Wall clock time and date at job start Mon Mar 30 2020 05:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00059 * 2 1 4 4 H 1.48493 * 109.47079 * 270.00287 * 3 2 1 5 5 H 1.48509 * 109.46945 * 29.99950 * 3 2 1 6 6 H 1.48504 * 109.47390 * 149.99957 * 3 2 1 7 7 C 1.37873 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00598 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99964 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46955 * 180.02562 * 9 7 2 11 11 C 1.35970 * 116.99964 * 180.02562 * 10 9 7 12 12 C 1.38587 * 120.11919 * 359.97438 * 11 10 9 13 13 C 1.38388 * 120.21729 * 179.97438 * 12 11 10 14 14 C 1.38118 * 120.32915 * 359.97438 * 13 12 11 15 15 C 1.38763 * 119.94996 * 0.02562 * 14 13 12 16 16 N 1.39247 * 133.28527 * 179.97438 * 15 14 13 17 17 H 0.97001 * 125.79600 * 359.97438 * 16 15 14 18 18 C 1.34629 * 108.40094 * 180.25166 * 16 15 14 19 19 S 1.71202 * 125.16861 * 179.75285 * 18 16 15 20 20 N 1.34643 * 109.66061 * 359.61623 * 18 16 15 21 21 H 0.96995 * 125.84984 * 180.13682 * 20 18 16 22 22 C 1.39051 * 120.12522 * 179.97438 * 11 10 9 23 23 H 0.96991 * 119.99982 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46973 * 59.99861 * 9 7 2 25 25 H 1.08998 * 109.46774 * 299.99243 * 9 7 2 26 26 H 1.07994 * 119.89083 * 359.95742 * 12 11 10 27 27 H 1.07998 * 119.83098 * 179.97438 * 13 12 11 28 28 H 1.08004 * 120.02335 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0017 11 6 1.6601 -4.8418 0.0014 12 6 0.2866 -5.0263 0.0004 13 6 -0.2445 -6.3042 -0.0005 14 6 0.5887 -7.4057 -0.0010 15 6 1.9655 -7.2329 -0.0001 16 7 3.0391 -8.1198 0.0002 17 1 2.9754 -9.0877 0.0001 18 6 4.1803 -7.4056 0.0069 19 16 5.7586 -8.0688 0.0158 20 7 3.8917 -6.0904 0.0024 21 1 4.5379 -5.3670 0.0038 22 6 2.5048 -5.9463 0.0019 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8904 26 1 -0.3715 -4.1700 0.0006 27 1 -1.3158 -6.4408 -0.0009 28 1 0.1689 -8.4009 -0.0022 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260075285.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:15 Heat of formation + Delta-G solvation = 19.228815 kcal Electronic energy + Delta-G solvation = -15292.679606 eV Core-core repulsion = 12628.464192 eV Total energy + Delta-G solvation = -2664.215414 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.62840 -38.99915 -36.51665 -34.28848 -33.07738 -30.13638 -29.54551 -27.71982 -24.10934 -23.73823 -22.97283 -22.02323 -19.30316 -17.78561 -17.22202 -16.61114 -16.54391 -16.10071 -15.72072 -15.08179 -14.76811 -14.67562 -14.23566 -13.20933 -12.53173 -12.16933 -11.82714 -11.70501 -11.46601 -11.34065 -11.17119 -11.12396 -10.39625 -10.33915 -9.53931 -9.40854 -8.76959 -7.88552 -7.76947 -7.45807 -6.43235 -4.48370 0.77330 1.11899 1.60232 1.77571 2.67060 2.81216 3.13759 3.19872 3.23446 3.56937 3.68090 4.20018 4.46709 4.75539 4.87513 4.94959 5.15109 5.19470 5.29332 5.75341 6.07154 6.26485 6.36405 6.45385 6.56515 6.79406 6.86018 6.98418 7.44629 7.70408 8.04366 8.60927 9.18155 10.67649 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027684 B = 0.005358 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.172262 B = 5224.332611 C = 6220.355387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.914 3.086 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.531 4.531 8 H 0.071 0.929 9 C 0.193 3.807 10 O -0.312 6.312 11 C 0.189 3.811 12 C -0.204 4.204 13 C -0.048 4.048 14 C -0.160 4.160 15 C 0.111 3.889 16 N -0.574 5.574 17 H 0.447 0.553 18 C 0.514 3.486 19 S -0.628 6.628 20 N -0.553 5.553 21 H 0.452 0.548 22 C 0.024 3.976 23 H 0.270 0.730 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.152 0.848 27 H 0.139 0.861 28 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.413 -11.787 -0.018 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.741 3.259 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.090 0.910 9 C 0.121 3.879 10 O -0.224 6.224 11 C 0.137 3.863 12 C -0.225 4.225 13 C -0.068 4.068 14 C -0.182 4.182 15 C 0.005 3.995 16 N -0.194 5.194 17 H 0.291 0.709 18 C 0.154 3.846 19 S -0.497 6.497 20 N -0.171 5.171 21 H 0.297 0.703 22 C -0.081 4.081 23 H 0.079 0.921 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.169 0.831 27 H 0.157 0.843 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.346 -11.951 -0.015 12.179 hybrid contribution -0.461 1.193 -0.012 1.279 sum -2.807 -10.757 -0.027 11.117 Atomic orbital electron populations 1.69921 1.06134 1.27963 1.48937 1.24918 0.95088 0.99614 0.94323 0.86221 0.79656 0.81504 0.78542 1.20154 1.20763 1.19409 1.20920 0.94328 0.88461 1.53138 0.91040 1.20828 0.88514 0.81147 0.97432 1.86159 1.39705 1.11367 1.85169 1.18144 0.90373 0.84811 0.92990 1.21349 0.93066 0.99412 1.08681 1.20806 0.99848 0.90742 0.95368 1.19884 0.87901 1.00255 1.10154 1.18111 0.90266 0.86471 1.04649 1.42877 1.02937 1.10180 1.63394 0.70940 1.22667 0.92521 0.83016 0.86431 1.93555 1.02259 1.77449 1.76477 1.42907 1.06542 1.06826 1.60778 0.70289 1.17573 0.82799 0.93153 1.14606 0.92087 0.95422 0.95420 0.83081 0.84293 0.84884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.01 13.29 55.43 0.74 -23.28 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 3 Si 0.91 20.12 29.54 -169.99 -5.02 15.10 15 4 H -0.28 -6.00 7.11 56.52 0.40 -5.59 15 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 7 C -0.53 -13.94 9.43 -34.44 -0.32 -14.26 15 8 H 0.07 1.87 7.81 -52.49 -0.41 1.46 15 9 C 0.19 4.51 4.50 36.01 0.16 4.68 15 10 O -0.31 -6.48 10.13 -19.65 -0.20 -6.67 15 11 C 0.19 3.19 6.70 -39.15 -0.26 2.93 15 12 C -0.20 -2.97 9.04 -39.40 -0.36 -3.32 15 13 C -0.05 -0.52 10.03 -39.57 -0.40 -0.91 15 14 C -0.16 -1.62 10.07 -39.43 -0.40 -2.02 15 15 C 0.11 1.38 7.25 -83.83 -0.61 0.77 15 16 N -0.57 -6.66 6.14 -11.50 -0.07 -6.73 15 17 H 0.45 3.80 8.96 -40.82 -0.37 3.43 15 18 C 0.51 7.58 8.22 -87.17 -0.72 6.87 15 19 S -0.63 -11.32 31.19 -107.50 -3.35 -14.67 15 20 N -0.55 -8.16 6.16 -11.39 -0.07 -8.23 15 21 H 0.45 6.37 8.96 -40.82 -0.37 6.00 15 22 C 0.02 0.36 7.20 -83.63 -0.60 -0.24 15 23 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 24 H 0.03 0.67 7.66 -51.93 -0.40 0.27 15 25 H 0.03 0.67 7.66 -51.93 -0.40 0.27 15 26 H 0.15 2.30 6.29 -52.49 -0.33 1.97 15 27 H 0.14 1.08 8.06 -52.49 -0.42 0.65 15 28 H 0.13 0.92 8.06 -52.48 -0.42 0.49 15 LS Contribution 267.44 15.07 4.03 4.03 Total: -1.00 -30.36 267.44 -9.79 -40.15 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -2.25 Total: 4.26 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -3.60 Total: -3.96 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.60 Total: -38.24 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.20 Total: -6.67 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: -11.32 SS G_CDS: -3.35 Total: -14.67 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.36 -9.79 -40.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075285.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.381 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds