Wall clock time and date at job start Mon Mar 30 2020 06:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46677 * 2 1 4 4 C 1.50698 * 109.47192 * 239.99685 * 2 1 3 5 5 H 1.07994 * 120.00031 * 245.68657 * 4 2 1 6 6 C 1.37876 * 119.99940 * 65.41637 * 4 2 1 7 7 N 1.31513 * 120.00151 * 355.12567 * 6 4 2 8 8 Si 1.86804 * 119.99873 * 175.13282 * 6 4 2 9 9 H 1.48490 * 109.47321 * 94.99634 * 8 6 4 10 10 H 1.48501 * 109.46899 * 214.99874 * 8 6 4 11 11 H 1.48495 * 109.46961 * 334.99155 * 8 6 4 12 12 C 1.50697 * 109.46886 * 119.99341 * 2 1 3 13 13 C 1.36503 * 120.18167 * 60.00673 * 12 2 1 14 14 C 1.38921 * 120.63308 * 179.97438 * 13 12 2 15 15 C 1.36631 * 120.80633 * 0.02562 * 14 13 12 16 16 C 1.39246 * 119.85532 * 359.97438 * 15 14 13 17 17 N 1.37046 * 133.85083 * 180.02562 * 16 15 14 18 18 H 0.97008 * 125.44086 * 359.97438 * 17 16 15 19 19 N 1.39871 * 109.10185 * 179.27341 * 17 16 15 20 20 C 1.30305 * 110.08770 * 0.66305 * 19 17 16 21 21 Cl 1.73592 * 126.11880 * 179.43005 * 20 19 17 22 22 C 1.39881 * 120.18128 * 239.72446 * 12 2 1 23 23 H 1.09001 * 109.46863 * 174.92982 * 1 2 3 24 24 H 1.09000 * 109.47548 * 294.93343 * 1 2 3 25 25 H 1.09006 * 109.47218 * 54.93693 * 1 2 3 26 26 H 0.97003 * 120.00399 * 180.02562 * 7 6 4 27 27 H 1.08004 * 119.68734 * 359.97438 * 13 12 2 28 28 H 1.07992 * 119.59805 * 180.02562 * 14 13 12 29 29 H 1.08001 * 120.07413 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5754 -1.6389 -1.1339 6 6 1.7938 -0.1779 -2.4796 7 7 1.0469 0.8973 -2.6044 8 14 2.5314 -0.9839 -3.9949 9 1 1.5407 -1.9148 -4.5922 10 1 2.8892 0.0615 -4.9869 11 1 3.7507 -1.7389 -3.6099 12 6 2.0323 -0.7103 1.2305 13 6 1.7048 -2.0171 1.4503 14 6 2.1631 -2.6811 2.5812 15 6 2.9499 -2.0419 3.4973 16 6 3.3004 -0.7088 3.2999 17 7 4.0531 0.1901 4.0095 18 1 4.5030 0.0079 4.8494 19 7 4.0821 1.4073 3.3210 20 6 3.3772 1.3204 2.2285 21 17 3.1207 2.5898 1.0725 22 6 2.8414 -0.0357 2.1508 23 1 -0.3633 -1.0237 -0.0908 24 1 -0.3634 0.4332 0.9319 25 1 -0.3634 0.5904 -0.8412 26 1 0.8788 1.2718 -3.4833 27 1 1.0835 -2.5399 0.7382 28 1 1.8942 -3.7152 2.7382 29 1 3.2993 -2.5694 4.3725 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260065321.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:20 Heat of formation + Delta-G solvation = 71.426158 kcal Electronic energy + Delta-G solvation = -15857.524807 eV Core-core repulsion = 13193.529133 eV Total energy + Delta-G solvation = -2663.995674 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.89470 -37.17131 -36.38379 -34.25789 -31.92685 -30.47535 -29.33414 -27.82832 -25.08537 -22.92662 -22.18650 -21.22372 -19.87493 -16.99319 -16.57945 -16.01847 -14.99042 -14.73113 -14.67416 -14.43160 -13.72752 -12.99391 -12.46295 -11.98996 -11.73329 -11.55671 -11.37844 -11.28938 -11.06769 -10.91043 -10.67798 -10.44229 -10.27937 -9.94770 -9.44898 -9.28579 -8.75672 -8.32065 -8.21304 -7.36652 -5.98941 -4.03429 1.35053 1.87044 2.00974 2.68224 3.29214 3.31575 3.39222 3.43511 4.30409 4.48597 4.95757 5.07988 5.33835 5.43421 5.54780 5.78706 5.94928 6.24560 6.51043 6.56070 6.85641 6.89659 7.08113 7.18914 7.25702 7.40385 7.57391 7.72996 7.74320 8.01225 8.07213 8.39422 8.98356 9.59845 11.07878 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.022180 B = 0.008989 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.095613 B = 3114.200704 C = 3792.177050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.051 3.949 3 H 0.062 0.938 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.889 3.111 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.056 3.944 13 C -0.163 4.163 14 C -0.056 4.056 15 C -0.180 4.180 16 C 0.133 3.867 17 N -0.508 5.508 18 H 0.439 0.561 19 N -0.257 5.257 20 C 0.159 3.841 21 Cl 0.036 6.964 22 C -0.172 4.172 23 H 0.031 0.969 24 H 0.008 0.992 25 H 0.080 0.920 26 H 0.260 0.740 27 H 0.130 0.870 28 H 0.122 0.878 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.558 -2.657 10.361 10.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.033 3.967 3 H 0.080 0.920 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.054 3.946 13 C -0.183 4.183 14 C -0.077 4.077 15 C -0.202 4.202 16 C 0.019 3.981 17 N -0.226 5.226 18 H 0.283 0.717 19 N -0.076 5.076 20 C -0.044 4.044 21 Cl 0.064 6.936 22 C -0.180 4.180 23 H 0.050 0.950 24 H 0.027 0.973 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.140 0.860 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.184 -1.635 10.830 11.406 hybrid contribution 0.243 -0.924 -0.951 1.348 sum 3.428 -2.559 9.879 10.765 Atomic orbital electron populations 1.21763 0.97473 0.99960 0.99260 1.18280 0.92957 0.97551 0.87940 0.92028 1.21042 1.35435 1.08084 0.89808 0.92441 1.24902 0.94947 0.95059 0.98711 1.69913 1.37225 1.21859 1.23466 0.86625 0.79644 0.79098 0.82959 1.20806 1.21203 1.19869 1.20111 0.88093 0.93113 0.93294 1.20645 1.04458 0.94814 0.98365 1.20756 0.94613 0.99069 0.93241 1.19532 1.06745 0.91112 1.02792 1.18750 0.94644 0.92390 0.92307 1.45538 1.47717 1.06648 1.22679 0.71666 1.76435 1.20617 1.03828 1.06685 1.23898 0.97701 0.90631 0.92183 1.98431 1.94402 1.47779 1.52947 1.19474 1.07940 0.91984 0.98595 0.95020 0.97304 0.90153 0.93013 0.85186 0.85977 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.69 37.16 0.32 -2.65 15 2 C 0.05 1.24 2.43 -92.93 -0.23 1.01 15 3 H 0.06 1.55 4.85 -51.93 -0.25 1.30 15 4 C -0.51 -13.39 8.19 -34.44 -0.28 -13.67 15 5 H 0.06 1.52 7.53 -52.49 -0.40 1.13 15 6 C 0.07 1.76 5.36 -17.82 -0.10 1.66 15 7 N -0.89 -24.51 11.60 55.43 0.64 -23.86 15 8 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 15 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 12 C 0.06 1.21 4.75 -104.64 -0.50 0.72 15 13 C -0.16 -3.09 8.63 -39.95 -0.34 -3.43 15 14 C -0.06 -0.87 9.96 -39.91 -0.40 -1.26 15 15 C -0.18 -2.67 10.03 -39.79 -0.40 -3.07 15 16 C 0.13 2.30 7.34 -84.17 -0.62 1.68 15 17 N -0.51 -7.84 7.37 32.36 0.24 -7.60 15 18 H 0.44 4.88 8.96 -182.76 -1.64 3.25 15 19 N -0.26 -4.66 12.55 34.13 0.43 -4.23 15 20 C 0.16 3.16 8.05 -15.09 -0.12 3.04 15 21 Cl 0.04 0.71 26.59 -51.86 -1.38 -0.67 15 22 C -0.17 -3.51 6.15 -105.18 -0.65 -4.16 15 23 H 0.03 0.70 7.56 -51.93 -0.39 0.31 15 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 15 25 H 0.08 2.05 6.46 -51.93 -0.34 1.72 15 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 27 H 0.13 2.44 7.59 -52.48 -0.40 2.04 15 28 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 15 LS Contribution 264.08 15.07 3.98 3.98 Total: -1.00 -28.91 264.08 -8.23 -37.15 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -3.82 Total: -0.54 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -3.31 Total: -20.13 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 1.31 Total: -35.69 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: 0.71 SS G_CDS: -1.38 Total: -0.67 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.91 -8.23 -37.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260065321.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.573 kcal (2) G-P(sol) polarization free energy of solvation -28.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds