Wall clock time and date at job start Mon Mar 30 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37890 * 120.08417 * 2 1 4 4 C 1.38735 * 120.45026 * 180.02562 * 3 2 1 5 5 C 1.37650 * 120.51993 * 0.02562 * 4 3 2 6 6 C 1.39698 * 119.77109 * 359.97438 * 5 4 3 7 7 N 1.35823 * 133.54403 * 180.02562 * 6 5 4 8 8 C 1.30260 * 109.64108 * 179.97438 * 7 6 5 9 9 Cl 1.73602 * 124.96688 * 180.26313 * 8 7 6 10 10 N 1.36119 * 110.06796 * 0.02562 * 8 7 6 11 11 C 1.46497 * 126.35162 * 180.02562 * 10 8 7 12 12 C 1.50696 * 109.47195 * 95.90046 * 11 10 8 13 13 H 1.07995 * 120.00320 * 0.02562 * 12 11 10 14 14 C 1.37887 * 120.00071 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99531 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99907 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47528 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46916 * 120.00308 * 16 14 12 19 19 H 1.48503 * 109.46817 * 240.00103 * 16 14 12 20 20 C 1.38189 * 107.29905 * 359.97438 * 10 8 7 21 21 H 1.08997 * 109.46873 * 263.41798 * 1 2 3 22 22 H 1.08995 * 109.46644 * 23.41756 * 1 2 3 23 23 H 1.08998 * 109.46480 * 143.41299 * 1 2 3 24 24 H 1.08004 * 119.77702 * 359.97438 * 3 2 1 25 25 H 1.08004 * 119.73639 * 180.02562 * 4 3 2 26 26 H 1.07996 * 120.11213 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.46940 * 215.90024 * 11 10 8 28 28 H 1.09002 * 109.46704 * 335.90131 * 11 10 8 29 29 H 0.96997 * 119.99632 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1931 0.0000 4 6 3.5856 1.2020 -0.0005 5 6 4.2922 0.0207 -0.0016 6 6 3.6076 -1.1970 -0.0016 7 7 4.0073 -2.4951 -0.0021 8 6 2.9636 -3.2746 -0.0013 9 17 3.0178 -5.0097 0.0051 10 7 1.8243 -2.5297 -0.0009 11 6 0.4519 -3.0420 0.0006 12 6 -0.0687 -3.0800 1.4142 13 1 0.5597 -2.7546 2.2300 14 6 -1.3478 -3.5291 1.6661 15 7 -2.1132 -3.9249 0.6726 16 14 -1.9933 -3.5755 3.4184 17 1 -0.9443 -3.0806 4.3457 18 1 -3.1961 -2.7112 3.5258 19 1 -2.3530 -4.9711 3.7766 20 6 2.2024 -1.2005 -0.0008 21 1 -0.3633 -0.1178 1.0209 22 1 -0.3632 0.9430 -0.4084 23 1 -0.3632 -0.8252 -0.6125 24 1 1.6560 2.1272 -0.0004 25 1 4.1153 2.1432 -0.0001 26 1 5.3720 0.0353 -0.0024 27 1 -0.1801 -2.3896 -0.6020 28 1 0.4393 -4.0482 -0.4184 29 1 -3.0129 -4.2413 0.8498 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260067198.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:21 Heat of formation + Delta-G solvation = 43.263503 kcal Electronic energy + Delta-G solvation = -15881.085274 eV Core-core repulsion = 13215.868376 eV Total energy + Delta-G solvation = -2665.216898 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.07631 -38.59021 -37.76873 -36.34309 -34.47251 -32.58250 -30.20584 -29.60746 -27.44377 -25.16914 -23.65853 -23.14356 -20.84645 -18.92588 -18.29522 -17.98774 -16.81752 -16.64169 -16.27683 -15.46150 -14.96787 -14.52814 -14.40348 -14.28665 -14.05169 -13.28107 -13.13947 -13.09815 -12.91304 -12.57476 -12.49301 -12.23817 -12.13039 -12.11280 -11.71725 -11.07217 -11.05522 -10.71233 -9.23850 -8.86450 -8.34494 -6.50997 -0.05416 0.23143 0.64281 1.34626 1.37759 1.48422 1.63423 2.01798 2.33519 2.90753 2.96581 3.40269 3.97083 4.07039 4.18260 4.37469 4.44637 4.62288 4.76710 4.86968 4.91760 4.95345 5.31376 5.34029 5.51393 5.54563 5.64508 5.70009 5.76965 6.00808 6.02112 6.56012 6.69648 7.19595 8.71764 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.009586 C = 0.007073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.980199 B = 2920.313385 C = 3957.715527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.081 4.081 3 C -0.104 4.104 4 C -0.109 4.109 5 C -0.086 4.086 6 C 0.020 3.980 7 N -0.506 5.506 8 C 0.296 3.704 9 Cl 0.045 6.955 10 N -0.457 5.457 11 C 0.243 3.757 12 C -0.544 4.544 13 H 0.046 0.954 14 C 0.032 3.968 15 N -0.913 5.913 16 Si 0.961 3.039 17 H -0.275 1.275 18 H -0.269 1.269 19 H -0.274 1.274 20 C 0.035 3.965 21 H 0.059 0.941 22 H 0.093 0.907 23 H 0.048 0.952 24 H 0.164 0.836 25 H 0.173 0.827 26 H 0.146 0.854 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.328 8.191 -1.528 10.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.129 4.129 5 C -0.106 4.106 6 C -0.099 4.099 7 N -0.231 5.231 8 C 0.006 3.994 9 Cl 0.073 6.927 10 N -0.146 5.146 11 C 0.124 3.876 12 C -0.582 4.582 13 H 0.065 0.935 14 C -0.169 4.169 15 N -0.551 5.551 16 Si 0.785 3.215 17 H -0.200 1.200 18 H -0.194 1.194 19 H -0.200 1.200 20 C -0.076 4.076 21 H 0.078 0.922 22 H 0.112 0.888 23 H 0.067 0.933 24 H 0.182 0.818 25 H 0.190 0.810 26 H 0.163 0.837 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.808 7.602 -1.589 10.328 hybrid contribution -1.388 -0.889 0.778 1.822 sum 5.420 6.713 -0.811 8.666 Atomic orbital electron populations 1.20819 0.90485 1.02852 1.02235 1.19242 0.96517 0.89948 1.02695 1.21214 0.94706 0.96348 1.00032 1.21287 0.93662 0.98096 0.99897 1.20505 1.00587 0.88191 1.01285 1.19481 0.90618 0.92074 1.07770 1.70236 1.27199 1.00903 1.24810 1.23539 0.83303 0.88399 1.04133 1.98383 1.98026 0.99400 1.96878 1.45848 1.08343 1.04577 1.55817 1.19703 0.73813 0.95463 0.98615 1.21248 0.99530 1.45623 0.91793 0.93529 1.25563 0.96210 0.93757 1.01413 1.69989 1.09655 1.42537 1.32875 0.85459 0.78366 0.78325 0.79322 1.19965 1.19423 1.19958 1.19197 0.95542 0.85084 1.07748 0.92184 0.88778 0.93313 0.81819 0.80998 0.83667 0.93086 0.94351 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.77 9.36 71.24 0.67 -3.11 15 2 C -0.08 -2.91 5.89 -19.83 -0.12 -3.03 15 3 C -0.10 -2.74 9.66 22.31 0.22 -2.53 15 4 C -0.11 -2.63 10.01 22.25 0.22 -2.41 15 5 C -0.09 -2.62 10.10 22.48 0.23 -2.40 15 6 C 0.02 0.81 7.23 39.43 0.28 1.09 15 7 N -0.51 -22.09 11.28 -182.81 -2.06 -24.15 15 8 C 0.30 13.21 8.46 179.99 1.52 14.73 15 9 Cl 0.05 1.76 28.60 -2.72 -0.08 1.68 15 10 N -0.46 -21.27 2.79 -513.08 -1.43 -22.70 15 11 C 0.24 12.13 5.11 85.63 0.44 12.56 15 12 C -0.54 -28.86 9.35 25.60 0.24 -28.62 15 13 H 0.05 2.60 7.81 -2.91 -0.02 2.58 15 14 C 0.03 1.69 5.46 84.66 0.46 2.15 15 15 N -0.91 -49.32 13.29 21.45 0.28 -49.03 15 16 Si 0.96 41.68 29.54 68.60 2.03 43.70 15 17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 15 18 H -0.27 -11.17 7.11 99.48 0.71 -10.47 15 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 20 C 0.03 1.48 6.77 38.82 0.26 1.74 15 21 H 0.06 2.29 8.14 -2.39 -0.02 2.28 15 22 H 0.09 2.51 8.04 -2.39 -0.02 2.49 15 23 H 0.05 1.97 5.21 -2.39 -0.01 1.96 15 24 H 0.16 3.03 8.05 -2.91 -0.02 3.01 15 25 H 0.17 2.52 8.06 -2.91 -0.02 2.49 15 26 H 0.15 3.69 8.06 -2.91 -0.02 3.66 15 27 H 0.05 2.62 5.32 -2.39 -0.01 2.61 15 28 H 0.04 2.00 7.60 -2.39 -0.02 1.99 15 29 H 0.27 13.84 8.31 -92.71 -0.77 13.07 15 Total: -1.00 -61.22 268.80 4.34 -56.89 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: 1.18 Total: 3.43 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 4.42 Total: -9.81 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -3.21 Total: -95.89 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 17 Polarization: 1.76 SS G_CDS: -0.08 Total: 1.68 kcal Total: -61.22 4.34 -56.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067198.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.150 kcal (2) G-P(sol) polarization free energy of solvation -61.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds