Wall clock time and date at job start Mon Mar 30 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47108 * 2 1 4 4 C 1.50699 * 109.46900 * 120.00116 * 2 1 3 5 5 H 1.07996 * 119.99798 * 116.62328 * 4 2 1 6 6 C 1.37877 * 119.99957 * 296.61829 * 4 2 1 7 7 N 1.31510 * 119.99758 * 351.89404 * 6 4 2 8 8 Si 1.86798 * 120.00008 * 171.89606 * 6 4 2 9 9 H 1.48495 * 109.47124 * 265.24630 * 8 6 4 10 10 H 1.48495 * 109.47154 * 145.24125 * 8 6 4 11 11 H 1.48507 * 109.47025 * 25.24593 * 8 6 4 12 12 C 1.50705 * 109.46814 * 239.99805 * 2 1 3 13 13 C 1.36501 * 120.18117 * 299.99895 * 12 2 1 14 14 C 1.38928 * 120.62328 * 179.97438 * 13 12 2 15 15 C 1.36622 * 120.81657 * 0.02562 * 14 13 12 16 16 C 1.39249 * 119.84961 * 0.02562 * 15 14 13 17 17 N 1.37042 * 133.84557 * 179.97438 * 16 15 14 18 18 H 0.96996 * 125.45598 * 0.03987 * 17 16 15 19 19 N 1.39869 * 109.10077 * 180.02562 * 17 16 15 20 20 C 1.30302 * 110.09044 * 0.02562 * 19 17 16 21 21 Cl 1.73600 * 126.11976 * 180.02562 * 20 19 17 22 22 C 1.39877 * 120.17852 * 119.72308 * 12 2 1 23 23 H 1.08998 * 109.47195 * 185.91061 * 1 2 3 24 24 H 1.09000 * 109.46810 * 305.90776 * 1 2 3 25 25 H 1.08999 * 109.47030 * 65.90924 * 1 2 3 26 26 H 0.97009 * 119.99624 * 180.02562 * 7 6 4 27 27 H 1.08002 * 119.68929 * 0.02562 * 13 12 2 28 28 H 1.08000 * 119.58796 * 180.02562 * 14 13 12 29 29 H 1.07994 * 120.08011 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6074 -1.6192 1.1323 6 6 1.7577 -0.2001 2.4815 7 7 1.1985 0.9842 2.6003 8 14 2.1800 -1.1909 4.0077 9 1 0.9875 -1.9610 4.4436 10 1 2.5995 -0.2706 5.0950 11 1 3.2889 -2.1289 3.6978 12 6 2.0323 -0.7105 -1.2305 13 6 1.7048 -2.0173 -1.4501 14 6 2.1623 -2.6810 -2.5816 15 6 2.9491 -2.0420 -3.4977 16 6 3.3005 -0.7092 -3.2998 17 7 4.0535 0.1894 -4.0094 18 1 4.5028 0.0076 -4.8495 19 7 4.0704 1.4110 -3.3284 20 6 3.3697 1.3227 -2.2334 21 17 3.1126 2.5925 -1.0777 22 6 2.8319 -0.0327 -2.1567 23 1 -0.3633 -1.0222 0.1058 24 1 -0.3633 0.6027 0.8324 25 1 -0.3633 0.4195 -0.9381 26 1 1.0056 1.3434 3.4805 27 1 1.0834 -2.5400 -0.7380 28 1 1.8926 -3.7149 -2.7389 29 1 3.2985 -2.5696 -4.3728 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260065327.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:21 Heat of formation + Delta-G solvation = 71.047596 kcal Electronic energy + Delta-G solvation = -15854.465286 eV Core-core repulsion = 13190.453197 eV Total energy + Delta-G solvation = -2664.012090 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.89032 -37.16977 -36.36171 -34.25726 -31.92326 -30.48308 -29.33361 -27.85094 -25.06901 -22.94406 -22.18277 -21.22143 -19.89486 -16.99205 -16.56451 -16.00479 -14.98168 -14.72563 -14.66246 -14.42973 -13.71599 -12.99637 -12.44752 -11.99085 -11.76372 -11.55165 -11.40140 -11.33958 -11.10653 -10.86348 -10.70433 -10.45317 -10.31427 -9.88342 -9.43552 -9.24391 -8.86626 -8.26218 -8.21744 -7.36965 -6.00438 -4.02258 1.35429 1.88773 2.01150 2.68835 3.30024 3.31908 3.39536 3.42800 4.30434 4.49000 4.96187 5.08442 5.32997 5.43564 5.55158 5.78953 5.94884 6.24671 6.50004 6.56171 6.82077 6.88530 7.06693 7.14274 7.22936 7.40209 7.57565 7.72098 7.74397 7.98571 8.03627 8.38848 8.99014 9.59939 11.08080 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.022556 B = 0.008961 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.037744 B = 3123.948683 C = 3860.707850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.049 3.951 3 H 0.065 0.935 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.057 3.943 13 C -0.164 4.164 14 C -0.056 4.056 15 C -0.179 4.179 16 C 0.133 3.867 17 N -0.508 5.508 18 H 0.439 0.561 19 N -0.258 5.258 20 C 0.159 3.841 21 Cl 0.038 6.962 22 C -0.172 4.172 23 H 0.032 0.968 24 H 0.071 0.929 25 H 0.011 0.989 26 H 0.260 0.740 27 H 0.130 0.870 28 H 0.122 0.878 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 -2.867 -10.404 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.031 3.969 3 H 0.083 0.917 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.054 3.946 13 C -0.183 4.183 14 C -0.077 4.077 15 C -0.202 4.202 16 C 0.019 3.981 17 N -0.226 5.226 18 H 0.283 0.717 19 N -0.076 5.076 20 C -0.044 4.044 21 Cl 0.066 6.934 22 C -0.180 4.180 23 H 0.052 0.948 24 H 0.090 0.910 25 H 0.030 0.970 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.140 0.860 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.792 -1.839 -10.877 11.380 hybrid contribution 0.066 -1.023 0.971 1.412 sum 2.858 -2.862 -9.906 10.700 Atomic orbital electron populations 1.21718 0.97671 0.99921 0.98979 1.18281 0.92705 0.97895 0.88010 0.91690 1.21032 1.34327 1.09503 0.89650 0.92423 1.24896 0.95255 0.94647 0.98719 1.69955 1.43161 1.15716 1.23471 0.86644 0.78620 0.80161 0.83009 1.20725 1.21333 1.19896 1.20095 0.88210 0.93078 0.93209 1.20647 1.04460 0.94846 0.98355 1.20755 0.94646 0.99058 0.93238 1.19530 1.06700 0.91174 1.02768 1.18752 0.94473 0.92397 0.92466 1.45532 1.47790 1.06314 1.22957 0.71676 1.76436 1.20813 1.03593 1.06759 1.23922 0.97670 0.90701 0.92138 1.98437 1.94392 1.47739 1.52802 1.19481 1.07924 0.91979 0.98618 0.94836 0.91034 0.96977 0.93015 0.85187 0.85985 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.66 37.16 0.32 -2.58 15 2 C 0.05 1.20 2.37 -92.92 -0.22 0.98 15 3 H 0.07 1.64 4.85 -51.93 -0.25 1.39 15 4 C -0.51 -13.42 8.20 -34.44 -0.28 -13.70 15 5 H 0.06 1.53 7.57 -52.49 -0.40 1.13 15 6 C 0.07 1.79 5.24 -17.82 -0.09 1.70 15 7 N -0.88 -24.52 12.00 55.43 0.66 -23.86 15 8 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 15 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 12 C 0.06 1.21 4.75 -104.63 -0.50 0.72 15 13 C -0.16 -3.08 8.66 -39.95 -0.35 -3.43 15 14 C -0.06 -0.87 9.96 -39.91 -0.40 -1.26 15 15 C -0.18 -2.67 10.03 -39.79 -0.40 -3.07 15 16 C 0.13 2.30 7.33 -84.17 -0.62 1.69 15 17 N -0.51 -7.85 7.37 32.36 0.24 -7.62 15 18 H 0.44 4.90 8.96 -182.78 -1.64 3.26 15 19 N -0.26 -4.68 12.55 34.13 0.43 -4.25 15 20 C 0.16 3.16 8.05 -15.08 -0.12 3.04 15 21 Cl 0.04 0.75 26.59 -51.86 -1.38 -0.63 15 22 C -0.17 -3.51 6.16 -105.18 -0.65 -4.16 15 23 H 0.03 0.73 7.59 -51.93 -0.39 0.33 15 24 H 0.07 1.80 6.83 -51.93 -0.35 1.44 15 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 26 H 0.26 6.91 8.31 -40.82 -0.34 6.57 15 27 H 0.13 2.42 7.61 -52.49 -0.40 2.02 15 28 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 15 LS Contribution 264.74 15.07 3.99 3.99 Total: -1.00 -28.98 264.74 -8.22 -37.20 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -3.84 Total: -0.60 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -3.30 Total: -20.08 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 1.33 Total: -35.73 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -1.38 Total: -0.63 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.98 -8.22 -37.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260065327.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.245 kcal (2) G-P(sol) polarization free energy of solvation -28.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds