Wall clock time and date at job start Mon Mar 30 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47108 * 2 1 4 4 C 1.50699 * 109.46900 * 120.00116 * 2 1 3 5 5 H 1.07996 * 119.99798 * 116.62328 * 4 2 1 6 6 C 1.37877 * 119.99957 * 296.61829 * 4 2 1 7 7 N 1.31510 * 119.99758 * 351.89404 * 6 4 2 8 8 Si 1.86798 * 120.00008 * 171.89606 * 6 4 2 9 9 H 1.48495 * 109.47124 * 265.24630 * 8 6 4 10 10 H 1.48495 * 109.47154 * 145.24125 * 8 6 4 11 11 H 1.48507 * 109.47025 * 25.24593 * 8 6 4 12 12 C 1.50705 * 109.46814 * 239.99805 * 2 1 3 13 13 C 1.36501 * 120.18117 * 299.99895 * 12 2 1 14 14 C 1.38928 * 120.62328 * 179.97438 * 13 12 2 15 15 C 1.36622 * 120.81657 * 0.02562 * 14 13 12 16 16 C 1.39249 * 119.84961 * 0.02562 * 15 14 13 17 17 N 1.37042 * 133.84557 * 179.97438 * 16 15 14 18 18 H 0.96996 * 125.45598 * 0.03987 * 17 16 15 19 19 N 1.39869 * 109.10077 * 180.02562 * 17 16 15 20 20 C 1.30302 * 110.09044 * 0.02562 * 19 17 16 21 21 Cl 1.73600 * 126.11976 * 180.02562 * 20 19 17 22 22 C 1.39877 * 120.17852 * 119.72308 * 12 2 1 23 23 H 1.08998 * 109.47195 * 185.91061 * 1 2 3 24 24 H 1.09000 * 109.46810 * 305.90776 * 1 2 3 25 25 H 1.08999 * 109.47030 * 65.90924 * 1 2 3 26 26 H 0.97009 * 119.99624 * 180.02562 * 7 6 4 27 27 H 1.08002 * 119.68929 * 0.02562 * 13 12 2 28 28 H 1.08000 * 119.58796 * 180.02562 * 14 13 12 29 29 H 1.07994 * 120.08011 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6074 -1.6192 1.1323 6 6 1.7577 -0.2001 2.4815 7 7 1.1985 0.9842 2.6003 8 14 2.1800 -1.1909 4.0077 9 1 0.9875 -1.9610 4.4436 10 1 2.5995 -0.2706 5.0950 11 1 3.2889 -2.1289 3.6978 12 6 2.0323 -0.7105 -1.2305 13 6 1.7048 -2.0173 -1.4501 14 6 2.1623 -2.6810 -2.5816 15 6 2.9491 -2.0420 -3.4977 16 6 3.3005 -0.7092 -3.2998 17 7 4.0535 0.1894 -4.0094 18 1 4.5028 0.0076 -4.8495 19 7 4.0704 1.4110 -3.3284 20 6 3.3697 1.3227 -2.2334 21 17 3.1126 2.5925 -1.0777 22 6 2.8319 -0.0327 -2.1567 23 1 -0.3633 -1.0222 0.1058 24 1 -0.3633 0.6027 0.8324 25 1 -0.3633 0.4195 -0.9381 26 1 1.0056 1.3434 3.4805 27 1 1.0834 -2.5400 -0.7380 28 1 1.8926 -3.7149 -2.7389 29 1 3.2985 -2.5696 -4.3728 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260065327.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:21 Heat of formation + Delta-G solvation = 54.136469 kcal Electronic energy + Delta-G solvation = -15855.198608 eV Core-core repulsion = 13190.453197 eV Total energy + Delta-G solvation = -2664.745411 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.25749 -38.60471 -37.84734 -35.95925 -33.62351 -32.05348 -30.72315 -29.35555 -27.07796 -24.47969 -23.54516 -22.67868 -21.49742 -18.40792 -18.25290 -17.62647 -16.50951 -16.32335 -16.11333 -15.90387 -15.19571 -14.70091 -14.13843 -13.59462 -13.35380 -13.09760 -12.98618 -12.83806 -12.75803 -12.58908 -12.36324 -12.16084 -12.05316 -11.62460 -11.05838 -10.88100 -10.65901 -10.23088 -9.59810 -8.74448 -8.02864 -6.10306 -0.02088 0.47702 0.63073 1.28951 1.44822 1.47103 1.55854 2.03984 2.49352 2.96447 3.27995 3.59321 3.79662 4.10969 4.25988 4.56250 4.60483 4.86694 4.95287 5.00166 5.20320 5.31544 5.36015 5.57450 5.66466 5.77475 5.95637 6.05741 6.20530 6.33385 6.44547 6.49794 6.97465 7.54090 9.04311 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.022556 B = 0.008961 C = 0.007251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.037744 B = 3123.948683 C = 3860.707850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.044 3.956 3 H 0.050 0.950 4 C -0.515 4.515 5 H 0.050 0.950 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.944 3.056 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.271 1.271 12 C 0.019 3.981 13 C -0.169 4.169 14 C -0.050 4.050 15 C -0.157 4.157 16 C 0.131 3.869 17 N -0.485 5.485 18 H 0.459 0.541 19 N -0.258 5.258 20 C 0.133 3.867 21 Cl 0.025 6.975 22 C -0.201 4.201 23 H 0.038 0.962 24 H 0.043 0.957 25 H 0.023 0.977 26 H 0.259 0.741 27 H 0.124 0.876 28 H 0.166 0.834 29 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.890 -5.157 -12.325 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.026 3.974 3 H 0.067 0.933 4 C -0.553 4.553 5 H 0.068 0.932 6 C -0.178 4.178 7 N -0.552 5.552 8 Si 0.771 3.229 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.196 1.196 12 C 0.016 3.984 13 C -0.189 4.189 14 C -0.070 4.070 15 C -0.179 4.179 16 C 0.016 3.984 17 N -0.206 5.206 18 H 0.308 0.692 19 N -0.077 5.077 20 C -0.069 4.069 21 Cl 0.053 6.947 22 C -0.209 4.209 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.142 0.858 28 H 0.184 0.816 29 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.534 -4.135 -12.825 13.931 hybrid contribution -0.119 -0.367 1.427 1.478 sum 3.415 -4.502 -11.398 12.722 Atomic orbital electron populations 1.21558 0.97610 0.99650 0.98356 1.18161 0.92865 0.97359 0.89028 0.93255 1.21310 1.33788 1.09205 0.90977 0.93151 1.25572 0.95502 0.95458 1.01290 1.70071 1.44372 1.16940 1.23813 0.85755 0.78504 0.78844 0.79833 1.20057 1.21449 1.19578 1.19862 0.90927 0.94409 0.93183 1.20769 1.04401 0.94005 0.99713 1.21156 0.93566 1.00801 0.91504 1.20088 1.04405 0.89808 1.03552 1.19027 0.94440 0.93370 0.91610 1.45526 1.46876 1.05064 1.23164 0.69160 1.76354 1.20120 1.04949 1.06281 1.23972 0.99223 0.90833 0.92838 1.98419 1.94564 1.48225 1.53486 1.19681 1.08750 0.92500 0.99979 0.94319 0.93753 0.95775 0.93187 0.85850 0.81650 0.81600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.42 8.66 71.98 0.62 -4.79 15 2 C 0.04 2.20 2.37 -12.28 -0.03 2.17 15 3 H 0.05 2.59 4.85 -2.39 -0.01 2.58 15 4 C -0.51 -27.77 8.20 25.60 0.21 -27.56 15 5 H 0.05 2.71 7.57 -2.91 -0.02 2.69 15 6 C 0.02 1.13 5.24 84.66 0.44 1.58 15 7 N -0.91 -52.04 12.00 21.45 0.26 -51.78 15 8 Si 0.94 43.30 29.54 68.60 2.03 45.33 15 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 10 H -0.29 -13.18 7.11 99.48 0.71 -12.47 15 11 H -0.27 -12.17 7.11 99.48 0.71 -11.47 15 12 C 0.02 0.80 4.75 -19.87 -0.09 0.70 15 13 C -0.17 -6.10 8.66 22.03 0.19 -5.91 15 14 C -0.05 -1.32 9.96 22.06 0.22 -1.10 15 15 C -0.16 -3.86 10.03 22.13 0.22 -3.64 15 16 C 0.13 4.11 7.33 39.21 0.29 4.40 15 17 N -0.49 -13.56 7.37 -51.53 -0.38 -13.94 15 18 H 0.46 8.45 8.96 -213.47 -1.91 6.54 15 19 N -0.26 -9.06 12.55 -45.93 -0.58 -9.63 15 20 C 0.13 5.33 8.05 86.94 0.70 6.03 15 21 Cl 0.03 1.02 26.59 -2.72 -0.07 0.95 15 22 C -0.20 -8.06 6.16 -20.22 -0.12 -8.18 15 23 H 0.04 1.72 7.59 -2.39 -0.02 1.70 15 24 H 0.04 2.30 6.83 -2.39 -0.02 2.29 15 25 H 0.02 1.03 8.14 -2.39 -0.02 1.01 15 26 H 0.26 14.14 8.31 -92.70 -0.77 13.37 15 27 H 0.12 4.49 7.61 -2.91 -0.02 4.47 15 28 H 0.17 2.93 8.06 -2.91 -0.02 2.91 15 29 H 0.17 2.54 8.06 -2.91 -0.02 2.52 15 Total: -1.00 -63.94 264.74 3.19 -60.76 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -0.72 Total: 4.62 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 2.65 Total: -36.31 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -0.70 Total: -75.35 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 17 Polarization: 1.02 SS G_CDS: -0.07 Total: 0.95 kcal Total: -63.94 3.19 -60.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260065327.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.894 kcal (2) G-P(sol) polarization free energy of solvation -63.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds