Wall clock time and date at job start Mon Mar 30 2020 06:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46677 * 2 1 4 4 C 1.50698 * 109.47192 * 239.99685 * 2 1 3 5 5 H 1.07994 * 120.00031 * 245.68657 * 4 2 1 6 6 C 1.37876 * 119.99940 * 65.41637 * 4 2 1 7 7 N 1.31513 * 120.00151 * 355.12567 * 6 4 2 8 8 Si 1.86804 * 119.99873 * 175.13282 * 6 4 2 9 9 H 1.48490 * 109.47321 * 94.99634 * 8 6 4 10 10 H 1.48501 * 109.46899 * 214.99874 * 8 6 4 11 11 H 1.48495 * 109.46961 * 334.99155 * 8 6 4 12 12 C 1.50697 * 109.46886 * 119.99341 * 2 1 3 13 13 C 1.36503 * 120.18167 * 60.00673 * 12 2 1 14 14 C 1.38921 * 120.63308 * 179.97438 * 13 12 2 15 15 C 1.36631 * 120.80633 * 0.02562 * 14 13 12 16 16 C 1.39246 * 119.85532 * 359.97438 * 15 14 13 17 17 N 1.37046 * 133.85083 * 180.02562 * 16 15 14 18 18 H 0.97008 * 125.44086 * 359.97438 * 17 16 15 19 19 N 1.39871 * 109.10185 * 179.27341 * 17 16 15 20 20 C 1.30305 * 110.08770 * 0.66305 * 19 17 16 21 21 Cl 1.73592 * 126.11880 * 179.43005 * 20 19 17 22 22 C 1.39881 * 120.18128 * 239.72446 * 12 2 1 23 23 H 1.09001 * 109.46863 * 174.92982 * 1 2 3 24 24 H 1.09000 * 109.47548 * 294.93343 * 1 2 3 25 25 H 1.09006 * 109.47218 * 54.93693 * 1 2 3 26 26 H 0.97003 * 120.00399 * 180.02562 * 7 6 4 27 27 H 1.08004 * 119.68734 * 359.97438 * 13 12 2 28 28 H 1.07992 * 119.59805 * 180.02562 * 14 13 12 29 29 H 1.08001 * 120.07413 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5754 -1.6389 -1.1339 6 6 1.7938 -0.1779 -2.4796 7 7 1.0469 0.8973 -2.6044 8 14 2.5314 -0.9839 -3.9949 9 1 1.5407 -1.9148 -4.5922 10 1 2.8892 0.0615 -4.9869 11 1 3.7507 -1.7389 -3.6099 12 6 2.0323 -0.7103 1.2305 13 6 1.7048 -2.0171 1.4503 14 6 2.1631 -2.6811 2.5812 15 6 2.9499 -2.0419 3.4973 16 6 3.3004 -0.7088 3.2999 17 7 4.0531 0.1901 4.0095 18 1 4.5030 0.0079 4.8494 19 7 4.0821 1.4073 3.3210 20 6 3.3772 1.3204 2.2285 21 17 3.1207 2.5898 1.0725 22 6 2.8414 -0.0357 2.1508 23 1 -0.3633 -1.0237 -0.0908 24 1 -0.3634 0.4332 0.9319 25 1 -0.3634 0.5904 -0.8412 26 1 0.8788 1.2718 -3.4833 27 1 1.0835 -2.5399 0.7382 28 1 1.8942 -3.7152 2.7382 29 1 3.2993 -2.5694 4.3725 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260065321.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:20 Heat of formation + Delta-G solvation = 54.604405 kcal Electronic energy + Delta-G solvation = -15858.254253 eV Core-core repulsion = 13193.529133 eV Total energy + Delta-G solvation = -2664.725120 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.26105 -38.60822 -37.86169 -35.96529 -33.62372 -32.04540 -30.72504 -29.34085 -27.10157 -24.46281 -23.54986 -22.67907 -21.48501 -18.41779 -18.27052 -17.63127 -16.52766 -16.33268 -16.11734 -15.90260 -15.21337 -14.71040 -14.15105 -13.52068 -13.31724 -13.06563 -12.99153 -12.82975 -12.79536 -12.61112 -12.35046 -12.14602 -12.05603 -11.67853 -11.10672 -10.85265 -10.57857 -10.29427 -9.59974 -8.74325 -8.01389 -6.11558 -0.02477 0.46534 0.62667 1.28525 1.44109 1.46696 1.55918 2.03410 2.48756 2.95895 3.28674 3.58905 3.79284 4.10524 4.25644 4.55967 4.60568 4.86541 4.96678 5.01854 5.21116 5.33154 5.38623 5.56689 5.65564 5.77859 5.95729 6.11121 6.19712 6.32866 6.44717 6.49450 6.96558 7.53826 9.03937 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.022180 B = 0.008989 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.095613 B = 3114.200704 C = 3792.177050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.047 3.953 3 H 0.047 0.953 4 C -0.514 4.514 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.945 3.055 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.018 3.982 13 C -0.170 4.170 14 C -0.050 4.050 15 C -0.157 4.157 16 C 0.131 3.869 17 N -0.485 5.485 18 H 0.459 0.541 19 N -0.257 5.257 20 C 0.134 3.866 21 Cl 0.024 6.976 22 C -0.201 4.201 23 H 0.034 0.966 24 H 0.019 0.981 25 H 0.052 0.948 26 H 0.259 0.741 27 H 0.122 0.878 28 H 0.166 0.834 29 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.448 -4.811 12.294 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.028 3.972 3 H 0.065 0.935 4 C -0.552 4.552 5 H 0.069 0.931 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.016 3.984 13 C -0.189 4.189 14 C -0.070 4.070 15 C -0.178 4.178 16 C 0.016 3.984 17 N -0.206 5.206 18 H 0.309 0.691 19 N -0.076 5.076 20 C -0.068 4.068 21 Cl 0.052 6.948 22 C -0.209 4.209 23 H 0.053 0.947 24 H 0.038 0.962 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.140 0.860 28 H 0.183 0.817 29 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.088 -3.795 12.790 13.953 hybrid contribution -0.001 -0.312 -1.411 1.445 sum 4.087 -4.107 11.379 12.769 Atomic orbital electron populations 1.21597 0.97583 0.99593 0.98565 1.18155 0.92977 0.97067 0.88990 0.93495 1.21325 1.34887 1.07873 0.91105 0.93107 1.25579 0.95446 0.95683 1.01234 1.70034 1.38346 1.23028 1.23808 0.85746 0.78969 0.78246 0.79929 1.20122 1.21240 1.19685 1.19870 0.90808 0.94428 0.93286 1.20758 1.04426 0.94002 0.99722 1.21151 0.93555 1.00807 0.91509 1.20089 1.04421 0.89762 1.03562 1.19021 0.94614 0.93355 0.91441 1.45532 1.46801 1.05401 1.22874 0.69145 1.76355 1.19918 1.05155 1.06209 1.23949 0.99226 0.90760 0.92893 1.98413 1.94566 1.48215 1.53592 1.19672 1.08731 0.92533 0.99948 0.94686 0.96159 0.92877 0.93177 0.85973 0.81667 0.81578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.69 71.98 0.63 -4.94 15 2 C 0.05 2.31 2.43 -12.29 -0.03 2.28 15 3 H 0.05 2.46 4.85 -2.39 -0.01 2.45 15 4 C -0.51 -27.75 8.19 25.60 0.21 -27.54 15 5 H 0.05 2.73 7.53 -2.91 -0.02 2.71 15 6 C 0.02 1.06 5.36 84.65 0.45 1.52 15 7 N -0.91 -51.89 11.60 21.45 0.25 -51.65 15 8 Si 0.94 43.44 29.54 68.60 2.03 45.46 15 9 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 15 11 H -0.27 -12.30 7.11 99.48 0.71 -11.60 15 12 C 0.02 0.79 4.75 -19.87 -0.09 0.70 15 13 C -0.17 -6.15 8.63 22.03 0.19 -5.96 15 14 C -0.05 -1.32 9.96 22.06 0.22 -1.10 15 15 C -0.16 -3.86 10.03 22.14 0.22 -3.64 15 16 C 0.13 4.11 7.34 39.21 0.29 4.40 15 17 N -0.48 -13.49 7.37 -51.53 -0.38 -13.87 15 18 H 0.46 8.39 8.96 -213.46 -1.91 6.48 15 19 N -0.26 -8.98 12.55 -45.94 -0.58 -9.56 15 20 C 0.13 5.31 8.05 86.94 0.70 6.01 15 21 Cl 0.02 0.98 26.59 -2.72 -0.07 0.91 15 22 C -0.20 -8.04 6.15 -20.22 -0.12 -8.16 15 23 H 0.03 1.59 7.56 -2.39 -0.02 1.57 15 24 H 0.02 0.87 8.14 -2.39 -0.02 0.85 15 25 H 0.05 2.81 6.46 -2.38 -0.02 2.79 15 26 H 0.26 14.11 8.31 -92.71 -0.77 13.34 15 27 H 0.12 4.50 7.59 -2.91 -0.02 4.48 15 28 H 0.17 2.96 8.06 -2.91 -0.02 2.93 15 29 H 0.17 2.55 8.06 -2.91 -0.02 2.52 15 Total: -1.00 -63.75 264.08 3.19 -60.56 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -0.72 Total: 4.57 kcal Atomic # 6 Polarization: -39.09 SS G_CDS: 2.66 Total: -36.43 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -0.71 Total: -75.08 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 17 Polarization: 0.98 SS G_CDS: -0.07 Total: 0.91 kcal Total: -63.75 3.19 -60.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260065321.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.167 kcal (2) G-P(sol) polarization free energy of solvation -63.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds