Wall clock time and date at job start Mon Mar 30 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37890 * 120.08417 * 2 1 4 4 C 1.38735 * 120.45026 * 180.02562 * 3 2 1 5 5 C 1.37650 * 120.51993 * 0.02562 * 4 3 2 6 6 C 1.39698 * 119.77109 * 359.97438 * 5 4 3 7 7 N 1.35823 * 133.54403 * 180.02562 * 6 5 4 8 8 C 1.30260 * 109.64108 * 179.97438 * 7 6 5 9 9 Cl 1.73602 * 124.96688 * 180.26313 * 8 7 6 10 10 N 1.36119 * 110.06796 * 0.02562 * 8 7 6 11 11 C 1.46497 * 126.35162 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47195 * 95.90046 * 11 10 8 13 13 H 1.07995 * 120.00320 * 0.02562 * 12 11 10 14 14 C 1.37887 * 120.00071 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99531 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99907 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47528 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46916 * 120.00308 * 16 14 12 19 19 H 1.48503 * 109.46817 * 240.00103 * 16 14 12 20 20 C 1.38189 * 107.29905 * 359.97438 * 10 8 7 21 21 H 1.08997 * 109.46873 * 263.41798 * 1 2 3 22 22 H 1.08995 * 109.46644 * 23.41756 * 1 2 3 23 23 H 1.08998 * 109.46480 * 143.41299 * 1 2 3 24 24 H 1.08004 * 119.77702 * 359.97438 * 3 2 1 25 25 H 1.08004 * 119.73639 * 180.02562 * 4 3 2 26 26 H 1.07996 * 120.11213 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.46940 * 215.90024 * 11 10 8 28 28 H 1.09002 * 109.46704 * 335.90131 * 11 10 8 29 29 H 0.96997 * 119.99632 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1931 0.0000 4 6 3.5856 1.2020 -0.0005 5 6 4.2922 0.0207 -0.0016 6 6 3.6076 -1.1970 -0.0016 7 7 4.0073 -2.4951 -0.0021 8 6 2.9636 -3.2746 -0.0013 9 17 3.0178 -5.0097 0.0051 10 7 1.8243 -2.5297 -0.0009 11 6 0.4519 -3.0420 0.0006 12 6 -0.0687 -3.0800 1.4142 13 1 0.5597 -2.7546 2.2300 14 6 -1.3478 -3.5291 1.6661 15 7 -2.1132 -3.9249 0.6726 16 14 -1.9933 -3.5755 3.4184 17 1 -0.9443 -3.0806 4.3457 18 1 -3.1961 -2.7112 3.5258 19 1 -2.3530 -4.9711 3.7766 20 6 2.2024 -1.2005 -0.0008 21 1 -0.3633 -0.1178 1.0209 22 1 -0.3632 0.9430 -0.4084 23 1 -0.3632 -0.8252 -0.6125 24 1 1.6560 2.1272 -0.0004 25 1 4.1153 2.1432 -0.0001 26 1 5.3720 0.0353 -0.0024 27 1 -0.1801 -2.3896 -0.6020 28 1 0.4393 -4.0482 -0.4184 29 1 -3.0129 -4.2413 0.8498 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260067198.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:21 Heat of formation + Delta-G solvation = 57.375726 kcal Electronic energy + Delta-G solvation = -15880.473322 eV Core-core repulsion = 13215.868376 eV Total energy + Delta-G solvation = -2664.604946 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.55981 -37.18370 -36.27825 -34.61857 -32.67016 -31.10686 -28.76619 -27.85652 -25.93565 -23.33320 -22.19838 -21.69082 -19.33110 -17.00323 -16.83388 -16.34640 -15.41991 -14.93617 -14.59735 -14.00835 -13.48796 -12.96282 -12.90454 -12.66424 -12.34000 -11.89303 -11.66970 -11.46848 -11.21524 -11.04121 -10.88525 -10.70360 -10.54580 -10.34210 -10.10054 -9.50199 -9.33504 -8.74299 -7.78602 -7.41203 -6.37734 -4.46070 1.35346 1.78490 2.00273 3.12841 3.15919 3.22173 3.27702 3.63682 4.20251 4.27644 4.87189 4.96670 5.26740 5.35953 5.68625 5.69288 5.75954 6.05620 6.13929 6.21563 6.32368 6.59551 6.77955 6.86072 6.90796 7.06174 7.21814 7.30758 7.50505 7.69323 7.72870 8.24248 8.59315 9.21404 10.69839 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.009586 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.980199 B = 2920.313385 C = 3957.715527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.050 4.050 3 C -0.125 4.125 4 C -0.128 4.128 5 C -0.081 4.081 6 C 0.049 3.951 7 N -0.497 5.497 8 C 0.319 3.681 9 Cl 0.033 6.967 10 N -0.442 5.442 11 C 0.226 3.774 12 C -0.538 4.538 13 H 0.065 0.935 14 C 0.071 3.929 15 N -0.887 5.887 16 Si 0.902 3.098 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.064 3.936 21 H 0.079 0.921 22 H 0.057 0.943 23 H 0.077 0.923 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.806 5.725 -2.028 8.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.145 4.145 4 C -0.148 4.148 5 C -0.101 4.101 6 C -0.072 4.072 7 N -0.222 5.222 8 C 0.028 3.972 9 Cl 0.061 6.939 10 N -0.130 5.130 11 C 0.108 3.892 12 C -0.576 4.576 13 H 0.083 0.917 14 C -0.133 4.133 15 N -0.524 5.524 16 Si 0.729 3.271 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.048 4.048 21 H 0.098 0.902 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.142 0.858 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.266 5.122 -2.081 8.356 hybrid contribution -1.312 -0.255 0.970 1.651 sum 4.954 4.867 -1.112 7.033 Atomic orbital electron populations 1.20947 0.90438 1.02129 1.03833 1.18914 0.96171 0.89546 1.00667 1.20665 0.93956 0.96213 1.03646 1.20716 0.93936 0.97039 1.03130 1.20041 0.99177 0.88899 1.01939 1.18917 0.90392 0.91421 1.06447 1.70274 1.27185 1.00010 1.24729 1.23269 0.83288 0.87607 1.03023 1.98398 1.98052 1.00578 1.96877 1.45962 1.09007 1.03552 1.54491 1.20111 0.72711 0.96556 0.99790 1.21233 0.99396 1.45477 0.91499 0.91687 1.24886 0.96179 0.94268 0.98014 1.69918 1.09248 1.42055 1.31217 0.86349 0.78955 0.78093 0.83681 1.19480 1.20527 1.20534 1.18655 0.94590 0.84973 1.06557 0.90222 0.92378 0.90480 0.85822 0.85924 0.85947 0.92244 0.92698 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 9.36 36.01 0.34 -1.74 15 2 C -0.05 -0.93 5.89 -104.56 -0.62 -1.55 15 3 C -0.12 -1.91 9.66 -39.53 -0.38 -2.29 15 4 C -0.13 -1.84 10.01 -39.61 -0.40 -2.24 15 5 C -0.08 -1.35 10.10 -39.25 -0.40 -1.74 15 6 C 0.05 0.99 7.23 -84.69 -0.61 0.38 15 7 N -0.50 -10.71 11.28 -9.13 -0.10 -10.81 15 8 C 0.32 6.88 8.46 -89.58 -0.76 6.12 15 9 Cl 0.03 0.62 28.60 -51.86 -1.48 -0.86 15 10 N -0.44 -9.94 2.79 -113.52 -0.32 -10.26 15 11 C 0.23 5.40 5.11 -5.20 -0.03 5.37 15 12 C -0.54 -13.85 9.35 -34.44 -0.32 -14.17 15 13 H 0.06 1.76 7.81 -52.49 -0.41 1.35 15 14 C 0.07 1.82 5.46 -17.82 -0.10 1.72 15 15 N -0.89 -23.63 13.29 55.43 0.74 -22.89 15 16 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 15 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 20 C 0.06 1.36 6.77 -83.95 -0.57 0.79 15 21 H 0.08 1.51 8.14 -51.93 -0.42 1.09 15 22 H 0.06 0.84 8.04 -51.93 -0.42 0.42 15 23 H 0.08 1.51 5.21 -51.93 -0.27 1.24 15 24 H 0.12 1.52 8.05 -52.48 -0.42 1.10 15 25 H 0.12 1.34 8.06 -52.48 -0.42 0.91 15 26 H 0.12 1.76 8.06 -52.49 -0.42 1.34 15 27 H 0.06 1.44 5.32 -51.93 -0.28 1.17 15 28 H 0.06 1.36 7.60 -51.93 -0.39 0.96 15 29 H 0.27 6.77 8.31 -40.82 -0.34 6.43 15 LS Contribution 268.80 15.07 4.05 4.05 Total: -1.00 -27.62 268.80 -8.57 -36.19 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -2.59 Total: -1.31 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -3.84 Total: -9.34 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.32 Total: -43.95 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 17 Polarization: 0.62 SS G_CDS: -1.48 Total: -0.86 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.62 -8.57 -36.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067198.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.569 kcal (2) G-P(sol) polarization free energy of solvation -27.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds