15 -2.38 10.03 -39.79 -0.40 -2.78 15 15 C 0.12 1.87 7.34 -84.17 -0.62 1.25 15 16 N -0.50 -7.05 7.37 32.36 0.24 -6.81 15 17 H 0.44 4.48 8.96 -182.78 -1.64 2.84 15 18 N -0.25 -3.92 12.55 34.13 0.43 -3.49 15 19 C 0.14 2.31 8.09 -15.09 -0.12 2.18 15 20 Cl 0.01 0.17 29.33 -51.86 -1.52 -1.35 15 21 C -0.16 -2.87 6.37 -105.18 -0.67 -3.54 15 22 C -0.06 -1.10 9.67 -39.59 -0.38 -1.48 15 23 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 15 24 H 0.03 0.61 7.36 -51.93 -0.38 0.23 15 25 H 0.09 2.17 6.07 -51.93 -0.32 1.86 15 26 H 0.26 6.89 8.31 -40.82 -0.34 6.55 15 27 H 0.13 2.37 7.53 -52.49 -0.40 1.98 15 28 H 0.12 1.47 8.06 -52.48 -0.42 1.05 15 29 H 0.13 2.27 7.91 -52.49 -0.42 1.86 15 LS Contribution 268.78 15.07 4.05 4.05 Total: -1.00 -27.96 268.78 -8.44 -36.40 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -3.93 Total: -0.37 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -3.31 Total: -20.24 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 1.29 Total: -34.04 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -1.52 Total: -1.35 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.96 -8.44 -36.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260049935.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.896 kcal (2) G-P(sol) polarization free energy of solvation -27.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds