Wall clock time and date at job start Mon Mar 30 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00059 * 2 1 4 4 H 1.48493 * 109.47079 * 270.00287 * 3 2 1 5 5 H 1.48509 * 109.46945 * 29.99950 * 3 2 1 6 6 H 1.48504 * 109.47390 * 149.99957 * 3 2 1 7 7 C 1.37873 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00598 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99964 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46955 * 180.02562 * 9 7 2 11 11 C 1.35970 * 116.99964 * 180.02562 * 10 9 7 12 12 C 1.38587 * 120.11919 * 359.97438 * 11 10 9 13 13 C 1.38388 * 120.21729 * 179.97438 * 12 11 10 14 14 C 1.38118 * 120.32915 * 359.97438 * 13 12 11 15 15 C 1.38763 * 119.94996 * 0.02562 * 14 13 12 16 16 N 1.39247 * 133.28527 * 179.97438 * 15 14 13 17 17 H 0.97001 * 125.79600 * 359.97438 * 16 15 14 18 18 C 1.34629 * 108.40094 * 180.25166 * 16 15 14 19 19 S 1.71202 * 125.16861 * 179.75285 * 18 16 15 20 20 N 1.34643 * 109.66061 * 359.61623 * 18 16 15 21 21 H 0.96995 * 125.84984 * 180.13682 * 20 18 16 22 22 C 1.39051 * 120.12522 * 179.97438 * 11 10 9 23 23 H 0.96991 * 119.99982 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46973 * 59.99861 * 9 7 2 25 25 H 1.08998 * 109.46774 * 299.99243 * 9 7 2 26 26 H 1.07994 * 119.89083 * 359.95742 * 12 11 10 27 27 H 1.07998 * 119.83098 * 179.97438 * 13 12 11 28 28 H 1.08004 * 120.02335 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 8 2.1797 -3.5853 0.0017 11 6 1.6601 -4.8418 0.0014 12 6 0.2866 -5.0263 0.0004 13 6 -0.2445 -6.3042 -0.0005 14 6 0.5887 -7.4057 -0.0010 15 6 1.9655 -7.2329 -0.0001 16 7 3.0391 -8.1198 0.0002 17 1 2.9754 -9.0877 0.0001 18 6 4.1803 -7.4056 0.0069 19 16 5.7586 -8.0688 0.0158 20 7 3.8917 -6.0904 0.0024 21 1 4.5379 -5.3670 0.0038 22 6 2.5048 -5.9463 0.0019 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8904 26 1 -0.3715 -4.1700 0.0006 27 1 -1.3158 -6.4408 -0.0009 28 1 0.1689 -8.4009 -0.0022 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260075285.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:14 Heat of formation + Delta-G solvation = -0.289190 kcal Electronic energy + Delta-G solvation = -15293.525970 eV Core-core repulsion = 12628.464192 eV Total energy + Delta-G solvation = -2665.061778 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.77254 -40.36831 -37.71235 -35.51599 -34.96194 -31.31389 -30.77591 -29.42744 -25.64621 -24.98736 -24.09028 -23.41344 -20.54151 -19.03945 -18.75664 -18.17312 -17.67527 -17.30398 -17.09346 -16.44980 -16.29486 -16.21189 -15.36645 -14.61295 -14.06490 -13.50469 -13.11166 -12.93466 -12.89032 -12.78155 -12.74105 -12.66028 -12.16490 -11.85262 -11.43246 -10.71916 -10.54194 -9.19711 -9.07496 -8.78292 -8.42064 -6.54836 -0.38721 0.04654 0.34964 0.65828 1.39736 1.40105 1.51626 1.59047 1.63656 2.18343 2.49274 2.50674 2.94012 3.37024 3.63167 3.86021 4.00014 4.18499 4.28662 4.68243 4.76505 4.96876 5.13368 5.16996 5.34368 5.42957 5.49111 5.68458 5.79513 5.95396 6.39679 6.66446 7.16625 8.69297 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027684 B = 0.005358 C = 0.004500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.172262 B = 5224.332611 C = 6220.355387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.978 3.022 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.560 4.560 8 H 0.063 0.937 9 C 0.212 3.788 10 O -0.336 6.336 11 C 0.146 3.854 12 C -0.206 4.206 13 C -0.036 4.036 14 C -0.125 4.125 15 C 0.114 3.886 16 N -0.546 5.546 17 H 0.463 0.537 18 C 0.524 3.476 19 S -0.695 6.695 20 N -0.552 5.552 21 H 0.451 0.549 22 C 0.009 3.991 23 H 0.274 0.726 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.137 0.863 27 H 0.182 0.818 28 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.110 -13.195 -0.036 14.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.801 3.199 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.192 1.192 7 C -0.598 4.598 8 H 0.081 0.919 9 C 0.139 3.861 10 O -0.249 6.249 11 C 0.096 3.904 12 C -0.227 4.227 13 C -0.056 4.056 14 C -0.147 4.147 15 C 0.008 3.992 16 N -0.166 5.166 17 H 0.311 0.689 18 C 0.160 3.840 19 S -0.565 6.565 20 N -0.169 5.169 21 H 0.296 0.704 22 C -0.097 4.097 23 H 0.083 0.917 24 H 0.032 0.968 25 H 0.032 0.968 26 H 0.155 0.845 27 H 0.199 0.801 28 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -4.072 -13.411 -0.034 14.016 hybrid contribution -0.106 1.507 -0.008 1.511 sum -4.178 -11.904 -0.041 12.616 Atomic orbital electron populations 1.69998 1.07361 1.29050 1.49282 1.25776 0.95958 1.02852 0.93577 0.85248 0.78414 0.77381 0.78840 1.19392 1.19790 1.19212 1.21285 0.94308 0.90352 1.53807 0.91887 1.20311 0.88177 0.81607 0.95995 1.86057 1.39327 1.12549 1.86985 1.18441 0.91872 0.83548 0.96560 1.21468 0.91858 1.01062 1.08327 1.21268 1.02092 0.88901 0.93330 1.20492 0.86262 1.02358 1.05558 1.18371 0.91207 0.85103 1.04537 1.42732 1.01622 1.10915 1.61344 0.68868 1.22127 0.92139 0.82945 0.86790 1.93672 1.05309 1.78031 1.79516 1.42946 1.06874 1.06958 1.60123 0.70435 1.17743 0.82659 0.93955 1.15297 0.91653 0.96771 0.96779 0.84538 0.80060 0.79806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.12 13.29 21.45 0.28 -49.84 15 2 C 0.02 1.00 5.46 84.65 0.46 1.46 15 3 Si 0.98 41.40 29.54 68.60 2.03 43.43 15 4 H -0.27 -11.01 7.11 99.48 0.71 -10.31 15 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 15 6 H -0.27 -11.15 7.11 99.48 0.71 -10.45 15 7 C -0.56 -30.39 9.43 25.60 0.24 -30.15 15 8 H 0.06 3.42 7.81 -2.91 -0.02 3.40 15 9 C 0.21 10.38 4.50 71.24 0.32 10.70 15 10 O -0.34 -14.58 10.13 -93.21 -0.94 -15.52 15 11 C 0.15 4.95 6.70 22.55 0.15 5.10 15 12 C -0.21 -5.77 9.04 22.39 0.20 -5.56 15 13 C -0.04 -0.63 10.03 22.28 0.22 -0.40 15 14 C -0.13 -1.84 10.07 22.37 0.23 -1.62 15 15 C 0.11 2.44 7.25 38.39 0.28 2.72 15 16 N -0.55 -11.11 6.14 -190.30 -1.17 -12.28 15 17 H 0.46 6.20 8.96 -92.71 -0.83 5.37 15 18 C 0.52 14.98 8.22 179.14 1.47 16.45 15 19 S -0.70 -25.25 31.19 -56.49 -1.76 -27.01 15 20 N -0.55 -16.30 6.16 -189.93 -1.17 -17.47 15 21 H 0.45 13.24 8.96 -92.71 -0.83 12.41 15 22 C 0.01 0.26 7.20 38.43 0.28 0.53 15 23 H 0.27 13.94 8.31 -92.71 -0.77 13.17 15 24 H 0.01 0.73 7.66 -2.39 -0.02 0.71 15 25 H 0.01 0.72 7.66 -2.39 -0.02 0.70 15 26 H 0.14 4.21 6.29 -2.91 -0.02 4.19 15 27 H 0.18 1.70 8.06 -2.91 -0.02 1.68 15 28 H 0.18 1.02 8.06 -2.91 -0.02 1.00 15 Total: -1.00 -68.64 267.44 0.68 -67.96 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -0.44 Total: 11.50 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 3.85 Total: -0.77 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -2.05 Total: -79.58 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.94 Total: -15.52 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: -25.25 SS G_CDS: -1.76 Total: -27.01 kcal Total: -68.64 0.68 -67.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075285.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.666 kcal (2) G-P(sol) polarization free energy of solvation -68.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds